View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0715_low_34 (Length: 201)

Name: NF0715_low_34
Description: NF0715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0715_low_34
NF0715_low_34
[»] chr3 (15 HSPs)
chr3 (1-181)||(9023396-9023576)
chr3 (1-181)||(9026100-9026280)
chr3 (1-182)||(9029058-9029239)
chr3 (1-181)||(9101174-9101354)
chr3 (1-181)||(8746900-8747080)
chr3 (1-181)||(9034566-9034746)
chr3 (6-125)||(9019290-9019409)
chr3 (6-116)||(9108805-9108915)
chr3 (1-170)||(9015380-9015549)
chr3 (1-131)||(8965272-8965402)
chr3 (1-130)||(8957118-8957247)
chr3 (16-125)||(8962563-8962672)
chr3 (26-170)||(8755538-8755682)
chr3 (1-161)||(8988314-8988471)
chr3 (26-113)||(9112121-9112208)


Alignment Details
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 9023576 - 9023396
Alignment:
Q  1 gcgaacattgacaatacaactgaaactccgatcatagccactgaacttgtaacagatccagcagctccaacatcaggacctggtgccggagccaacgagg 100  Q
    |||| ||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9023576 gcgagcattgacaatacaaccgaaattccgaccatagccactgaacttgtaacagatccagcagctccagcatcaggacctggtgccggagccaacgagg 9023477  T
Q  101 gactaaggtcttgagcagaggccactgtggcggcgaagatgatgaccaaaaagaaggagaagaacttcatagctgatgatg 181  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9023476 gactaaggtcttgggcagaggccactgtggcggcgaagatgatgaccaaaaagaaggagaagaactttatagctgatgatg 9023396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 9026280 - 9026100
Alignment:
Q  1 gcgaacattgacaatacaactgaaactccgatcatagccactgaacttgtaacagatccagcagctccaacatcaggacctggtgccggagccaacgagg 100  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||| ||||||||| ||||||||||| |    
T  9026280 gcgatcattgacaatacaactgaaactccgatcattgccactgaacttgtaacagatccagcaactccagcatcagaacctggtgctggagccaacgaag 9026181  T
Q  101 gactaaggtcttgagcagaggccactgtggcggcgaagatgatgaccaaaaagaaggagaagaacttcatagctgatgatg 181  Q
    ||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9026180 gactaagatcttgggcagaggccacggtggcggcgaagatgatgaccaaaaagaaggagaagaacttcatagctgatgatg 9026100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 9029239 - 9029058
Alignment:
Q  1 gcgaacattgacaatacaactgaaactccgatcatagccactgaacttgtaacagatccagcagctccaacatcaggacctggtgccggagccaacgagg 100  Q
    |||| ||||||||| |||| ||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||| |    
T  9029239 gcgagcattgacaacacaattgaaactccgatcatagccgctgaacttgtaatagatccagcagctccagcatcaggacctggtgctggagccaacgaag 9029140  T
Q  101 gactaaggtcttgagcagaggccactgtggcggcgaagatgatgaccaaaaagaaggagaagaacttcatagctgatgatgt 182  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  9029139 gactaaggtcttgggcagaggccacggtggcggcgaagatgatgaccaaaaagaaggagaagaacttcatagttgatgatgt 9029058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 9101354 - 9101174
Alignment:
Q  1 gcgaacattgacaatacaactgaaactccgatcatagccactgaacttgtaacagatccagcagctccaacatcaggacctggtgccggagccaacgagg 100  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||| |||||||||||||    
T  9101354 gcgagcattgacaatacaattgaaactccgatcatagccactgaacttgtaacagaaccagcagctccagcatcagggcctggtgctggagccaacgagg 9101255  T
Q  101 gactaaggtcttgagcagaggccactgtggcggcgaagatgatgaccaaaaagaaggagaagaacttcatagctgatgatg 181  Q
    |||| |||| ||| ||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  9101254 gactgaggttttgggcagaggccacggtggcggcgaagatgatgaccataaagaaggggaagaacttcatagctgatgatg 9101174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 8747080 - 8746900
Alignment:
Q  1 gcgaacattgacaatacaactgaaactccgatcatagccactgaacttgtaacagatccagcagctccaacatcaggacctggtgccggagccaacgagg 100  Q
    |||| ||||||||| |||| ||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  8747080 gcgagcattgacaacacaattgaaactccaatcatagccactgaatttgtaacagatccaacagctccaacatcaggacctggtgctggagccaacgagg 8746981  T
Q  101 gactaaggtcttgagcagaggccactgtggcggcgaagatgatgaccaaaaagaaggagaagaacttcatagctgatgatg 181  Q
    |||| |||||||| ||||||||||  |||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||    
T  8746980 gactgaggtcttgggcagaggccagggtggcggcgaagatgaagacgaaaaagaaggagaagaacttcatagctgaggatg 8746900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 9034746 - 9034566
Alignment:
Q  1 gcgaacattgacaatacaactgaaactccgatcatagccactgaacttgtaacagatccagcagctccaacatcaggacctggtgccggagccaacgagg 100  Q
    |||| ||||||||| |||| ||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |    
T  9034746 gcgagcattgacaacacaattgaaactccgatcatagccaccgaacttgcaacagatccagcagctccagcatcaggacctggtgccggagccaacgaag 9034647  T
Q  101 gactaaggtcttgagcagaggccactgtggcggcgaagatgatgaccaaaaagaaggagaagaacttcatagctgatgatg 181  Q
    ||||||||||||| |||||||||||  |||| |||||||||  ||| ||||||||||||||||| || |||||||| ||||    
T  9034646 gactaaggtcttgggcagaggccacgatggcagcgaagatggcgacgaaaaagaaggagaagaattttatagctgaagatg 9034566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 6 - 125
Target Start/End: Complemental strand, 9019409 - 9019290
Alignment:
Q  6 cattgacaatacaactgaaactccgatcatagccactgaacttgtaacagatccagcagctccaacatcaggacctggtgccggagccaacgagggacta 105  Q
    ||||||||| |||| |||| ||||||||||||| |||||||| ||||||||||||  ||| ||||||||||||||||||||||||||  | |||||||||    
T  9019409 cattgacaacacaattgaagctccgatcatagcaactgaactcgtaacagatccacaagccccaacatcaggacctggtgccggagcggatgagggacta 9019310  T
Q  106 aggtcttgagcagaggccac 125  Q
    ||||||||||| ||||||||    
T  9019309 aggtcttgagccgaggccac 9019290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 6 - 116
Target Start/End: Complemental strand, 9108915 - 9108805
Alignment:
Q  6 cattgacaatacaactgaaactccgatcatagccactgaacttgtaacagatccagcagctccaacatcaggacctggtgccggagccaacgagggacta 105  Q
    ||||||||| |||| |||| |||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||| ||| |||||||| ||||||||     
T  9108915 cattgacaagacaattgaagctccgatcatggccactgaacttgtaacagatccggcagctccgacatcaggacctgatgctggagccaatgagggactg 9108816  T
Q  106 aggtcttgagc 116  Q
    |||||||||||    
T  9108815 aggtcttgagc 9108805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 9015549 - 9015380
Alignment:
Q  1 gcgaacattgacaatacaactgaaactccgatcatagccactgaacttgtaacagatccagcagctccaacatcaggacctggtgccggagccaacgagg 100  Q
    |||| |||||||||||||| ||||||||| | ||||| ||||||| |||||||| ||||||| |||||  ||||||||||||||||||||| ||||||||    
T  9015549 gcgagcattgacaatacaattgaaactccaaccatagtcactgaatttgtaacatatccagctgctccggcatcaggacctggtgccggagacaacgagg 9015450  T
Q  101 gactaaggtcttgagcagaggccactgtggcggcgaagatgatgaccaaaaagaaggagaagaacttcat 170  Q
    | || ||||||||||| ||||| |  | ||| || || |||  ||| ||||||||||||||||| |||||    
T  9015449 ggctgaggtcttgagccgaggcgatagaggcagccaacatggcgacgaaaaagaaggagaagaatttcat 9015380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 8965402 - 8965272
Alignment:
Q  1 gcgaacattgacaatacaactgaaactccgatcatagccactgaacttgtaacagatccagcagctccaacatcaggacctggtgccggagccaacgagg 100  Q
    |||| ||||||||  |||| |||| |||||||||| ||||  ||||||||||||||||| ||||||||| | ||||||| |||||| ||||||||||| |    
T  8965402 gcgagcattgacagcacaattgaagctccgatcattgccatagaacttgtaacagatccggcagctccagcgtcaggacttggtgctggagccaacgacg 8965303  T
Q  101 gactaaggtcttgagcagaggccactgtggc 131  Q
    ||||||||||||| || ||||||||||||||    
T  8965302 gactaaggtcttgggccgaggccactgtggc 8965272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 8957247 - 8957118
Alignment:
Q  1 gcgaacattgacaatacaactgaaactccgatcatagccactgaacttgtaacagatccagcagctccaacatcaggacctggtgccggagccaacgagg 100  Q
    |||| ||||||||  |||| |||| |||||||||||||||| |||||||||||| |||| ||||||||| | |||||||| ||||| ||||| ||||| |    
T  8957247 gcgaccattgacagcacaattgaagctccgatcatagccacagaacttgtaacaaatccggcagctccagcgtcaggaccgggtgctggagctaacgacg 8957148  T
Q  101 gactaaggtcttgagcagaggccactgtgg 130  Q
    ||||||||||||| || |||||||| ||||    
T  8957147 gactaaggtcttgggccgaggccacggtgg 8957118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 8962672 - 8962563
Alignment:
Q  16 acaactgaaactccgatcatagccactgaacttgtaacagatccagcagctccaacatcaggacctggtgccggagccaacgagggactaaggtcttgag 115  Q
    |||| |||| |||||||||||||||| |||| || ||||||||| ||| ||||| |||||||||||||||| ||||| |||||||||||||||||||| |    
T  8962672 acaattgaagctccgatcatagccacagaacctgcaacagatccggcaactccagcatcaggacctggtgctggagctaacgagggactaaggtcttggg 8962573  T
Q  116 cagaggccac 125  Q
    | ||||||||    
T  8962572 ccgaggccac 8962563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 26 - 170
Target Start/End: Complemental strand, 8755682 - 8755538
Alignment:
Q  26 ctccgatcatagccactgaacttgtaacagatccagcagctccaacatcaggacctggtgccggagccaacgagggactaaggtcttgagcagaggccac 125  Q
    |||| |||||||| |||||| ||||||||||||||||||| ||  |||||||| ||||||||||||||||||||||||| ||||||||||| || |||||    
T  8755682 ctccaatcatagcaactgaatttgtaacagatccagcagcaccggcatcaggatctggtgccggagccaacgagggactgaggtcttgagccgaagccac 8755583  T
Q  126 tgtggcggcgaagatgatgaccaaaaagaaggagaagaacttcat 170  Q
     |  || |||||||  |  || |||||||||| ||| ||||||||    
T  8755582 ggctgctgcgaagacaacaacgaaaaagaaggcgaaaaacttcat 8755538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 8988471 - 8988314
Alignment:
Q  1 gcgaacattgacaatacaactgaaactccgatcatagccactgaacttgtaacagatccagcagctccaacatcaggacctggtgccggagccaacgagg 100  Q
    |||| |||||||| ||| | |||| ||||||||||||||||  |||||||| |||| |  ||||||||||| |||||||||||||| |||| ||||||||    
T  8988471 gcgagcattgacagtacgattgaagctccgatcatagccacataacttgtagcagaactggcagctccaacgtcaggacctggtgctggagacaacgagg 8988372  T
Q  101 gactaaggtcttgagcagaggccactgtggcggcgaagatgatgaccaaaaagaaggagaa 161  Q
    ||||||||||||| || ||||| ||   ||||||||| | |||||| |||| |||| ||||    
T  8988371 gactaaggtcttgggccgaggctac---ggcggcgaatacgatgacaaaaatgaagaagaa 8988314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 26 - 113
Target Start/End: Complemental strand, 9112208 - 9112121
Alignment:
Q  26 ctccgatcatagccactgaacttgtaacagatccagcagctccaacatcaggacctggtgccggagccaacgagggactaaggtcttg 113  Q
    |||| ||||||||||||| | |||||| ||||||| |||||||   ||||||  ||||||||||||||||||||||||| ||||||||    
T  9112208 ctcccatcatagccactggatttgtaagagatccaacagctccggtatcaggtgctggtgccggagccaacgagggactgaggtcttg 9112121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 794 times since January 2019
Visitors: 4393