View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0715_low_1 (Length: 551)
Name: NF0715_low_1
Description: NF0715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0715_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 422; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 15 - 532
Target Start/End: Complemental strand, 54660504 - 54659997
Alignment:
| Q |
15 |
acatcatcaaccaaccccacaacatctcccacaccaaatcgcatacccatccgtcgtatcacaccaacacaaagagatgaacgtcgtgctcaaggcttat |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
54660504 |
acatcatcaaccaaccccacaacatctcccacaccaaattgcatacccatccgtcgtatcacaccaacacaaagagatgaacatcgtgctcaaggcttat |
54660405 |
T |
|
| Q |
115 |
gttacaactgcaatgaaaaatttgctccaggtcataattgttccacgggacgcttccttctcctaatgcacgaagtaggtgacatcgaatctgtggagga |
214 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
54660404 |
gttacaactgcgatgaaaaatttgctccaggtcataaatgttccacgggacgcttccttctcctaatgcacgaagaaggtgacatcgaatctgtggagga |
54660305 |
T |
|
| Q |
215 |
accattcgagaccgagctcccatccgacaatgatgaagnnnnnnnccagttgagcccccaagccctcacggggcagttctcccctcaaaccctcaggttc |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54660304 |
accattcgagaccgagctcccatccgacaatgatgaagtttttttccagttgagcccccaagccctcacggggcagttctcccctcaaaccctcaggttc |
54660205 |
T |
|
| Q |
315 |
aaaggcctattagatggactcgctgtgtccgttttgatggacaccggtagtgatcacaacatcctgcaaagccgcattgctactcacttacgcataccct |
414 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54660204 |
aaagtcctattagatggactcgctgtgtccgttttggtggacaccgatggtgatcacaacatcctgcaaagccgcattgctactcacttacgcataccct |
54660105 |
T |
|
| Q |
415 |
caaaacctgctccaaacttctcagtaatggttggaaatggttctcaccttcattgcacggacaaaaccatcttttccacattccattctaccttttccca |
514 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54660104 |
caaaacctgctccaaacttctcagt----------aatggttctcaccttcattgcacggacaaaaccatcttttccacattccattctaccttttccca |
54660015 |
T |
|
| Q |
515 |
attgaaggagatgatgtc |
532 |
Q |
| |
|
|||||||||| ||||||| |
|
|
| T |
54660014 |
attgaaggagctgatgtc |
54659997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 15 - 474
Target Start/End: Complemental strand, 16159816 - 16159357
Alignment:
| Q |
15 |
acatcatcaaccaaccccacaacatctcccacaccaaatcgcatacccatccgtcgtatcacaccaacacaaagagatgaacgtcgtgctcaaggcttat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16159816 |
acatcatcaaccaaccccacaacatctcccacaccaaatcgcatacccatccgtcgtatcacaccaacacaaagagatgaacgtcgtgctcaaggcttat |
16159717 |
T |
|
| Q |
115 |
gttacaactgcaatgaaaaatttgctccaggtcataattgttccacgggacgcttccttctcctaatgcacgaagtaggtgacatcgaatctgtggagga |
214 |
Q |
| |
|
||||||||||| |||||||||||| ||| || ||||| ||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
16159716 |
gttacaactgcgatgaaaaatttgttcccggccataaatgttccacgggacgctttcttctcctaatgcacgaagaaggtgacaccgaatctgtggagga |
16159617 |
T |
|
| Q |
215 |
accattcgagaccgagctcccatccgacaatgatgaagnnnnnnnccagttgagcccccaagccctcacggggcagttctcccctcaaaccctcaggttc |
314 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16159616 |
accatttgagaccgagctcccatccgacaatgatgaagtttttttccagttgagcccccaagccctcacggggcagttctcccctcaaaccctcaggttc |
16159517 |
T |
|
| Q |
315 |
aaaggcctattagatggactcgctgtgtccgttttgatggacaccggtagtgatcacaacatcctgcaaagccgcattgctactcacttacgcataccct |
414 |
Q |
| |
|
||||||||| |||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
16159516 |
aaaggcctactagatggacttgccgtgtccgttttggtggacaccggtagtgatcacaacatcctgcaaaggcgcattgctactcacttacgcataccct |
16159417 |
T |
|
| Q |
415 |
caaaacctgctccaaacttctcagtaatggttggaaatggttctcaccttcattgcacgg |
474 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16159416 |
caaaacctgccccaaacttctccgtaatggttggaaatggttctcaccttcattgcacgg |
16159357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 475 - 532
Target Start/End: Complemental strand, 16159328 - 16159271
Alignment:
| Q |
475 |
acaaaaccatcttttccacattccattctaccttttcccaattgaaggagatgatgtc |
532 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
16159328 |
acaaaatcatcttttccacattccattctacctttttccaattgaaggagctgatgtc |
16159271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1171 times since January 2019
Visitors: 4365