View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0715_high_6 (Length: 306)
Name: NF0715_high_6
Description: NF0715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0715_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 30079219 - 30078926
Alignment:
| Q |
1 |
aagcttattcccccaatccgtttcttcctcagacaatctcctaaaatcccatgttatccttcccgcaacaagaaaatgatccttcccattcatgatactc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30079219 |
aagcttattcccccaatccgtttcttcctcagacaatctccgaaaatcccatgttatccttcccgcaacaagaaaatgatccttcccattcatgatactc |
30079120 |
T |
|
| Q |
101 |
cactccggcctcttcataagccaatcaaccagatcaagtgaagccgcatccctcctcgagatattataaccccaaagataacgcgcaatatcaaacccag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30079119 |
cactccggcctcttcataagccaatcaaccagatcaagtgaagccgcatccctcctcgagatattataaccccaaagataacgcgcaatatcaaacccag |
30079020 |
T |
|
| Q |
201 |
cataaaacggaacaaaaatcgcagcagcaatcgaagaatcctcagtcaaacactcatactgcttcatcctattactaaatataacagcaacagc |
294 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
30079019 |
cataaaacggaacaaaaatcgcagcagcaattgaagaatcctcagtcaaacactcatactgcttcatcctattactaaatataacatcaacagc |
30078926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 39485928 - 39486196
Alignment:
| Q |
1 |
aagcttattcccccaatccgtttcttcctcagacaatctcctaaaatcccatgttatccttcccgcaacaagaaaatgatccttcccattcatgatactc |
100 |
Q |
| |
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||||||||| |||||||| |||| |||||| |||||||||||||||||| || ||||| || ||||||||||||||||| |||||||||| | || | |
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| T |
39485928 |
aagcttattaccccaatctttttcatcctcactcaatctcctaaaatcccaagtaatcctaccagcaacaagaaaatgatctctcccattcataacaccc |
39486027 |
T |
|
| Q |
101 |
cactccggcctcttcataagccaatcaaccagatcaagtgaagccgcatccctcctcgagatattataaccccaaagataacgcgcaatatcaaacccag |
200 |
Q |
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|| ||||| |||||||| | ||||||||| || |||| ||||| ||||| ||| | || |||||||| |||||||||||||| ||||| ||||| |||| |
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| T |
39486028 |
cattccggtctcttcatcaaccaatcaacaagctcaacagaagcagcatctctcattgaaatattatacccccaaagataacgtgcaatgtcaaatccag |
39486127 |
T |
|
| Q |
201 |
cataaaacggaacaaaaatcgcagcagcaatcgaagaatcctcagtcaaacactcatactgcttcatcc |
269 |
Q |
| |
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|||||||||| ||||||| ||||||||||| |||||||| | |||||||| ||||| || ||||||| |
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| T |
39486128 |
cataaaacggtacaaaaacagcagcagcaattgaagaatcatttgtcaaacattcatattgtttcatcc |
39486196 |
T |
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