View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0715_low_6 (Length: 495)
Name: NF0715_low_6
Description: NF0715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0715_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 29 - 488
Target Start/End: Complemental strand, 1514798 - 1514336
Alignment:
| Q |
29 |
aataatgacttaattatcagccaaatactttatgttttaggattaaagaaaccttaaatatgttcactagnnnnnnnnnnnnnnnnccttaaatattgga |
128 |
Q |
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| T |
1514798 |
aataatgacttaattatcagccaaatactttatgttttaggattaaagaaaccttaaatatgttcactagaaaaagaaaaaagaaaccttaaatattgga |
1514699 |
T |
|
| Q |
129 |
aaagttggtgttatatctaatgtaaatatgacacgacaaagttacaatattgaccatgtcttttgggagcttctaattacattgataaattatagggttt |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1514698 |
aaagttggtgttatatctaatgtaaatatgacacgacaaagttacagttttgaccatgtcttttgggagcttctaattacattgataaattatagggttt |
1514599 |
T |
|
| Q |
229 |
caattaagaggaacnnnnnnnattagtaaattaatgatcannnnnnngaattactgaattatttgtaaacatttgtactttaaaatgatataggaaaata |
328 |
Q |
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|||||||||||||| |||| |||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||| || |
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| T |
1514598 |
caattaagaggaac-ttttttattaataaattaatgatcatttttttgaattactcaattatttataaacatttgtactttaaaatgatataggagtgta |
1514500 |
T |
|
| Q |
329 |
ttatttcactggttataagcaatatattaatttctaattcnnnnnnnnnaaaagatattcaagattcactattgctagcaataataaagttagaatattt |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1514499 |
ttatttcactggttataagcaatatattaatttctaattcttttttcttaaaagatattcaagattcactattgtaagcaataataaagttagaatattt |
1514400 |
T |
|
| Q |
429 |
tgtacc----nnnnnnntaaataaagttagaatattttaaatgctatttcgttgatattattgg |
488 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1514399 |
tgtacccaaaaaaataaaaaataaagttagaatattttaaatgctatttcgttgatatttttgg |
1514336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 40446271 - 40446328
Alignment:
| Q |
29 |
aataatgacttaatt-atcagccaaatactttatgttttaggattaaagaaaccttaa |
85 |
Q |
| |
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||||||||| ||||| |||||| ||| |||||||||||||| | |||||||||||||| |
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| T |
40446271 |
aataatgacataatttatcagcaaaaaactttatgttttagaactaaagaaaccttaa |
40446328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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