View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0715_low_3 (Length: 519)
Name: NF0715_low_3
Description: NF0715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0715_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 28 - 499
Target Start/End: Complemental strand, 26586819 - 26586348
Alignment:
| Q |
28 |
catacacattaaacacaaaccctaaaaaaccgttcactcttatcctaaacctaagcaccttaaaccttaatcccgacacatcaccgacaaagttcgtgtt |
127 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
26586819 |
catacacattaaacacaaaccctaaaaatccgttcactcttatcctaaacctaa-caccttaaaccttaatcccgacacatcaccgacaaagtttgtgtt |
26586721 |
T |
|
| Q |
128 |
catgtctttttactattagatcaaactttacctttcttaaaaactttattgttcataaaagtgagagaaacaatatttaagaaagtttagtactaggagt |
227 |
Q |
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|
| ||||||||||| ||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26586720 |
cttgtctttttaccattagatcacactttatctttcttaaaaaccttattgttcataaaagtgagagaaacaatatttaagaaagtttagtactaggagt |
26586621 |
T |
|
| Q |
228 |
atgtataataatgtactgaaactgaagcgagcagacagtgtctgtgctcacgatcggatcagtacaaaatctgcttgcatcttgcttccttctcttatta |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26586620 |
atgtataataatgtactgaaactgaagcgagcagacagtgtctgtgctcacgatcggatcagtacaaaatctgcttgcatcttgcttccttctcttatta |
26586521 |
T |
|
| Q |
328 |
cttgtagcaaactcattctttgtctctttctttctctctccctca-nnnnnnnnctctctcatttccaatgcacattaatcattcgacgaattgactctg |
426 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
26586520 |
cttgtagcaaactcattctttgtctctttctttctctctccctcatttttttttctctctcatttccaatgcacgttaatcattcgacgaattgactctg |
26586421 |
T |
|
| Q |
427 |
agagaaaaatacacaacactacacaacaaaaccattaacttcttgtgttttgctttgcaagctaacatcatca |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
26586420 |
agagaaaaatacacaacactacacaacaaaaccattaacttcttgtgttttgctttgcaagctaacaccatca |
26586348 |
T |
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