View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0715_low_16 (Length: 352)
Name: NF0715_low_16
Description: NF0715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0715_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 121; Significance: 6e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 170 - 338
Target Start/End: Complemental strand, 6075844 - 6075678
Alignment:
| Q |
170 |
ctttcgaaaaaatggctttaccttcaatattatttctattcttattcttttatctatgattttagcaaaggtttaatcactacatgctcaactcaaaagt |
269 |
Q |
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|||| |||| ||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
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| T |
6075844 |
ctttggaaataatggctttaccttcaatatt-tttctcttctt-ttcttttatctatgattttagcaaaggtttaatcactacatgctcaactcacaatt |
6075747 |
T |
|
| Q |
270 |
aacaaaaatctatgcaaactgcataaactttgccatactaaattcctacctccactacacctacgaccc |
338 |
Q |
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| T |
6075746 |
aacaaaaatctacgcaaactgcaaaaactttgccatactaaatttctacctccactacacctacgaccc |
6075678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 177 - 335
Target Start/End: Original strand, 27394185 - 27394342
Alignment:
| Q |
177 |
aaaaatggctttaccttcaatattatttctattcttattcttttatctatgattttagcaaaggtttaat--cactacatgctcaactcaaaagtaacaa |
274 |
Q |
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|||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
27394185 |
aaaaatggctttaccttcaataatatttctcttctt-ttcttttatctatgattttagcaaaggtttaatcacactacatgttcaactcaaaagtaacaa |
27394283 |
T |
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| Q |
275 |
aaatctatgcaaactgcataaactttgccatactaaattcctacctccactacacctacga |
335 |
Q |
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| T |
27394284 |
aaatctacgcaaattgcat--actttgtcgtattaaattcctgcctccactacacctacga |
27394342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 279 - 338
Target Start/End: Complemental strand, 22501822 - 22501763
Alignment:
| Q |
279 |
ctatgcaaactgcataaactttgccatactaaattcctacctccactacacctacgaccc |
338 |
Q |
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||||||||| ||||||||||||| | |||||||||| |||| |||||||||||| ||||| |
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| T |
22501822 |
ctatgcaaattgcataaactttgtcgtactaaattcatacccccactacacctatgaccc |
22501763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 234
Target Start/End: Complemental strand, 22502699 - 22502640
Alignment:
| Q |
175 |
gaaaaaatggctttacctt-caatattatttctattcttattcttttatctatgattttag |
234 |
Q |
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||||||||||||||||||| |||| ||||||| ||||| |||||||||||| |||||||| |
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| T |
22502699 |
gaaaaaatggctttaccttagaatactatttctcttctt-ttcttttatctacgattttag |
22502640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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