View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0715_low_7 (Length: 469)

Name: NF0715_low_7
Description: NF0715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0715_low_7
NF0715_low_7
[»] chr5 (2 HSPs)
chr5 (87-469)||(14977590-14977972)
chr5 (97-392)||(15027763-15028058)
[»] chr6 (1 HSPs)
chr6 (288-453)||(1807952-1808117)


Alignment Details
Target: chr5 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 87 - 469
Target Start/End: Complemental strand, 14977972 - 14977590
Alignment:
Q  87 ggacatcatcaccaataaccatacaagttccaattaaagcaagaacaagcaaaaacttctgcaaaaccttccttttctcaagtgtagacttaagcctaaa 186  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14977972 ggacaccatcaccaataaccatacaagttccaatcaaagcaagaacaagcaaaaacttctgcaaaaccttccttttctcaagtgtagacttaagcctaaa 14977873  T
Q  187 ggcaaatcctttaacatttgaaacaccaccaccacaaccatctttcttatactcagacaattcttcatcagccaattgacaattaggaagagaattaact 286  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14977872 ggcaaatcctttaccatttgaaacaccaccaccacaaccatctttcttatactcagacaattcttcatcagccaattgacaattaggaagagaattaact 14977773  T
Q  287 ttagcatatctacacaacaaagagtaaagtgcaaaagtgcctccttctccattatcatcagctcttaacactatgaacacatatttaaccaaaggaacta 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14977772 ttagcatatctacacaacaaagagtaaagtgcaaaagtgcctccttcaccattatcatcagctcttaacactatgaacacatatttaaccaaaggaacta 14977673  T
Q  387 atgtaacagaccaaaacaccaaagacaaaacaccataaatctcttcatttgtatttgagtgtccaattccttcaccaaaagta 469  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14977672 atgtaacagaccaaaacaccagagacaaaacaccataaatctcttcatttgtatttgagtgtccaattccttcaccaaaagta 14977590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 97 - 392
Target Start/End: Complemental strand, 15028058 - 15027763
Alignment:
Q  97 accaataaccatacaagttccaattaaagcaagaacaagcaaaaacttctgcaaaaccttccttttctcaagtgtagacttaagcctaaaggcaaatcct 196  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15028058 accaataaccatacaagtttcaatcaaagcaagaacaagcaaaaacttctgcaaaaccttccttttctcaagtgtagacttaagcctaaaggcaaatcct 15027959  T
Q  197 ttaacatttgaaacaccaccaccacaaccatctttcttatactcagacaattcttcatcagccaattgacaattaggaagagaattaactttagcatatc 296  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15027958 ttaccatttgaaacaccaccaccacaaccatctttcttatactcagacaattcttcatcagccaattgacaattaggaagagaattaactttagcatatc 15027859  T
Q  297 tacacaacaaagagtaaagtgcaaaagtgcctccttctccattatcatcagctcttaacactatgaacacatatttaaccaaaggaactaatgtaa 392  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  15027858 tacacaacaaagagttaagtgcaaaagtgcctccttcaccattatcatcagctcttaacactatgaacacatatttaaccaaagaaactaatgtaa 15027763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 288 - 453
Target Start/End: Complemental strand, 1808117 - 1807952
Alignment:
Q  288 tagcatatctacacaacaaagagtaaagtgcaaaagtgcctccttctccattatcatcagctcttaacactatgaacacatatttaaccaaaggaactaa 387  Q
    |||||| |||||| | ||||||||| |  |||||||| |||||||| ||||||||||||||||| ||||| |||||||||||||| |  |  ||||  ||    
T  1808117 tagcatgtctacatagcaaagagtacaaagcaaaagtccctccttcaccattatcatcagctctcaacacaatgaacacatatttcagaagtggaatcaa 1808018  T
Q  388 tgtaacagaccaaaacaccaaagacaaaacaccataaatctcttcatttgtatttgagtgtccaat 453  Q
     || |  | ||||||||| |||||||| |||||| | || ||||||||||||| ||| ||| ||||    
T  1808017 agttagtgtccaaaacacaaaagacaatacaccaaagatttcttcatttgtatctgaatgttcaat 1807952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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