View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0715_low_8 (Length: 444)

Name: NF0715_low_8
Description: NF0715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0715_low_8
NF0715_low_8
[»] chr6 (9 HSPs)
chr6 (117-289)||(28192123-28192291)
chr6 (120-221)||(28247488-28247589)
chr6 (221-309)||(28247261-28247349)
chr6 (1-73)||(28228530-28228601)
chr6 (117-178)||(28247346-28247407)
chr6 (10-104)||(28247041-28247135)
chr6 (12-72)||(28239998-28240058)
chr6 (10-80)||(28329271-28329340)
chr6 (10-80)||(28506907-28506976)
[»] scaffold0038 (6 HSPs)
scaffold0038 (120-221)||(47650-47751)
scaffold0038 (221-309)||(47423-47511)
scaffold0038 (1-73)||(29028-29099)
scaffold0038 (117-178)||(47508-47569)
scaffold0038 (10-104)||(47203-47297)
scaffold0038 (12-72)||(40160-40220)
[»] scaffold0019 (1 HSPs)
scaffold0019 (10-89)||(54687-54766)


Alignment Details
Target: chr6 (Bit Score: 87; Significance: 2e-41; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 117 - 289
Target Start/End: Original strand, 28192123 - 28192291
Alignment:
Q  117 tatcattattatttatgttcttcaaatgatttctcttttcactttgagttatgatctgttgcatgatatgcaatacctctgaattatagttttcattaca 216  Q
    |||||||||||||||||||||||||| |||| |||| | ||||  ||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||    
T  28192123 tatcattattatttatgttcttcaaaagattgctctctccact--gagttattatctgttgcataatatgcaatacttctgaattatagttttcattaca 28192220  T
Q  217 tacattgctattcctcgacgattgagtgcaaaaatatagtattatagaattatacttgtcatttctatggtta 289  Q
    ||||||||||| ||| |||||||||||  |||||| |||||| ||||  |  |||||||||| ||||||||||    
T  28192221 tacattgctatcccttgacgattgagtagaaaaatgtagtatgatag--tgttacttgtcatctctatggtta 28192291  T

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Target: chr6; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 120 - 221
Target Start/End: Complemental strand, 28247589 - 28247488
Alignment:
Q  120 cattattatttatgttcttcaaatgatttctcttttcactttgagttatgatctgttgcatgatatgcaatacctctgaattatagttttcattacatac 219  Q
    ||||||||||||||||||| |||||||| |||| | ||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||    
T  28247589 cattattatttatgttctttaaatgattgctctctccactttgagttatgatctgttgcatgatatgaaatatttctgaattatagttttcattacatac 28247490  T
Q  220 at 221  Q
    ||    
T  28247489 at 28247488  T

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Target: chr6; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 221 - 309
Target Start/End: Complemental strand, 28247349 - 28247261
Alignment:
Q  221 ttgctattcctcgacgattgagtgcaaaaatatagtattatagaattatacttgtcatttctatggttatcccccattggtgttgtgta 309  Q
    ||||||| |||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  28247349 ttgctatccctcgaagattgagtggaaaaatgtagtattatagaattatacttgtcatttctatggttagcccccattggtgttgtgta 28247261  T

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Target: chr6; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 28228530 - 28228601
Alignment:
Q  1 gtcttattatgtgaatgatgaattcaatgaccacagtgtcaacagagataatgtaaatatgtaattttaatta 73  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  28228530 gtcttattatgtgaatgatgaattcaatgaccaca-tgtcaacagagataatgtaaatatgtaattttaatta 28228601  T

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Target: chr6; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 117 - 178
Target Start/End: Complemental strand, 28247407 - 28247346
Alignment:
Q  117 tatcattattatttatgttcttcaaatgatttctcttttcactttgagttatgatctgttgc 178  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  28247407 tatcattattatttatgttcttcaaatgatttctctctccactttgagttatgatctgttgc 28247346  T

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Target: chr6; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 10 - 104
Target Start/End: Original strand, 28247041 - 28247135
Alignment:
Q  10 tgtgaatgatgaattcaatgaccacagtgtcaacagaga-taatgtaaatatgtaattttaattatgtgtgcgtacttattttgttacatattatc 104  Q
    |||||||||||||| |||||||||| ||||||||| | | |||||||||||| ||||||||||| ||||||| || ||||| ||||||||||||||    
T  28247041 tgtgaatgatgaat-caatgaccaccgtgtcaacacaaaataatgtaaatatctaattttaattctgtgtgcttatttattatgttacatattatc 28247135  T

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Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 28239998 - 28240058
Alignment:
Q  12 tgaatgatgaattcaatgaccacagtgtcaacagagataatgtaaatatgtaattttaatt 72  Q
    ||||||||||||||||||||||  |||||||||  ||||||||||||||||||||||||||    
T  28239998 tgaatgatgaattcaatgaccatggtgtcaacactgataatgtaaatatgtaattttaatt 28240058  T

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Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 28329271 - 28329340
Alignment:
Q  10 tgtgaatgatgaattcaatgaccacagtgtcaacagagataatgtaaatatgtaattttaattatgtgtgc 80  Q
    ||||||||||||||||||||||||| ||||| ||| |||| ||||||||||||||||  |||| |||||||    
T  28329271 tgtgaatgatgaattcaatgaccaccgtgtcgacacagat-atgtaaatatgtaattccaattctgtgtgc 28329340  T

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Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 28506907 - 28506976
Alignment:
Q  10 tgtgaatgatgaattcaatgaccacagtgtcaacagagataatgtaaatatgtaattttaattatgtgtgc 80  Q
    ||||||||||||||||||||||||| ||||| ||| |||| ||||||||||||||||  |||| |||||||    
T  28506907 tgtgaatgatgaattcaatgaccaccgtgtcgacacagat-atgtaaatatgtaattccaattctgtgtgc 28506976  T

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Target: scaffold0038 (Bit Score: 74; Significance: 9e-34; HSPs: 6)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 120 - 221
Target Start/End: Complemental strand, 47751 - 47650
Alignment:
Q  120 cattattatttatgttcttcaaatgatttctcttttcactttgagttatgatctgttgcatgatatgcaatacctctgaattatagttttcattacatac 219  Q
    ||||||||||||||||||| |||||||| |||| | ||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||    
T  47751 cattattatttatgttctttaaatgattgctctctccactttgagttatgatctgttgcatgatatgaaatatttctgaattatagttttcattacatac 47652  T
Q  220 at 221  Q
    ||    
T  47651 at 47650  T

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Target: scaffold0038; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 221 - 309
Target Start/End: Complemental strand, 47511 - 47423
Alignment:
Q  221 ttgctattcctcgacgattgagtgcaaaaatatagtattatagaattatacttgtcatttctatggttatcccccattggtgttgtgta 309  Q
    ||||||| |||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  47511 ttgctatccctcgaagattgagtggaaaaatgtagtattatagaattatacttgtcatttctatggttagcccccattggtgttgtgta 47423  T

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Target: scaffold0038; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 29028 - 29099
Alignment:
Q  1 gtcttattatgtgaatgatgaattcaatgaccacagtgtcaacagagataatgtaaatatgtaattttaatta 73  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  29028 gtcttattatgtgaatgatgaattcaatgaccaca-tgtcaacagagataatgtaaatatgtaattttaatta 29099  T

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Target: scaffold0038; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 117 - 178
Target Start/End: Complemental strand, 47569 - 47508
Alignment:
Q  117 tatcattattatttatgttcttcaaatgatttctcttttcactttgagttatgatctgttgc 178  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  47569 tatcattattatttatgttcttcaaatgatttctctctccactttgagttatgatctgttgc 47508  T

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Target: scaffold0038; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 10 - 104
Target Start/End: Original strand, 47203 - 47297
Alignment:
Q  10 tgtgaatgatgaattcaatgaccacagtgtcaacagaga-taatgtaaatatgtaattttaattatgtgtgcgtacttattttgttacatattatc 104  Q
    |||||||||||||| |||||||||| ||||||||| | | |||||||||||| ||||||||||| ||||||| || ||||| ||||||||||||||    
T  47203 tgtgaatgatgaat-caatgaccaccgtgtcaacacaaaataatgtaaatatctaattttaattctgtgtgcttatttattatgttacatattatc 47297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 40160 - 40220
Alignment:
Q  12 tgaatgatgaattcaatgaccacagtgtcaacagagataatgtaaatatgtaattttaatt 72  Q
    ||||||||||||||||||||||  |||||||||  ||||||||||||||||||||||||||    
T  40160 tgaatgatgaattcaatgaccatggtgtcaacactgataatgtaaatatgtaattttaatt 40220  T

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Target: scaffold0019 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 89
Target Start/End: Complemental strand, 54766 - 54687
Alignment:
Q  10 tgtgaatgatgaattcaatgaccacagtgtcaacagagataatgtaaatatgtaattttaattatgtgtgcgtacttatt 89  Q
    |||||||||||||||||| |||||| |||||||||   ||| | ||||||||||||||||||| ||||||| || |||||    
T  54766 tgtgaatgatgaattcaacgaccacggtgtcaacactcatattataaatatgtaattttaattctgtgtgcttatttatt 54687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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