View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0715_low_19 (Length: 337)
Name: NF0715_low_19
Description: NF0715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0715_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 38260997 - 38260748
Alignment:
| Q |
1 |
ggtccatatttcttgtgtggtaggctgtggattcttccatcattaatattttcatttctcttcttcttctttctcatatcgttcttgttaacatccccaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
38260997 |
ggtccatatttcttgtgtggtaggctgtggattcttccatcattaatattttcatttctcttcttcttctttctcatatcgttcttgttaacatccc-aa |
38260899 |
T |
|
| Q |
101 |
catcagcaactgaaatattaattgtttgagaaggcagttcttgtgattgtgatgataagcctacatggagatcaagatgagaagaagcagcaacataagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38260898 |
catcagcaactgaaatattaattgtttgagaaggcagttcttgtgattgtgatgataagcctacatggagatcaagatgagaagaagcagcaacataagt |
38260799 |
T |
|
| Q |
201 |
attcattgtcatcatcatgttgttgttcttgttgttattgatgatgatgtc |
251 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38260798 |
attcattgtcatcatcatgttgttattcttgttgttattgatgatgatgtc |
38260748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 38244697 - 38244467
Alignment:
| Q |
1 |
ggtccatatttcttgtgtggtaggctgtggattcttccatcattaatattttcatttctcttcttcttctttctcatatcgttcttgttaacatccccaa |
100 |
Q |
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||||||| ||||| ||||||||||||||| ||| | ||||||| ||||||||||| |||||||||||||| || |||| |||||||||| ||||| || |
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| T |
38244697 |
ggtccatgtttctcgtgtggtaggctgtgaattttaccatcatcgatattttcattgctcttcttcttcttccttttatcattcttgttaatatccctaa |
38244598 |
T |
|
| Q |
101 |
catcagcaactgaaatattaattgtttgagaaggcagttcttgtgattgtgatgataagcctacatggagatcaagatgagaagaagcagcaacataagt |
200 |
Q |
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|||||| ||| | | ||| || ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| || | |||| |
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| T |
38244597 |
catcagtaacaaataaattgatagtttgagaaggcagttcttgtagttgtgatgataagcctacatgaagatcaagatgagaagaagtag---tagaagt |
38244501 |
T |
|
| Q |
201 |
attcattgtcatcatcatgttgttgttcttgttg |
234 |
Q |
| |
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||||||| |||||||| |||||||||| |||||| |
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| T |
38244500 |
attcattttcatcatcttgttgttgttgttgttg |
38244467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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