View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0715_low_9 (Length: 432)

Name: NF0715_low_9
Description: NF0715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0715_low_9
NF0715_low_9
[»] chr1 (2 HSPs)
chr1 (30-396)||(50388322-50388688)
chr1 (122-225)||(50383249-50383350)


Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 30 - 396
Target Start/End: Original strand, 50388322 - 50388688
Alignment:
Q  30 gcaataggataagatctcaaacgtcattgtccttcatggcattgatccaccttttagaatttgaattttccatgaccgcatcatcatcaattaactttgt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50388322 gcaataggataagatctcaaacgtcattgtccttcatggcattgatccaccttttagaatttgaattttccatgaccgcatcatcatcaattaactttgt 50388421  T
Q  130 tttttcgaaaaataatttccaatagagctggatttcgatgccggggaaatgatgccattgtccccatataacttagtctaaaaattagaatcaaatccat 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  50388422 tttttcgaaaaataatttccaatagagctggatttcgatgccggggaaatgatgccattgtccccatatatcttagtctaaaaattagaatcaaatccat 50388521  T
Q  230 ctgttggtacacaagcaaatgtaaataggaggaaaacttcattttcgttcagacaaatataaaggatcagttgtttagatactctacaaaaaattcatat 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50388522 ctgttggtacacaagcaaatgtaaataggaggaaaacttcattttcgttcagacaaatataaaggatcagttgtttagatactctacaaaaaattcatat 50388621  T
Q  330 ttacgtacgatcaaatatttgttttgatactttgtaaatggaaattgatcatttttaaaatgaaatt 396  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50388622 ttacgtacgatcaaatatttgttttgatactttgtaaatggaaattgatcatttttaaaatgaaatt 50388688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 122 - 225
Target Start/End: Original strand, 50383249 - 50383350
Alignment:
Q  122 aactttgttttttcgaaaaataatttccaatagagctggatttcgatgccggggaaatgatgccattgtccccatataacttagtctaaaaattagaatc 221  Q
    ||||| ||||||| ||||||| ||||||| |||| |  |||  |||||||||| |||||||| ||||| ||||| ||| |||||||||||||||||||||    
T  50383249 aacttcgttttttggaaaaatgatttccattagaaccagat--cgatgccgggtaaatgatgtcattgaccccagatatcttagtctaaaaattagaatc 50383346  T
Q  222 aaat 225  Q
    ||||    
T  50383347 aaat 50383350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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