View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0715_low_29 (Length: 235)

Name: NF0715_low_29
Description: NF0715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0715_low_29
NF0715_low_29
[»] chr7 (10 HSPs)
chr7 (7-235)||(4241172-4241400)
chr7 (19-215)||(4250424-4250620)
chr7 (7-215)||(4195635-4195843)
chr7 (7-215)||(4188746-4188954)
chr7 (48-215)||(4233425-4233592)
chr7 (90-215)||(4102418-4102543)
chr7 (55-215)||(4121860-4122020)
chr7 (90-205)||(4191969-4192084)
chr7 (90-215)||(4094870-4094995)
chr7 (67-116)||(4101028-4101077)


Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 7 - 235
Target Start/End: Original strand, 4241172 - 4241400
Alignment:
Q  7 catcatcaaaccaaacaacctcaatctctctcacttttttcgacatattttggcttaggttccatccaatagaatacatcttattctacaccctcccaaa 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  4241172 catcatcaaaccaaacaacctcaatctctctcacttttttcgacatattttggctaaggttccatccaatagaatacatcttattctacaccctcccaaa 4241271  T
Q  107 ttcacaatcagacacttcattcttctttcaaacaattgttccaaatcttaaatcttcactttctttgaccctccaacactttcttcctttagccggtaac 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4241272 ttcacaatcagacacttcattcttctttcaaacaattgttccaaatcttaaatcttcactttctttgaccctccaacactttcttcctttagccggtaac 4241371  T
Q  207 atcgtttgggattttgaatcacaaaaccc 235  Q
    |||||||||||||||||||||||||||||    
T  4241372 atcgtttgggattttgaatcacaaaaccc 4241400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 19 - 215
Target Start/End: Original strand, 4250424 - 4250620
Alignment:
Q  19 aaacaacctcaatctctctcacttttttcgacatattttggcttaggttccatccaatagaatacatcttattctacaccctcccaaattcacaatcaga 118  Q
    |||| ||||||||| |||| ||||| ||||||||||||||||| |||||||||||| |||||    | || ||||||||||||||||||||||||||| |    
T  4250424 aaaccacctcaatccctcttactttcttcgacatattttggctaaggttccatccagtagaacgagttttcttctacaccctcccaaattcacaatcaca 4250523  T
Q  119 cacttcattcttctttcaaacaattgttccaaatcttaaatcttcactttctttgaccctccaacactttcttcctttagccggtaacatcgtttgg 215  Q
    | |||| |||||||||||||| |||||||||||||| ||||| ||||| ||||| ||||||||||| ||||| |||||||| |||||||||||||||    
T  4250524 cccttctttcttctttcaaacgattgttccaaatctcaaatcatcactctctttaaccctccaacattttctccctttagctggtaacatcgtttgg 4250620  T

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Target: chr7; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 7 - 215
Target Start/End: Original strand, 4195635 - 4195843
Alignment:
Q  7 catcatcaaaccaaacaacctcaatctctctcacttttttcgacatattttggcttaggttccatccaatagaatacatcttattctacaccctcccaaa 106  Q
    ||||||||| ||||| |||  ||| | |||| ||||  || ||||||||||||||||||||||||||  |||||    | || |||||||||||||||||    
T  4195635 catcatcaacccaaaaaacaacaacccctcttacttactttgacatattttggcttaggttccatccggtagaacgtgttttcttctacaccctcccaaa 4195734  T
Q  107 ttcacaatcagacacttcattcttctttcaaacaattgttccaaatcttaaatcttcactttctttgaccctccaacactttcttcctttagccggtaac 206  Q
    |||||| ||| ||||||| ||||| || |||| | ||||||||| ||| ||||||||| | ||||| |||||||||||||||||||||||||| |||||     
T  4195735 ttcacattcacacacttctttctttttccaaaaacttgttccaattctcaaatcttcattctctttaaccctccaacactttcttcctttagctggtaaa 4195834  T
Q  207 atcgtttgg 215  Q
    |||||||||    
T  4195835 atcgtttgg 4195843  T

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Target: chr7; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 7 - 215
Target Start/End: Original strand, 4188746 - 4188954
Alignment:
Q  7 catcatcaaaccaaacaacctcaatctctctcacttttttcgacatattttggcttaggttccatccaatagaatacatcttattctacaccctcccaaa 106  Q
    ||||||||| |||||| ||  ||||  || ||||||| ||||||||||||||| | | ||||||||| ||||||   ||||| || ||||||||||||||    
T  4188746 catcatcaacccaaactacaacaattcctttcactttcttcgacatattttggataaagttccatcctatagaacgaatcttcttttacaccctcccaaa 4188845  T
Q  107 ttcacaatcagacacttcattcttctttcaaacaattgttccaaatcttaaatcttcactttctttgaccctccaacactttcttcctttagccggtaac 206  Q
    |||||||||| || |||| ||||||||||||| | | ||||||| ||| | ||| ||||| ||||| ||||||||||||||||| |||||||| |||||     
T  4188846 ttcacaatcacacccttctttcttctttcaaaaactagttccaattctcagatcatcactctctttaaccctccaacactttctccctttagctggtaaa 4188945  T
Q  207 atcgtttgg 215  Q
    || ||||||    
T  4188946 attgtttgg 4188954  T

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Target: chr7; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 48 - 215
Target Start/End: Original strand, 4233425 - 4233592
Alignment:
Q  48 gacatattttggcttaggttccatccaatagaatacatcttattctacaccctcccaaattcacaatcagacacttcattcttctttcaaacaattgttc 147  Q
    |||||||||||||| |||||||||||| |||||    | || |||||| |||||||||||||||| ||| || |||| ||||||||  | |   ||||||    
T  4233425 gacatattttggctaaggttccatccagtagaacgtgttttcttctacgccctcccaaattcacattcacacccttctttcttcttcaagaagcttgttc 4233524  T
Q  148 caaatcttaaatcttcactttctttgaccctccaacactttcttcctttagccggtaacatcgtttgg 215  Q
    ||| ||| ||||||||||| ||||| |||||| |  ||||||| |||||||| |||||||||||||||    
T  4233525 caattctcaaatcttcactctctttaaccctcaaggactttctccctttagctggtaacatcgtttgg 4233592  T

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Target: chr7; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 90 - 215
Target Start/End: Original strand, 4102418 - 4102543
Alignment:
Q  90 ttctacaccctcccaaattcacaatcagacacttcattcttctttcaaacaattgttccaaatcttaaatcttcactttctttgaccctccaacactttc 189  Q
    ||||||||||||||||||||||||||| || |||| | ||| ||| |||   |||||||||| || |||| |||||| ||||| ||||||||| |||| |    
T  4102418 ttctacaccctcccaaattcacaatcacacccttcttacttttttgaaaaccttgttccaaaactcaaatattcactctctttaaccctccaaaacttcc 4102517  T
Q  190 ttcctttagccggtaacatcgtttgg 215  Q
    | |||||||| |||||||||||||||    
T  4102518 tccctttagctggtaacatcgtttgg 4102543  T

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Target: chr7; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 55 - 215
Target Start/End: Original strand, 4121860 - 4122020
Alignment:
Q  55 tttggcttaggttccatccaatagaatacatcttattctacaccctcccaaattcacaatcagacacttcattcttctttcaaacaattgttccaaatct 154  Q
    ||||||| ||||| |||||| | |||   ||||| ||||||||||||||||||||||||||| || |||| |||||  || |||   |||||||||| ||    
T  4121860 tttggctaaggtttcatccagttgaacgtatcttcttctacaccctcccaaattcacaatcacacccttctttctttgttgaaaaccttgttccaaaact 4121959  T
Q  155 taaatcttcactttctttgaccctccaacactttcttcctttagccggtaacatcgtttgg 215  Q
     ||||||||||| ||||| ||||||||| | || |  |||||||| |||||||||||||||    
T  4121960 caaatcttcactctctttaaccctccaaaaattcccacctttagctggtaacatcgtttgg 4122020  T

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Target: chr7; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 90 - 205
Target Start/End: Original strand, 4191969 - 4192084
Alignment:
Q  90 ttctacaccctcccaaattcacaatcagacacttcattcttctttcaaacaattgttccaaatcttaaatcttcactttctttgaccctccaacactttc 189  Q
    |||||||||||||||| |||||||||| || |||| |||||||| ||||   ||||| ||| ||| ||||||||||  ||||| |||||| |||||||||    
T  4191969 ttctacaccctcccaagttcacaatcacacccttctttcttcttccaaaagcttgttacaattctcaaatcttcaccctctttaaccctcaaacactttc 4192068  T
Q  190 ttcctttagccggtaa 205  Q
    | |||||||| |||||    
T  4192069 tccctttagctggtaa 4192084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 90 - 215
Target Start/End: Original strand, 4094870 - 4094995
Alignment:
Q  90 ttctacaccctcccaaattcacaatcagacacttcattcttctttcaaacaattgttccaaatcttaaatcttcactttctttgaccctccaacactttc 189  Q
    |||||||||||||||| |||||| ||| || || | || |||||  |||   |||||||||| || ||||||||||| ||||| || || |||||||| |    
T  4094870 ttctacaccctcccaagttcacactcacaccctacttttttcttcgaaaatcttgttccaaaactcaaatcttcactctctttaactctacaacacttcc 4094969  T
Q  190 ttcctttagccggtaacatcgtttgg 215  Q
    | |||||||| |||||||||||||||    
T  4094970 tccctttagctggtaacatcgtttgg 4094995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 4101028 - 4101077
Alignment:
Q  67 tccatccaatagaatacatcttattctacaccctcccaaattcacaatca 116  Q
    |||||||| |||||| |||||| || |||||||||||||| |||||||||    
T  4101028 tccatccagtagaatgcatctttttgtacaccctcccaaaatcacaatca 4101077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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