View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0715_low_27 (Length: 260)
Name: NF0715_low_27
Description: NF0715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0715_low_27 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 22 - 260
Target Start/End: Original strand, 35340644 - 35340882
Alignment:
| Q |
22 |
catcatcaccttctatgtatgcaattagatgagcagaacctgaatcttcattcctaaagtaataatttccttgaatgcattttgtagatgcataaccaaa |
121 |
Q |
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| T |
35340644 |
catcatcaccttctatgtatgcaattagatgagcagaacctgaatcttcattcctaaagtaataatttcctttaatacatattgtagatgcataaccaaa |
35340743 |
T |
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| Q |
122 |
ccaatcaccgtgacattcaccatatgcagcatgattgcattttggagaaatattgaccatgaaaatggatgtcattttggttgtgaggttggctatgtta |
221 |
Q |
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| T |
35340744 |
ccaatcaccgtcacattcaccatatgcagcatgattgcattttggagaaatattgaccatggaaatggatgtcattttggttgtgaggttggctatgtta |
35340843 |
T |
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| Q |
222 |
aaagtgtgtgattaaaagaagaaaatggaattaattagc |
260 |
Q |
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| T |
35340844 |
aaagtgtgtgattaaaagaagaaaatggaattaattagc |
35340882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 22 - 254
Target Start/End: Original strand, 35351066 - 35351298
Alignment:
| Q |
22 |
catcatcaccttctatgtatgcaattagatgagcagaacctgaatcttcattcctaaagtaataatttccttgaatgcattttgtagatgcataaccaaa |
121 |
Q |
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| T |
35351066 |
catcatcaccttccatgtatgtaactagatcagcagaacctgaatcttcattcctaatgtaataatttcctttaatgcatactgtagatgcatagccaaa |
35351165 |
T |
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| Q |
122 |
ccaatcaccgtgacattcaccatatgcagcatgattgcattttggagaaatattgaccatgaaaatggatgtcattttggttgtgaggttggctatgtta |
221 |
Q |
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| T |
35351166 |
cgaatcaacatcacattcaccatatgcagcatgattgcactttggagcagtattgacaatggaaatggatgccattttggttttgacgctgattatgtga |
35351265 |
T |
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| Q |
222 |
aaagtgtgtgattaaaagaagaaaatggaatta |
254 |
Q |
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| T |
35351266 |
aaagtttgtatttaaaagaagaaaatggaatta |
35351298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 254
Target Start/End: Complemental strand, 35343490 - 35343420
Alignment:
| Q |
184 |
aaatggatgtcattttggttgtgaggttggctatgttaaaagtgtgtgattaaaagaagaaaatggaatta |
254 |
Q |
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| T |
35343490 |
aaatggatgccattttggtttttacgctggctatgtgaaaagtgtatgttaaaaagaagaaaatggaatta |
35343420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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