View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0715_low_20 (Length: 329)
Name: NF0715_low_20
Description: NF0715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0715_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 30 - 179
Target Start/End: Original strand, 44969 - 45118
Alignment:
| Q |
30 |
atatacaccttcctccccttatcattatcgacgactcgataatgagcatcatcatagacacgagtcagactttctacggtgcatgatatgcattatacat |
129 |
Q |
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| T |
44969 |
atatacaccttcctccccttatcattatagacgactcgataatgagcatcatcatagacacgagtcagactttctacggtgcatgatatgcattttacat |
45068 |
T |
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| Q |
130 |
aattttacaaactgcatccaagacaacaatcctcgacatatttcacatca |
179 |
Q |
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| T |
45069 |
aattttacaaactgcatccaagacaacaatcctcgacatatttcacatca |
45118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 196 - 314
Target Start/End: Original strand, 45505 - 45623
Alignment:
| Q |
196 |
atgttttatttgtattgatgaacttttacatgaaagtgtattgcaaggaattacatttcaatacctctactatatcttaataatattgtataggcaactc |
295 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45505 |
atgttttatttgtattgatgaacttttgcatgaaagtgtattgcaaggaattacatttcaatacctctactatatcttaataatattgtataggcaactc |
45604 |
T |
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| Q |
296 |
ccaaaatcctttatcttat |
314 |
Q |
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||||||||||||||||||| |
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| T |
45605 |
ccaaaatcctttatcttat |
45623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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