View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0716_low_1 (Length: 767)

Name: NF0716_low_1
Description: NF0716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0716_low_1
NF0716_low_1
[»] chr2 (32 HSPs)
chr2 (223-399)||(9230968-9231145)
chr2 (432-738)||(9231139-9231458)
chr2 (14-132)||(9230760-9230878)
chr2 (525-640)||(28254285-28254400)
chr2 (525-696)||(42514644-42514818)
chr2 (525-640)||(28531362-28531477)
chr2 (525-639)||(40679678-40679792)
chr2 (525-708)||(962593-962778)
chr2 (530-640)||(36178653-36178763)
chr2 (523-608)||(40733510-40733595)
chr2 (532-608)||(6712978-6713054)
chr2 (525-633)||(16542444-16542552)
chr2 (530-708)||(37105924-37106105)
chr2 (525-600)||(38796306-38796381)
chr2 (525-619)||(15880258-15880352)
chr2 (530-640)||(37106188-37106298)
chr2 (546-619)||(6422126-6422199)
chr2 (527-640)||(7598225-7598338)
chr2 (530-619)||(14745736-14745825)
chr2 (525-619)||(31468819-31468909)
chr2 (525-618)||(31899496-31899589)
chr2 (525-640)||(15511543-15511656)
chr2 (546-620)||(28254180-28254254)
chr2 (525-579)||(35580832-35580886)
chr2 (525-619)||(36005949-36006042)
chr2 (525-579)||(36785672-36785726)
chr2 (525-611)||(37632674-37632760)
chr2 (525-579)||(37895170-37895224)
chr2 (542-608)||(40163453-40163519)
chr2 (527-640)||(1769889-1770002)
chr2 (652-709)||(5542601-5542658)
chr2 (530-619)||(41283544-41283633)
[»] chr4 (34 HSPs)
chr4 (525-638)||(3244499-3244612)
chr4 (525-640)||(25483331-25483446)
chr4 (525-603)||(54741261-54741339)
chr4 (530-626)||(41370357-41370453)
chr4 (525-640)||(1731693-1731808)
chr4 (525-640)||(36629232-36629347)
chr4 (525-619)||(2740695-2740789)
chr4 (525-619)||(22183331-22183425)
chr4 (525-619)||(52884882-52884976)
chr4 (527-619)||(54017662-54017754)
chr4 (528-603)||(2741069-2741144)
chr4 (531-598)||(16889624-16889691)
chr4 (525-640)||(22028007-22028122)
chr4 (525-640)||(34646695-34646810)
chr4 (528-685)||(49302902-49303064)
chr4 (525-619)||(4955384-4955478)
chr4 (525-619)||(10246342-10246436)
chr4 (553-619)||(18932816-18932882)
chr4 (525-579)||(39792967-39793021)
chr4 (542-640)||(50630801-50630899)
chr4 (530-640)||(55933170-55933280)
chr4 (531-580)||(16888922-16888971)
chr4 (652-688)||(43827564-43827600)
chr4 (525-690)||(50002421-50002589)
chr4 (542-625)||(20826229-20826312)
chr4 (525-579)||(3700360-3700414)
chr4 (525-619)||(36572014-36572108)
chr4 (652-706)||(44620784-44620838)
chr4 (525-579)||(45489438-45489492)
chr4 (525-579)||(52884690-52884744)
chr4 (545-619)||(54108928-54109002)
chr4 (542-599)||(6975543-6975600)
chr4 (655-696)||(39404146-39404187)
chr4 (657-714)||(51768029-51768086)
[»] chr7 (29 HSPs)
chr7 (525-619)||(16569191-16569285)
chr7 (525-619)||(16596377-16596471)
chr7 (525-618)||(28301613-28301706)
chr7 (525-640)||(7517575-7517690)
chr7 (532-619)||(47129097-47129184)
chr7 (525-619)||(1085685-1085779)
chr7 (525-625)||(24177430-24177530)
chr7 (523-611)||(40230368-40230456)
chr7 (525-640)||(7554020-7554135)
chr7 (525-640)||(8128489-8128604)
chr7 (542-640)||(6054572-6054670)
chr7 (525-619)||(40094843-40094937)
chr7 (525-625)||(41910657-41910757)
chr7 (525-640)||(30244265-30244380)
chr7 (525-640)||(34218082-34218197)
chr7 (649-700)||(37393180-37393231)
chr7 (525-619)||(22566731-22566825)
chr7 (523-619)||(36622953-36623049)
chr7 (525-640)||(23425-23540)
chr7 (652-695)||(30032692-30032735)
chr7 (525-600)||(30244696-30244771)
chr7 (525-572)||(36967345-36967392)
chr7 (525-640)||(45754711-45754825)
chr7 (525-579)||(118410-118464)
chr7 (527-569)||(10341829-10341871)
chr7 (525-579)||(36109026-36109080)
chr7 (525-603)||(45434631-45434709)
chr7 (530-619)||(37533079-37533168)
chr7 (655-688)||(41910583-41910616)
[»] scaffold0078 (2 HSPs)
scaffold0078 (525-640)||(5352-5467)
scaffold0078 (525-618)||(4977-5070)
[»] chr6 (23 HSPs)
chr6 (525-640)||(2579920-2580035)
chr6 (525-619)||(10074060-10074154)
chr6 (530-638)||(26544049-26544157)
chr6 (525-640)||(10074411-10074526)
chr6 (530-640)||(35210204-35210314)
chr6 (655-708)||(2843683-2843736)
chr6 (652-708)||(16455032-16455088)
chr6 (525-640)||(2578883-2578997)
chr6 (525-640)||(16107673-16107788)
chr6 (530-640)||(2378126-2378236)
chr6 (530-640)||(14748386-14748496)
chr6 (525-619)||(16108058-16108152)
chr6 (530-640)||(29518503-29518613)
chr6 (530-640)||(29518920-29519030)
chr6 (530-640)||(32741179-32741289)
chr6 (532-640)||(2377756-2377864)
chr6 (525-708)||(2578420-2578605)
chr6 (652-696)||(16454700-16454744)
chr6 (530-688)||(1846748-1846909)
chr6 (530-617)||(3409660-3409747)
chr6 (530-640)||(3409259-3409369)
chr6 (525-639)||(16454570-16454684)
chr6 (542-576)||(17135181-17135215)
[»] chr5 (27 HSPs)
chr5 (525-640)||(41632777-41632892)
chr5 (542-640)||(9498702-9498800)
chr5 (525-619)||(26075231-26075325)
chr5 (525-640)||(26074194-26074309)
chr5 (525-600)||(39309679-39309754)
chr5 (525-579)||(36568676-36568730)
chr5 (542-640)||(41170646-41170744)
chr5 (525-569)||(31509618-31509662)
chr5 (525-608)||(1028597-1028680)
chr5 (525-640)||(15370094-15370209)
chr5 (526-617)||(40296386-40296477)
chr5 (532-599)||(42524719-42524785)
chr5 (525-619)||(6224191-6224285)
chr5 (525-619)||(42508607-42508701)
chr5 (655-707)||(3295323-3295375)
chr5 (533-625)||(41635254-41635346)
chr5 (525-640)||(12662700-12662815)
chr5 (525-608)||(13415840-13415923)
chr5 (532-619)||(18603189-18603276)
chr5 (525-640)||(26074607-26074722)
chr5 (541-640)||(33747782-33747881)
chr5 (533-640)||(35914852-35914959)
chr5 (652-695)||(42405588-42405631)
chr5 (525-619)||(299484-299578)
chr5 (530-579)||(623818-623867)
chr5 (655-708)||(27502013-27502066)
chr5 (542-619)||(34753094-34753171)
[»] chr1 (30 HSPs)
chr1 (525-603)||(22077580-22077658)
chr1 (525-619)||(41184494-41184588)
chr1 (525-611)||(21378118-21378204)
chr1 (530-619)||(44290527-44290616)
chr1 (525-640)||(17294572-17294687)
chr1 (525-596)||(24600406-24600477)
chr1 (525-640)||(34364920-34365035)
chr1 (525-640)||(41157370-41157485)
chr1 (525-619)||(34364502-34364596)
chr1 (523-616)||(22077900-22077993)
chr1 (530-619)||(44290894-44290983)
chr1 (528-619)||(41142370-41142461)
chr1 (525-619)||(5320034-5320128)
chr1 (542-599)||(5528843-5528900)
chr1 (652-697)||(11977405-11977450)
chr1 (649-697)||(5528742-5528790)
chr1 (525-640)||(37556106-37556221)
chr1 (530-609)||(3537226-3537305)
chr1 (652-695)||(44290814-44290857)
chr1 (525-572)||(44685451-44685498)
chr1 (525-580)||(45839622-45839676)
chr1 (533-608)||(50052103-50052178)
chr1 (525-579)||(66581-66635)
chr1 (525-619)||(3875400-3875494)
chr1 (525-567)||(22077243-22077285)
chr1 (525-619)||(24132054-24132148)
chr1 (525-579)||(39066309-39066363)
chr1 (524-569)||(1187483-1187528)
chr1 (654-695)||(44290448-44290489)
chr1 (526-603)||(45084378-45084455)
[»] chr8 (29 HSPs)
chr8 (525-640)||(30359266-30359381)
chr8 (523-610)||(40518575-40518662)
chr8 (525-619)||(9608740-9608834)
chr8 (525-626)||(41972153-41972254)
chr8 (525-640)||(33113415-33113530)
chr8 (533-640)||(43274827-43274934)
chr8 (533-639)||(147454-147560)
chr8 (525-619)||(5420646-5420740)
chr8 (525-619)||(9309350-9309444)
chr8 (542-619)||(70343-70420)
chr8 (525-608)||(8794106-8794189)
chr8 (525-640)||(30359604-30359719)
chr8 (542-692)||(43398062-43398217)
chr8 (524-579)||(45122166-45122221)
chr8 (525-579)||(147824-147878)
chr8 (525-619)||(3038359-3038453)
chr8 (553-619)||(9609108-9609174)
chr8 (652-708)||(5915992-5916047)
chr8 (649-685)||(6732017-6732053)
chr8 (525-625)||(9620739-9620839)
chr8 (524-611)||(1513992-1514079)
chr8 (525-603)||(6876947-6877026)
chr8 (525-616)||(9308972-9309065)
chr8 (525-563)||(18645712-18645750)
chr8 (542-640)||(34835221-34835319)
chr8 (650-695)||(9309104-9309149)
chr8 (650-695)||(9309477-9309522)
chr8 (543-640)||(20870621-20870718)
chr8 (652-685)||(37544490-37544523)
[»] scaffold0734 (1 HSPs)
scaffold0734 (525-619)||(5772-5866)
[»] chr3 (36 HSPs)
chr3 (655-708)||(15773322-15773375)
chr3 (525-640)||(12114610-12114725)
chr3 (525-640)||(39914247-39914362)
chr3 (525-620)||(49336755-49336850)
chr3 (530-603)||(37726504-37726577)
chr3 (525-640)||(32462948-32463064)
chr3 (525-640)||(9240144-9240259)
chr3 (528-619)||(21832412-21832503)
chr3 (525-640)||(37991025-37991140)
chr3 (552-639)||(41359814-41359901)
chr3 (526-611)||(1634391-1634477)
chr3 (525-603)||(8327899-8327977)
chr3 (530-640)||(22304569-22304679)
chr3 (525-603)||(25739510-25739588)
chr3 (525-579)||(33175773-33175827)
chr3 (525-619)||(35946517-35946611)
chr3 (526-611)||(7767391-7767476)
chr3 (527-640)||(15772851-15772964)
chr3 (525-626)||(15773187-15773288)
chr3 (652-701)||(25755519-25755568)
chr3 (521-566)||(39336351-39336396)
chr3 (525-569)||(12747871-12747915)
chr3 (656-695)||(37726625-37726664)
chr3 (525-640)||(37990687-37990802)
chr3 (525-640)||(54017864-54017979)
chr3 (530-640)||(4823655-4823765)
chr3 (525-599)||(25755389-25755463)
chr3 (525-611)||(29644658-29644744)
chr3 (525-611)||(29644979-29645065)
chr3 (525-611)||(33803329-33803415)
chr3 (652-694)||(42342081-42342123)
chr3 (525-619)||(42342159-42342253)
chr3 (525-619)||(52634671-52634764)
chr3 (525-579)||(53577359-53577413)
chr3 (655-708)||(9239941-9239994)
chr3 (530-603)||(51886561-51886634)
[»] scaffold0171 (1 HSPs)
scaffold0171 (525-619)||(17525-17619)
[»] scaffold0702 (1 HSPs)
scaffold0702 (532-640)||(562-670)
[»] scaffold0027 (2 HSPs)
scaffold0027 (526-640)||(47356-47470)
scaffold0027 (653-686)||(47486-47519)


Alignment Details
Target: chr2 (Bit Score: 158; Significance: 1e-83; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 223 - 399
Target Start/End: Original strand, 9230968 - 9231145
Alignment:
Q  223 ggactgtaatgatgttaattgatgaaagggtccctcattaagcaccggcctagttcatttcatttgtttcctttctatttggccacttgtccaatctctt 322  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9230968 ggactgtaatgatgttaattgatgaaagggtccctcattaagcaccggcctagttcatttcatttgtttcctttctatatggccacttgtccaatctctt 9231067  T
Q  323 caatgtccatttcatattttgctta-ttactagctagaagctacttacaaaccttaaatttggttaacaacttcactt 399  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  9231068 caatgtccatttcatattttgcttatttactagctagaagctacttccaaaccttaaatttggttaacaactacactt 9231145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 432 - 738
Target Start/End: Original strand, 9231139 - 9231458
Alignment:
Q  432 tacactttctatcttttacctcattcaggtacgtatacgcaaggctggtataaccacgaaatcatgcaatgtaattacattcaatatctac--------- 522  Q
    ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||             
T  9231139 tacactttctatcttttacctgattcaggtacgtatacgcaaggttggtataaccactaattcatgcaatgtaattacattcaatatctactgttgtgtg 9231238  T
Q  523 ---tattgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaa 619  Q
       | ||||||| |||||||| |||||||||||| ||| |||||||||||||| ||||||  ||||||||||||||||| ||||||||||| ||||||||    
T  9231239 taatgttgtgtgtaagtatgagttatatgtctcatatcagatagaaaagtaaaggttgaacatattataaataagaggatccatcaacccaccgccttaa 9231338  T
Q  620 aattttgattaagaatgtggt---tgaatatattatgcggttgttctaacctcgatgtggacgatcccccgaactccccttatgatccaacatctactag 716  Q
    | ||||| |||||| ||| ||   |   ||  |||||||||| ||||||||| |||||||||||| |||||| || |||| |||| ||| |||||||| |    
T  9231339 agttttggttaagagtgtagtatctctctaacttatgcggttattctaaccttgatgtggacgat-ccccgagct-ccctcatgacccagcatctactgg 9231436  T
Q  717 tactagaaaacattgctataat 738  Q
     |||||||||||||||||||||    
T  9231437 cactagaaaacattgctataat 9231458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 14 - 132
Target Start/End: Original strand, 9230760 - 9230878
Alignment:
Q  14 aggggctggaacagggcctatgtcacgagtgtacgacgtggaaagcatagccatgtgggaccacgtggattttttcatcttttgcaaaaggaagggttcc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9230760 aggggctggaacagggcctatgtcacgagtgtacgacgtggaaagcatagccatgtgggaccacgtggattttttcatcttttgcaaaaggaagggttcc 9230859  T
Q  114 caatgctatgtgtagacta 132  Q
    ||||||||||| |||||||    
T  9230860 caatgctatgtatagacta 9230878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 525 - 640
Target Start/End: Complemental strand, 28254400 - 28254285
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattt 624  Q
    |||||||| ||| ||||||||||||| ||||||||||||||||||||| ||||||  | |||||| ||||||||||||| ||| ||| |||||||  |||    
T  28254400 ttgtgtgccagtgtgacttatatgtcccacatcggatagaaaagtaaaggttgaacatcttataagtaagaggacccataaactcattgccttaaggttt 28254301  T
Q  625 tgattaagaatgtggt 640  Q
    ||  ||||| ||||||    
T  28254300 tgggtaagagtgtggt 28254285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 525 - 696
Target Start/End: Original strand, 42514644 - 42514818
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattt 624  Q
    |||| ||||||| ||| |||||||||  ||||| |||||||||||||| ||||||    |||||| ||||||||||||| ||||||||||||||| ||||    
T  42514644 ttgtatgcaagtgtgagttatatgtcctacatcagatagaaaagtaaaggttgaacaccttataagtaagaggacccataaacccatcgccttaagattt 42514743  T
Q  625 tgattaagaatgtggttgaatatatta----tgcggttgttctaacctcgatgtggacgatcccccgaactcccct 696  Q
    ||  ||||| |||||  |  | | |||    || |||||||||| |||||||||||||| |||||||| |||||||    
T  42514744 tgggtaagagtgtggc-gtctctcttacttgtggggttgttctagcctcgatgtggacggtcccccgagctcccct 42514818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 525 - 640
Target Start/End: Complemental strand, 28531477 - 28531362
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattt 624  Q
    |||||||||||| ||| ||||||||| ||||||||||||||||| ||| ||||||    |||||| ||||||| ||||| ||| ||| ||||||| ||||    
T  28531477 ttgtgtgcaagtgtgagttatatgtcccacatcggatagaaaagcaaaggttgaacaccttataagtaagaggtcccataaactcattgccttaagattt 28531378  T
Q  625 tgattaagaatgtggt 640  Q
    ||  ||||| ||||||    
T  28531377 tgggtaagagtgtggt 28531362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 525 - 639
Target Start/End: Complemental strand, 40679792 - 40679678
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattt 624  Q
    |||||||||| | ||| ||||||||| || |||||||||||||||||  ||||||    |||||| |||||| |||||| ||||||||||||||| ||||    
T  40679792 ttgtgtgcaaatgtgagttatatgtcccatatcggatagaaaagtaagggttgaacaccttataagtaagagaacccataaacccatcgccttaagattt 40679693  T
Q  625 tgattaagaatgtgg 639  Q
    ||  ||||| |||||    
T  40679692 tgggtaagagtgtgg 40679678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 525 - 708
Target Start/End: Original strand, 962593 - 962778
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattt 624  Q
    |||| ||||||| ||| ||||||||| ||||||||||||||||||||| ||||||    |||||| | ||||||||||| ||||||| | |||||  |||    
T  962593 ttgtatgcaagtgtgagttatatgtcccacatcggatagaaaagtaaaggttgaacaccttataagtgagaggacccataaacccattgtcttaaggttt 962692  T
Q  625 tgattaagaatgtggt-tgaatat--attatgcggttgttctaacctcgatgtggacgatcccccgaactccccttatgatccaaca 708  Q
    ||  ||||| |||| | | | | |   || || |||||||||| |||||||||||||| || ||||||||||||  |||||||||||    
T  962693 tgggtaagagtgtgttgtcactcttgcttgtgtggttgttctagcctcgatgtggacggtctcccgaactcccc-catgatccaaca 962778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 530 - 640
Target Start/End: Complemental strand, 36178763 - 36178653
Alignment:
Q  530 tgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattttgatt 629  Q
    ||||||| ||| ||||||||| ||||||||||| || |||||| ||||||    |||||| ||||||||||||| ||||||| |||||||  |||||  |    
T  36178763 tgcaagtgtgagttatatgtcccacatcggataaaatagtaaaggttgaacaccttataagtaagaggacccataaacccattgccttaaggttttgggt 36178664  T
Q  630 aagaatgtggt 640  Q
    |||| ||||||    
T  36178663 aagagtgtggt 36178653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 523 - 608
Target Start/End: Original strand, 40733510 - 40733595
Alignment:
Q  523 tattgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacc 608  Q
    |||||||| ||||| ||| ||||||||| |||||| |||| ||||||||||||||||    |||||| ||||||||||||| ||||    
T  40733510 tattgtgtacaagtgtgagttatatgtcccacatcagataaaaaagtaaatgttgaacaccttataagtaagaggacccataaacc 40733595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 532 - 608
Target Start/End: Original strand, 6712978 - 6713054
Alignment:
Q  532 caagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacc 608  Q
    ||||| ||| ||||||||||||||||||||| || |||||||||||||    |||||| ||||||||||||| ||||    
T  6712978 caagtgtgagttatatgtctcacatcggataaaacagtaaatgttgaacaccttataagtaagaggacccataaacc 6713054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 525 - 633
Target Start/End: Original strand, 16542444 - 16542552
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattt 624  Q
    |||||||||||| ||| ||||| ||| ||||||||||| || |||||| ||||||    ||||||||||||||||  || ||| ||| ||||||| ||||    
T  16542444 ttgtgtgcaagtgtgagttataagtcccacatcggataaaatagtaaaggttgaacaccttataaataagaggacttataaactcattgccttaagattt 16542543  T
Q  625 tgattaaga 633  Q
    ||| |||||    
T  16542544 tgagtaaga 16542552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 530 - 708
Target Start/End: Original strand, 37105924 - 37106105
Alignment:
Q  530 tgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattttgatt 629  Q
    ||||||| ||| ||||||||| ||||||| ||| || |||||| ||||||    |||||| |||| |||||||| ||| ||| ||||||| ||||||  |    
T  37105924 tgcaagtgtgagttatatgtcccacatcgaataaaatagtaaaggttgaacaccttataagtaaggggacccataaactcattgccttaagattttgggt 37106023  T
Q  630 aagaatgtggt---tgaatatattatgcggttgttctaacctcgatgtggacgatcccccgaactccccttatgatccaaca 708  Q
    |||| ||||||   |   |   || | ||||||||||| |||||||||||||| |||||||| |||||||| ||| ||||||    
T  37106024 aagagtgtggtgtctctcttgcttgtacggttgttctagcctcgatgtggacggtcccccgagctccccttgtgacccaaca 37106105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 525 - 600
Target Start/End: Complemental strand, 38796381 - 38796306
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacc 600  Q
    |||||||||||| ||| ||||||||| ||||||||||| || |||||||||||||    |||||| ||||||||||    
T  38796381 ttgtgtgcaagtgtgagttatatgtcccacatcggataaaacagtaaatgttgaacaccttataagtaagaggacc 38796306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 525 - 619
Target Start/End: Original strand, 15880258 - 15880352
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaa 619  Q
    |||||| ||||| ||| ||||||||  ||||||||||| || |||||| ||||||    |||||| ||||||||||||| ||||||| |||||||    
T  15880258 ttgtgtacaagtgtgagttatatgttccacatcggataaaagagtaaaggttgaacaccttataagtaagaggacccataaacccattgccttaa 15880352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 530 - 640
Target Start/End: Original strand, 37106188 - 37106298
Alignment:
Q  530 tgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattttgatt 629  Q
    ||||||| ||| ||||||||| ||||||||||| || |||||| ||||||    |||||| ||||||||||||| |||||||  ||||||  |||||  |    
T  37106188 tgcaagtgtgagttatatgtcccacatcggataaaatagtaaaggttgaacaccttataagtaagaggacccataaacccatttccttaaggttttgggt 37106287  T
Q  630 aagaatgtggt 640  Q
    |||| ||||||    
T  37106288 aagagtgtggt 37106298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 546 - 619
Target Start/End: Original strand, 6422126 - 6422199
Alignment:
Q  546 atgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaa 619  Q
    ||||| |||||| |||| ||||||||| ||||||   ||||||| ||||||||||||| ||||||| |||||||    
T  6422126 atgtcccacatcagataaaaaagtaaaggttgaacacattataattaagaggacccataaacccatagccttaa 6422199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 527 - 640
Target Start/End: Original strand, 7598225 - 7598338
Alignment:
Q  527 gtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattttg 626  Q
    |||||||||| ||| ||||||||   |||||| ||||||||||||| ||| ||    |||||||||||||||||||| ||| ||| |||||||  |||||    
T  7598225 gtgtgcaagtgtgaattatatgttctacatcgaatagaaaagtaaaggttcaacaccttataaataagaggacccataaactcatagccttaaggttttg 7598324  T
Q  627 attaagaatgtggt 640  Q
      ||||||| ||||    
T  7598325 ggtaagaatatggt 7598338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 530 - 619
Target Start/End: Complemental strand, 14745825 - 14745736
Alignment:
Q  530 tgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaa 619  Q
    ||||||| ||| ||||||||| ||||| ||||| || |||||| ||||||    |||||| ||||||||||||| ||||||| |||||||    
T  14745825 tgcaagtgtgagttatatgtcccacattggataaaatagtaaaggttgaacaccttataagtaagaggacccataaacccattgccttaa 14745736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 525 - 619
Target Start/End: Complemental strand, 31468909 - 31468819
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaa 619  Q
    |||||||||||| ||| ||||||||| ||||||||||| || |||||| ||||||| | ||    |||||||||||||| ||| ||| |||||||    
T  31468909 ttgtgtgcaagtgtgagttatatgtcccacatcggataaaatagtaaaggttgaatatctt----ataagaggacccataaactcattgccttaa 31468819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 525 - 618
Target Start/End: Complemental strand, 31899589 - 31899496
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgcctta 618  Q
    ||||||| |||| ||| ||||||||  ||||||||||| || |||||||||||||    |||||| ||||||||||||| ||| ||| ||||||    
T  31899589 ttgtgtgaaagtgtgagttatatgttccacatcggataaaatagtaaatgttgaacaccttataagtaagaggacccataaactcattgcctta 31899496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 525 - 640
Target Start/End: Complemental strand, 15511656 - 15511543
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattt 624  Q
    ||||||||||||  || ||||||||| |||| |||||| || |||||| ||||||    |||||| ||||||||||||| ||||||| | ||||| ||||    
T  15511656 ttgtgtgcaagt--gagttatatgtcacacaacggataaaagagtaaaggttgaacacgttataagtaagaggacccataaacccattgtcttaagattt 15511559  T
Q  625 tgattaagaatgtggt 640  Q
    ||  ||||| ||||||    
T  15511558 tgggtaagagtgtggt 15511543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 546 - 620
Target Start/End: Complemental strand, 28254254 - 28254180
Alignment:
Q  546 atgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaa 620  Q
    ||||||||||||||||||||||||||| ||||||    |||||| ||||||||| ||| ||| | | ||||||||    
T  28254254 atgtctcacatcggatagaaaagtaaaggttgaacactttataagtaagaggactcataaacactttgccttaaa 28254180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 525 - 579
Target Start/End: Complemental strand, 35580886 - 35580832
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaa 579  Q
    |||||||||||| ||| ||||||||| ||||||||||| || | |||||||||||    
T  35580886 ttgtgtgcaagtgtgagttatatgtcccacatcggataaaacaataaatgttgaa 35580832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 525 - 619
Target Start/End: Complemental strand, 36006042 - 36005949
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaa 619  Q
    |||||| ||||| ||| ||||||||| ||||||| ||||||| ||||| ||||||    |||||| ||||||||||||| ||| ||| |||||||    
T  36006042 ttgtgtacaagtgtgagttatatgtcccacatcgaatagaaa-gtaaaagttgaacaccttataagtaagaggacccataaactcattgccttaa 36005949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 525 - 579
Target Start/End: Complemental strand, 36785726 - 36785672
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaa 579  Q
    |||||||||||| ||| ||||||||| ||||||||||| || |||||| ||||||    
T  36785726 ttgtgtgcaagtgtgagttatatgtcccacatcggataaaatagtaaaggttgaa 36785672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 525 - 611
Target Start/End: Complemental strand, 37632760 - 37632674
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccat 611  Q
    |||||||||||| ||| |||||||||  |||||||||| || |||||| |||  |  | |||||| ||||||||||||| |||||||    
T  37632760 ttgtgtgcaagtgtgagttatatgtcctacatcggataaaatagtaaaggtttgacattttataagtaagaggacccataaacccat 37632674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 525 - 579
Target Start/End: Complemental strand, 37895224 - 37895170
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaa 579  Q
    |||||||| ||| ||| ||||||||| |||||||||||||||| |||| ||||||    
T  37895224 ttgtgtgcgagtttgagttatatgtcccacatcggatagaaaaataaaagttgaa 37895170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 542 - 608
Target Start/End: Complemental strand, 40163519 - 40163453
Alignment:
Q  542 ttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacc 608  Q
    ||||||||| ||||||||||||||||||||| ||||||    |||||| ||||| ||||||| ||||    
T  40163519 ttatatgtcccacatcggatagaaaagtaaaggttgaacaccttataagtaagatgacccattaacc 40163453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 640
Target Start/End: Original strand, 1769889 - 1770002
Alignment:
Q  527 gtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattttg 626  Q
    |||||||||| ||| ||||||||| ||||||||||| || |||||| ||||||    |||||| ||||||||| ||| ||| ||| || || ||  ||||    
T  1769889 gtgtgcaagtgtgagttatatgtcacacatcggataaaagagtaaaagttgaacaccttataagtaagaggactcataaactcatagctttgaagctttg 1769988  T
Q  627 attaagaatgtggt 640  Q
    | ||||| ||||||    
T  1769989 aataagagtgtggt 1770002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 652 - 709
Target Start/End: Complemental strand, 5542658 - 5542601
Alignment:
Q  652 tgcggttgttctaacctcgatgtggacgatcccccgaactccccttatgatccaacat 709  Q
    ||||||||||| |  ||||||||||||| |||||||| ||||||  ||||||||||||    
T  5542658 tgcggttgttcaagtctcgatgtggacggtcccccgagctccccccatgatccaacat 5542601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 530 - 619
Target Start/End: Complemental strand, 41283633 - 41283544
Alignment:
Q  530 tgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaa 619  Q
    ||||||| ||| ||||||||| || |||||||| || |||||| ||||||    |||||| ||||||||||||| ||| ||| |||||||    
T  41283633 tgcaagtgtgagttatatgtcccatatcggataaaatagtaaaggttgaacaccttataagtaagaggacccataaactcattgccttaa 41283544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 5e-24; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 525 - 638
Target Start/End: Complemental strand, 3244612 - 3244499
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattt 624  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||  | |||||| ||||||||||||| ||| ||| | |||||| |||    
T  3244612 ttgtgtgcaagtgtgagttatatgtctcacatcggatagaaaagtaaaggttgaacatcttataagtaagaggacccataaactcattgtcttaaagttt 3244513  T
Q  625 tgattaagaatgtg 638  Q
    ||  ||||||||||    
T  3244512 tgggtaagaatgtg 3244499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 525 - 640
Target Start/End: Original strand, 25483331 - 25483446
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattt 624  Q
    |||||||||||| ||| ||||||||||||||||||||| || |||||| ||||||  | |||||| |||||||| |||| ||||||| |||||||  |||    
T  25483331 ttgtgtgcaagtgtgagttatatgtctcacatcggataaaatagtaaaggttgaacatcttataagtaagaggatccataaacccattgccttaaggttt 25483430  T
Q  625 tgattaagaatgtggt 640  Q
    ||  ||||| ||||||    
T  25483431 tgggtaagagtgtggt 25483446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 525 - 603
Target Start/End: Complemental strand, 54741339 - 54741261
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccat 603  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||    |||||| |||||||||||||    
T  54741339 ttgtgtgcaagtgtgaattatatgtctcacatcggatagaaaagtaaaggttgaacaccttataagtaagaggacccat 54741261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 530 - 626
Target Start/End: Original strand, 41370357 - 41370453
Alignment:
Q  530 tgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattttg 626  Q
    ||||||| ||| ||||||||| || |||||||| || |||||||||||||    |||||| ||||||||||||| ||||||| |||||||| |||||    
T  41370357 tgcaagtgtgagttatatgtcccaaatcggataaaatagtaaatgttgaaaaccttataagtaagaggacccataaacccattgccttaaagttttg 41370453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 525 - 640
Target Start/End: Complemental strand, 1731808 - 1731693
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattt 624  Q
    |||||||||| | ||| ||||||||| |||||| |||| || |||||| ||||||  | |||||||||||||||||||| |||| || |||||||  |||    
T  1731808 ttgtgtgcaaatgtgagttatatgtcccacatcagataaaacagtaaaggttgaacatcttataaataagaggacccataaaccaattgccttaaggttt 1731709  T
Q  625 tgattaagaatgtggt 640  Q
    ||  ||||| ||||||    
T  1731708 tgggtaagagtgtggt 1731693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 525 - 640
Target Start/End: Original strand, 36629232 - 36629347
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattt 624  Q
    |||||| ||||| ||| ||||||||| ||||||||||||||||||||| ||| ||    |||||| ||||||||||||| ||| ||| |||||||  |||    
T  36629232 ttgtgttcaagtgtgagttatatgtcccacatcggatagaaaagtaaaagttaaacaccttataagtaagaggacccataaactcattgccttaaggttt 36629331  T
Q  625 tgattaagaatgtggt 640  Q
    ||  ||||| ||||||    
T  36629332 tgggtaagagtgtggt 36629347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 525 - 619
Target Start/End: Original strand, 2740695 - 2740789
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaa 619  Q
    |||||||||||| ||| ||||||||| |||||||||||||| |||||| ||||||    |||||| |||||||||| || ||||||  |||||||    
T  2740695 ttgtgtgcaagtgtgagttatatgtcccacatcggatagaacagtaaaggttgaacaccttataagtaagaggacctataaacccagagccttaa 2740789  T

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Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 525 - 619
Target Start/End: Complemental strand, 22183425 - 22183331
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaa 619  Q
    |||||||||||| ||| |||||| || ||||||||||| || |||||||||||||    |||||| ||| ||||||||| ||||||| |||||||    
T  22183425 ttgtgtgcaagtgtgagttatatatcccacatcggataaaagagtaaatgttgaacaatttataagtaaaaggacccataaacccattgccttaa 22183331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 525 - 619
Target Start/End: Original strand, 52884882 - 52884976
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaa 619  Q
    |||||||||||| ||| ||||||||| ||||||||||| || |||||| ||||||    |||||| |||||||| |||| ||||||| |||||||    
T  52884882 ttgtgtgcaagtgtgagttatatgtcccacatcggataaaatagtaaaggttgaacaccttataagtaagaggatccataaacccattgccttaa 52884976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 527 - 619
Target Start/End: Complemental strand, 54017754 - 54017662
Alignment:
Q  527 gtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaa 619  Q
    |||||||||| ||| ||||||||| ||| || |||| || |||||| ||||||  | |||||| ||||||||||||| ||||||| |||||||    
T  54017754 gtgtgcaagtgtgagttatatgtcccacgtcagataaaatagtaaaggttgaacatcttataagtaagaggacccataaacccattgccttaa 54017662  T

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Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 528 - 603
Target Start/End: Original strand, 2741069 - 2741144
Alignment:
Q  528 tgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccat 603  Q
    ||||||||| ||| ||||||||| |||||| ||||||| |||||| |||||||   |||||| |||||||||||||    
T  2741069 tgtgcaagtgtgagttatatgtcccacatcagatagaatagtaaaggttgaataccttataagtaagaggacccat 2741144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 531 - 598
Target Start/End: Complemental strand, 16889691 - 16889624
Alignment:
Q  531 gcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagagga 598  Q
    |||||| ||| |||||||||||| |||||||||||||||||| |||||||   |||||| ||||||||    
T  16889691 gcaagtgtgagttatatgtctcaaatcggatagaaaagtaaaggttgaataccttataagtaagagga 16889624  T

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Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 525 - 640
Target Start/End: Complemental strand, 22028122 - 22028007
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattt 624  Q
    |||||||||||| ||||||||||||| ||||||||||| || |  ||| ||||||    |||||| ||||||||||||| |||  || |||||||  |||    
T  22028122 ttgtgtgcaagtgtgacttatatgtcccacatcggataaaatacgaaaggttgaacaccttataagtaagaggacccataaacatattgccttaaggttt 22028023  T
Q  625 tgattaagaatgtggt 640  Q
    ||  ||||||||||||    
T  22028022 tgggtaagaatgtggt 22028007  T

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Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 525 - 640
Target Start/End: Complemental strand, 34646810 - 34646695
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattt 624  Q
    |||||| ||||| ||| ||||||||| ||||||||||| || |||||||||||||    |||||| ||||||||| ||| ||| ||| |||||||  |||    
T  34646810 ttgtgtacaagtgtgagttatatgtcccacatcggataaaacagtaaatgttgaacaccttataactaagaggactcataaactcattgccttaaggttt 34646711  T
Q  625 tgattaagaatgtggt 640  Q
    ||  ||||| ||||||    
T  34646710 tgggtaagagtgtggt 34646695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 528 - 685
Target Start/End: Original strand, 49302902 - 49303064
Alignment:
Q  528 tgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaa--taagaggacccatcaacccatcgccttaaaatttt 625  Q
    |||| |||| ||| ||||||||| ||||||  ||| ||||||||| ||||||  | |||||||  ||||||||||||| ||||||| |||||||  ||||    
T  49302902 tgtgtaagtgtgagttatatgtcccacatcaaataaaaaagtaaaggttgaacatcttataaaagtaagaggacccataaacccattgccttaaggtttt 49303001  T
Q  626 gattaagaatgtggttgaatat----attatgcggttgttctaacctcgatgtggacgatcccc 685  Q
    |  ||||| ||||| || || |     ||||||| |||||||| ||||||||||||||||||||    
T  49303002 gggtaagagtgtgg-tgtatctcttacttatgcgattgttctatcctcgatgtggacgatcccc 49303064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 525 - 619
Target Start/End: Complemental strand, 4955478 - 4955384
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaa 619  Q
    |||||||||||| ||| |||||||||||| |||||||| || ||| || ||||||    |||||| ||||||||| ||| ||||||| |||||||    
T  4955478 ttgtgtgcaagtgtgagttatatgtctcatatcggataaaatagttaaggttgaacaccttataagtaagaggactcataaacccattgccttaa 4955384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 525 - 619
Target Start/End: Original strand, 10246342 - 10246436
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaa 619  Q
    |||||||||||| |   |||||||||||| |||||||| || |||||| ||||||  | |||||| | ||||||||||| ||||||| |||||||    
T  10246342 ttgtgtgcaagtgtctgttatatgtctcaaatcggataaaagagtaaaggttgaacatcttataagttagaggacccataaacccatagccttaa 10246436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 553 - 619
Target Start/End: Complemental strand, 18932882 - 18932816
Alignment:
Q  553 acatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaa 619  Q
    |||||||||| || |||||| |||||||   |||||||||||||||||||| ||||||| |||||||    
T  18932882 acatcggataaaatagtaaaggttgaataccttataaataagaggacccataaacccattgccttaa 18932816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 525 - 579
Target Start/End: Complemental strand, 39793021 - 39792967
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaa 579  Q
    |||||| ||||| ||| ||||||||| |||||| |||||||||||||||||||||    
T  39793021 ttgtgtacaagtgtgagttatatgtcccacatcagatagaaaagtaaatgttgaa 39792967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 542 - 640
Target Start/End: Complemental strand, 50630899 - 50630801
Alignment:
Q  542 ttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattttgattaagaatgtggt 640  Q
    |||||||||  |||||||||| || |||||| ||||||   ||||||| ||||||||||||| ||||||| |||||||  |||||  ||||| ||||||    
T  50630899 ttatatgtcctacatcggataaaatagtaaaggttgaacacattataagtaagaggacccataaacccattgccttaaggttttgggtaagagtgtggt 50630801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 530 - 640
Target Start/End: Complemental strand, 55933280 - 55933170
Alignment:
Q  530 tgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattttgatt 629  Q
    ||||||| ||| |||||||||  |||||||||| || |||||  ||||||    |||||| ||||||||||||| ||||||| |||||||| |||||  |    
T  55933280 tgcaagtgtgagttatatgtcctacatcggataaaatagtaagggttgaacaccttataagtaagaggacccataaacccattgccttaaagttttgggt 55933181  T
Q  630 aagaatgtggt 640  Q
    |||| ||||||    
T  55933180 aagagtgtggt 55933170  T

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Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 531 - 580
Target Start/End: Complemental strand, 16888971 - 16888922
Alignment:
Q  531 gcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaat 580  Q
    |||||| ||| ||||||||| ||||||||||||||||||||| |||||||    
T  16888971 gcaagtgtgagttatatgtcccacatcggatagaaaagtaaaggttgaat 16888922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 652 - 688
Target Start/End: Original strand, 43827564 - 43827600
Alignment:
Q  652 tgcggttgttctaacctcgatgtggacgatcccccga 688  Q
    |||||||||||||||||||||||||||| ||||||||    
T  43827564 tgcggttgttctaacctcgatgtggacggtcccccga 43827600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 525 - 690
Target Start/End: Original strand, 50002421 - 50002589
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattt 624  Q
    |||| ||||||| ||| ||||||||||||||||||||| || |||||| ||||||    || ||| ||||||||||||| || |||| | |||||  |||    
T  50002421 ttgtttgcaagtgtgagttatatgtctcacatcggataaaagagtaaaggttgaacactttttaagtaagaggacccataaatccattgtcttaaggttt 50002520  T
Q  625 tgattaagaatgtggttgaatatatta----tgcggttgttctaacctcgatgtggacgatcccccgaac 690  Q
    ||  ||||| ||||| ||  | | |||    ||||||||||||| ||||||||||| || ||||||||||    
T  50002521 tgggtaagagtgtgg-tgtctctcttacttgtgcggttgttctagcctcgatgtgggcggtcccccgaac 50002589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 542 - 625
Target Start/End: Original strand, 20826229 - 20826312
Alignment:
Q  542 ttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaatttt 625  Q
    ||||||||| ||||||||||| || |||||| ||||||    |||||| |||||| |||||| ||||||| ||||||| |||||    
T  20826229 ttatatgtcccacatcggataaaatagtaaaagttgaacacgttataagtaagagaacccataaacccatagccttaacatttt 20826312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 525 - 579
Target Start/End: Original strand, 3700360 - 3700414
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaa 579  Q
    |||||||||||| ||| |||||||||  |||||||||| || |||||||||||||    
T  3700360 ttgtgtgcaagtgtgagttatatgtcctacatcggataaaagagtaaatgttgaa 3700414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 525 - 619
Target Start/End: Original strand, 36572014 - 36572108
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaa 619  Q
    |||||| ||||| ||| ||||||||| ||||||| ||| || |||||||||||||    |||||| ||||| ||||||| || |||| |||||||    
T  36572014 ttgtgtacaagtgtgagttatatgtcccacatcgaataaaagagtaaatgttgaacaccttataagtaagaagacccataaatccattgccttaa 36572108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 652 - 706
Target Start/End: Original strand, 44620784 - 44620838
Alignment:
Q  652 tgcggttgttctaacctcgatgtggacgatcccccgaactccccttatgatccaa 706  Q
    |||||||||| || |||||||||||||| |||||| | ||||||| |||||||||    
T  44620784 tgcggttgttatatcctcgatgtggacggtcccccaagctcccctcatgatccaa 44620838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 525 - 579
Target Start/End: Complemental strand, 45489492 - 45489438
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaa 579  Q
    |||||| ||||| ||| ||||||||||||||||||||| || |||||| ||||||    
T  45489492 ttgtgtacaagtgtgaattatatgtctcacatcggataaaagagtaaaggttgaa 45489438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 525 - 579
Target Start/End: Original strand, 52884690 - 52884744
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaa 579  Q
    |||||||||||| ||| ||||||||| ||||||||||| || |||||| ||||||    
T  52884690 ttgtgtgcaagtgtgagttatatgtcccacatcggataaaatagtaaaggttgaa 52884744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 545 - 619
Target Start/End: Original strand, 54108928 - 54109002
Alignment:
Q  545 tatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaa 619  Q
    |||||| ||||||||||| || |||||| ||||||    |||||| ||||||||||||| ||||||| |||||||    
T  54108928 tatgtcccacatcggataaaatagtaaaggttgaacaccttataagtaagaggacccataaacccattgccttaa 54109002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 542 - 599
Target Start/End: Complemental strand, 6975600 - 6975543
Alignment:
Q  542 ttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggac 599  Q
    |||||||||||||||| |||| || |||||| ||||||| | |||||| |||||||||    
T  6975600 ttatatgtctcacatccgataaaatagtaaaggttgaatatcttataagtaagaggac 6975543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 655 - 696
Target Start/End: Original strand, 39404146 - 39404187
Alignment:
Q  655 ggttgttctaacctcgatgtggacgatcccccgaactcccct 696  Q
    |||||||||| |||||||||||||| |||||||| |||||||    
T  39404146 ggttgttctagcctcgatgtggacggtcccccgagctcccct 39404187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 657 - 714
Target Start/End: Complemental strand, 51768086 - 51768029
Alignment:
Q  657 ttgttctaacctcgatgtggacgatcccccgaactccccttatgatccaacatctact 714  Q
    ||||||||||||||||||||||| || ||| |||| |||| |||| ||||||| ||||    
T  51768086 ttgttctaacctcgatgtggacggtctcccaaacttccctcatgacccaacatatact 51768029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 8e-20; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 525 - 619
Target Start/End: Original strand, 16569191 - 16569285
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaa 619  Q
    |||| ||||||| ||| |||||||||||||||||||||||| |||||| |||||||   |||||| ||||||||||||| ||||||| |||||||    
T  16569191 ttgtatgcaagtgtgagttatatgtctcacatcggatagaacagtaaaggttgaataccttataagtaagaggacccataaacccattgccttaa 16569285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 525 - 619
Target Start/End: Complemental strand, 16596471 - 16596377
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaa 619  Q
    |||| ||||||| ||| |||||||||||||||||||||||| |||||| |||||||   |||||| ||||||||||||| ||||||| |||||||    
T  16596471 ttgtatgcaagtgtgagttatatgtctcacatcggatagaacagtaaaggttgaataccttataagtaagaggacccataaacccattgccttaa 16596377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 525 - 618
Target Start/End: Complemental strand, 28301706 - 28301613
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgcctta 618  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||| | ||||    |||||| ||||||||||||| ||||||| ||||||    
T  28301706 ttgtgtgcaagtgtgagttatatgtctcacatcggatagaaaagtaaaagctgaacaccttataagtaagaggacccataaacccattgcctta 28301613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 525 - 640
Target Start/End: Original strand, 7517575 - 7517690
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattt 624  Q
    |||||||||||| ||| ||||||||| ||||||||||| || |||||| ||||||    |||||| ||||||||||||| ||||||| |||||||  |||    
T  7517575 ttgtgtgcaagtgtgagttatatgtcccacatcggataaaagagtaaaggttgaacaccttataagtaagaggacccataaacccattgccttaaggttt 7517674  T
Q  625 tgattaagaatgtggt 640  Q
    ||  ||||| ||||||    
T  7517675 tgggtaagagtgtggt 7517690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 532 - 619
Target Start/End: Original strand, 47129097 - 47129184
Alignment:
Q  532 caagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaa 619  Q
    ||||| ||| ||||||||||||||||||||| || |||||| ||||||  | |||||| ||||||||||||| |||||||||| ||||    
T  47129097 caagtgtgagttatatgtctcacatcggataaaatagtaaaggttgaacctcttataagtaagaggacccataaacccatcgctttaa 47129184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 525 - 619
Target Start/End: Complemental strand, 1085779 - 1085685
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaa 619  Q
    |||||||||||| ||| ||||||||| ||||||||||| || |||||| ||||||    |||||| ||||||||||||| ||||||| |||||||    
T  1085779 ttgtgtgcaagtgtgagttatatgtcccacatcggataaaatagtaaaggttgaacactttataagtaagaggacccataaacccattgccttaa 1085685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 525 - 625
Target Start/End: Original strand, 24177430 - 24177530
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattt 624  Q
    |||||||||||||||| ||||||||| ||||||||||| || |||||| | ||||    |||||| |||| |||||||| ||||||| |||||||| |||    
T  24177430 ttgtgtgcaagtatgagttatatgtcccacatcggataaaagagtaaaggctgaacaccttataagtaagcggacccataaacccattgccttaaagttt 24177529  T
Q  625 t 625  Q
    |    
T  24177530 t 24177530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 523 - 611
Target Start/End: Complemental strand, 40230456 - 40230368
Alignment:
Q  523 tattgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccat 611  Q
    |||||||||||||| | | ||||||||| ||||||| ||| ||||||||| ||||||  | |||||| ||||||||||||| |||||||    
T  40230456 tattgtgtgcaagtgtaagttatatgtcccacatcgaataaaaaagtaaaagttgaacatcttataagtaagaggacccataaacccat 40230368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 525 - 640
Target Start/End: Original strand, 7554020 - 7554135
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattt 624  Q
    |||||||||||| ||| ||||||||| ||||||||||| || |||||| ||||||    |||||| |||||||| |||| ||||||| |||||||  |||    
T  7554020 ttgtgtgcaagtgtgagttatatgtcccacatcggataaaatagtaaaggttgaacaccttataagtaagaggatccataaacccatagccttaaggttt 7554119  T
Q  625 tgattaagaatgtggt 640  Q
    ||  ||||| ||||||    
T  7554120 tgggtaagagtgtggt 7554135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 525 - 640
Target Start/End: Complemental strand, 8128604 - 8128489
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattt 624  Q
    |||||||||||| ||| ||||||||| || ||||||||||||| |||| ||||||    |||||  ||||||||||||| |||||||  ||||||  |||    
T  8128604 ttgtgtgcaagtgtgagttatatgtcccatatcggatagaaaaataaaggttgaacaccttatatgtaagaggacccataaacccataaccttaaggttt 8128505  T
Q  625 tgattaagaatgtggt 640  Q
    || |||||| ||||||    
T  8128504 tggttaagagtgtggt 8128489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 542 - 640
Target Start/End: Original strand, 6054572 - 6054670
Alignment:
Q  542 ttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattttgattaagaatgtggt 640  Q
    ||||||||||||||||||||| || |||||||||||||    |||||| ||||||||||||| ||| ||| |||||||  |||||  ||||| ||||||    
T  6054572 ttatatgtctcacatcggataaaatagtaaatgttgaacaccttataagtaagaggacccataaacacattgccttaaggttttgggtaagagtgtggt 6054670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 525 - 619
Target Start/End: Complemental strand, 40094937 - 40094843
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaa 619  Q
    |||||||||||| ||| ||||||||||||||||| ||| || |||||| ||| ||    |||||| ||||||||||||| ||||||||| |||||    
T  40094937 ttgtgtgcaagtgtgagttatatgtctcacatcgaataaaagagtaaaggttcaacaccttataagtaagaggacccataaacccatcgtcttaa 40094843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 525 - 625
Target Start/End: Complemental strand, 41910757 - 41910657
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattt 624  Q
    ||||||| |||| ||| ||||||||| ||||||||||| || |||||| |||||||   |||||| | ||||||||||| ||||||| | ||||| ||||    
T  41910757 ttgtgtgtaagtgtgagttatatgtcccacatcggataaaagagtaaaggttgaataccttataactgagaggacccataaacccattggcttaagattt 41910658  T
Q  625 t 625  Q
    |    
T  41910657 t 41910657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 525 - 640
Target Start/End: Original strand, 30244265 - 30244380
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattt 624  Q
    |||||| ||||| ||| ||||||||| ||||||||||| || |||||| ||||||    |||||| ||||||||| ||| ||||||| |||||||  |||    
T  30244265 ttgtgtacaagtgtgagttatatgtcccacatcggataaaagagtaaaggttgaagaccttataagtaagaggactcataaacccattgccttaaggttt 30244364  T
Q  625 tgattaagaatgtggt 640  Q
    ||  ||||| ||||||    
T  30244365 tgggtaagagtgtggt 30244380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 525 - 640
Target Start/End: Complemental strand, 34218197 - 34218082
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattt 624  Q
    |||||| ||| | ||| ||||||||||||||||||||| ||||||||||||||||    |||||| | ||||||| ||| ||||||| | |||||  |||    
T  34218197 ttgtgtacaaatgtgagttatatgtctcacatcggataaaaaagtaaatgttgaacaccttataagtgagaggactcataaacccattgtcttaaggttt 34218098  T
Q  625 tgattaagaatgtggt 640  Q
    ||  ||||| ||||||    
T  34218097 tgggtaagagtgtggt 34218082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 649 - 700
Target Start/End: Original strand, 37393180 - 37393231
Alignment:
Q  649 ttatgcggttgttctaacctcgatgtggacgatcccccgaactccccttatg 700  Q
    ||||| ||||| |||||||||||||||||||||||||||| || ||||||||    
T  37393180 ttatgtggttgctctaacctcgatgtggacgatcccccgaccttcccttatg 37393231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 525 - 619
Target Start/End: Complemental strand, 22566825 - 22566731
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaa 619  Q
    |||| ||||||| ||| | ||||||| ||||||||||| || |||||| ||||||    |||||| ||||||||||||| ||||||| |||||||    
T  22566825 ttgtatgcaagtgtgagtaatatgtcccacatcggataaaagagtaaaggttgaacaccttataagtaagaggacccataaacccattgccttaa 22566731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 523 - 619
Target Start/End: Original strand, 36622953 - 36623049
Alignment:
Q  523 tattgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaa 619  Q
    |||||||||||||| ||| ||||||||| ||||||||||| || |||||| ||| ||  | |||||| || ||||| |||| || |||| |||||||    
T  36622953 tattgtgtgcaagtgtgagttatatgtcccacatcggataaaatagtaaaggttaaacattttataagtaggaggatccataaatccattgccttaa 36623049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 525 - 640
Target Start/End: Complemental strand, 23540 - 23425
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattt 624  Q
    |||||||||| | ||| ||||||||  ||||||||||| || |||||| ||||||    |||||| ||||||||||||| |||| || |||||||  |||    
T  23540 ttgtgtgcaattgtgagttatatgttccacatcggatacaatagtaaaggttgaacaccttataagtaagaggacccataaacctattgccttaaggttt 23441  T
Q  625 tgattaagaatgtggt 640  Q
    ||  ||||| ||||||    
T  23440 tgggtaagagtgtggt 23425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 652 - 695
Target Start/End: Original strand, 30032692 - 30032735
Alignment:
Q  652 tgcggttgttctaacctcgatgtggacgatcccccgaactcccc 695  Q
    ||||||||||||| |||||||||||||| |||||||| ||||||    
T  30032692 tgcggttgttctatcctcgatgtggacggtcccccgagctcccc 30032735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 525 - 600
Target Start/End: Original strand, 30244696 - 30244771
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacc 600  Q
    |||||||||||| ||| ||||||||| ||||| ||||| || |||||| ||||||    |||||||||||||||||    
T  30244696 ttgtgtgcaagtgtgagttatatgtcccacattggataaaagagtaaaggttgaacaccttataaataagaggacc 30244771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 525 - 572
Target Start/End: Complemental strand, 36967392 - 36967345
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaa 572  Q
    |||||| ||||| ||| ||||||||||||||||||||| |||||||||    
T  36967392 ttgtgtacaagtgtgagttatatgtctcacatcggataaaaaagtaaa 36967345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 525 - 640
Target Start/End: Original strand, 45754711 - 45754825
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattt 624  Q
    |||||| ||||| ||| ||||||||| ||||||||||| || |||||||||||||    |||||| ||||| ||| ||| ||||||| |||||||  |||    
T  45754711 ttgtgtacaagtgtgagttatatgtc-cacatcggataaaatagtaaatgttgaacaccttataagtaagatgactcataaacccatagccttaaggttt 45754809  T
Q  625 tgattaagaatgtggt 640  Q
    ||  ||||| ||||||    
T  45754810 tgggtaagagtgtggt 45754825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 525 - 579
Target Start/End: Complemental strand, 118464 - 118410
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaa 579  Q
    |||||||||||| | | ||||||||| |||||| |||||||||||||| ||||||    
T  118464 ttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaagtaaaggttgaa 118410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 527 - 569
Target Start/End: Original strand, 10341829 - 10341871
Alignment:
Q  527 gtgtgcaagtatgacttatatgtctcacatcggatagaaaagt 569  Q
    |||||||| ||| | ||||||||||||||||||||||||||||    
T  10341829 gtgtgcaaatataagttatatgtctcacatcggatagaaaagt 10341871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 525 - 579
Target Start/End: Complemental strand, 36109080 - 36109026
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaa 579  Q
    |||||||||||| ||| |||||| |||||||||||||| || |||||| ||||||    
T  36109080 ttgtgtgcaagtgtgagttatatttctcacatcggataaaagagtaaaggttgaa 36109026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 525 - 603
Target Start/End: Original strand, 45434631 - 45434709
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccat 603  Q
    |||||| ||||| | | ||||||||| ||||||||||| ||||||||| ||||||    |||||| |||||||||||||    
T  45434631 ttgtgtacaagtgtaagttatatgtcccacatcggataaaaaagtaaaggttgaacaccttataagtaagaggacccat 45434709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 530 - 619
Target Start/End: Complemental strand, 37533168 - 37533079
Alignment:
Q  530 tgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaa 619  Q
    ||||||| ||| ||||||||| ||||| ||||| || |||||| ||||||    |||||| ||||||||||||| ||| ||| |||||||    
T  37533168 tgcaagtgtgagttatatgtcccacattggataaaatagtaaaggttgaacaccttataagtaagaggacccataaactcattgccttaa 37533079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 655 - 688
Target Start/End: Complemental strand, 41910616 - 41910583
Alignment:
Q  655 ggttgttctaacctcgatgtggacgatcccccga 688  Q
    |||||||||||||||||||||||||||| |||||    
T  41910616 ggttgttctaacctcgatgtggacgatctcccga 41910583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 525 - 640
Target Start/End: Original strand, 5352 - 5467
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattt 624  Q
    |||||||||||| ||| ||||||||  |||||||||||||| |||||| ||||||    |||||| ||||||||||||| ||||||| ||||||| ||||    
T  5352 ttgtgtgcaagtgtgagttatatgttccacatcggatagaacagtaaaggttgaacaccttataagtaagaggacccataaacccattgccttaagattt 5451  T
Q  625 tgattaagaatgtggt 640  Q
    ||  ||||| ||||||    
T  5452 tggataagagtgtggt 5467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 525 - 618
Target Start/End: Original strand, 4977 - 5070
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgcctta 618  Q
    |||||||||||| ||| ||||||||||||||||||| |||| |||||| ||| ||| | |||||| ||| | ||||||| ||| ||| ||||||    
T  4977 ttgtgtgcaagtgtgaattatatgtctcacatcggagagaacagtaaaggtttaatatcttataagtaaaaagacccataaactcattgcctta 5070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 5e-18; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 525 - 640
Target Start/End: Complemental strand, 2580035 - 2579920
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattt 624  Q
    |||||||||||| ||| ||||||||| ||||||||||| || |||||| ||||||   ||||||| ||||||||||||| ||||||  |||||||  |||    
T  2580035 ttgtgtgcaagtgtgagttatatgtcccacatcggataaaagagtaaaggttgaacacattataagtaagaggacccataaacccacagccttaaggttt 2579936  T
Q  625 tgattaagaatgtggt 640  Q
    ||  ||||||||||||    
T  2579935 tgggtaagaatgtggt 2579920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 525 - 619
Target Start/End: Complemental strand, 10074154 - 10074060
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaa 619  Q
    |||||||||||  ||| |||||| || ||||||||||||||||||||| ||||||    |||||| ||||||||||||| ||||||| |||||||    
T  10074154 ttgtgtgcaagggtgagttatatatcccacatcggatagaaaagtaaacgttgaacaccttataagtaagaggacccataaacccattgccttaa 10074060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 530 - 638
Target Start/End: Original strand, 26544049 - 26544157
Alignment:
Q  530 tgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattttgatt 629  Q
    ||||||| ||| ||||||||| ||||||||||| || |||||| ||||||    |||||| ||||||||||||| |||||| ||||||||  |||||| |    
T  26544049 tgcaagtgtgagttatatgtcccacatcggataaaatagtaaaggttgaacacgttataagtaagaggacccataaacccaccgccttaaggttttgagt 26544148  T
Q  630 aagaatgtg 638  Q
    |||| ||||    
T  26544149 aagagtgtg 26544157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 525 - 640
Target Start/End: Complemental strand, 10074526 - 10074411
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattt 624  Q
    |||||||||||| ||| ||| | ||| ||||||||||||||||||||| ||||||    |||||| ||||||||||||| ||| ||| |||||||  |||    
T  10074526 ttgtgtgcaagtgtgagttagaggtcccacatcggatagaaaagtaaaggttgaacaccttataagtaagaggacccataaactcattgccttaaggttt 10074427  T
Q  625 tgattaagaatgtggt 640  Q
    ||  ||||| ||||||    
T  10074426 tgggtaagagtgtggt 10074411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 530 - 640
Target Start/End: Original strand, 35210204 - 35210314
Alignment:
Q  530 tgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattttgatt 629  Q
    ||||||| ||| ||||||||||||||||||||| || |||||| ||||||    |||||| ||||||||||||| || |||| |||||||  |||||  |    
T  35210204 tgcaagtgtgagttatatgtctcacatcggataaaatagtaaaggttgaacaccttataagtaagaggacccataaaaccattgccttaaggttttgggt 35210303  T
Q  630 aagaatgtggt 640  Q
    |||| ||||||    
T  35210304 aagagtgtggt 35210314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 655 - 708
Target Start/End: Original strand, 2843683 - 2843736
Alignment:
Q  655 ggttgttctaacctcgatgtggacgatcccccgaactccccttatgatccaaca 708  Q
    |||||||||| |||||||||||||| |||||| ||||||||| |||||||||||    
T  2843683 ggttgttctagcctcgatgtggacggtccccctaactcccctcatgatccaaca 2843736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 652 - 708
Target Start/End: Original strand, 16455032 - 16455088
Alignment:
Q  652 tgcggttgttctaacctcgatgtggacgatcccccgaactccccttatgatccaaca 708  Q
    ||||||||||||| |||||||||||||| |||||||| ||||||| || ||||||||    
T  16455032 tgcggttgttctagcctcgatgtggacggtcccccgagctcccctcataatccaaca 16455088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 525 - 640
Target Start/End: Complemental strand, 2578997 - 2578883
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattt 624  Q
    ||||| |||||| ||| ||||||||| | ||||||||| |||||||||||||||||   ||||||||||||||| |||| ||| |||  ||||||  |||    
T  2578997 ttgtgagcaagtgtgatttatatgtccctcatcggata-aaaagtaaatgttgaataccttataaataagaggatccataaactcattaccttaaggttt 2578899  T
Q  625 tgattaagaatgtggt 640  Q
    ||  ||||| ||||||    
T  2578898 tgggtaagagtgtggt 2578883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 525 - 640
Target Start/End: Original strand, 16107673 - 16107788
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattt 624  Q
    |||||| ||||| ||| |||||||| |||||||||||| ||||||||| ||| ||    |||||| ||||||||| ||| ||||||| |||||||  |||    
T  16107673 ttgtgtacaagtgtgagttatatgtgtcacatcggataaaaaagtaaaggttaaacaccttataagtaagaggactcataaacccattgccttaaggttt 16107772  T
Q  625 tgattaagaatgtggt 640  Q
    ||  ||||| ||||||    
T  16107773 tgggtaagagtgtggt 16107788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 530 - 640
Target Start/End: Original strand, 2378126 - 2378236
Alignment:
Q  530 tgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattttgatt 629  Q
    ||||||| ||| ||||||||| ||||||||||| || |||||| ||||||    |||||| ||||||||||||| |||||||  ||||||  ||||   |    
T  2378126 tgcaagtgtgagttatatgtcccacatcggataaaatagtaaaggttgaacaccttataagtaagaggacccataaacccattaccttaaggttttaggt 2378225  T
Q  630 aagaatgtggt 640  Q
    |||||||||||    
T  2378226 aagaatgtggt 2378236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 530 - 640
Target Start/End: Complemental strand, 14748496 - 14748386
Alignment:
Q  530 tgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattttgatt 629  Q
    ||||||| ||| ||||||||| ||||||||||| || |||||| ||||||    |||||||||||||||||||| ||| ||| || ||||  |||||  |    
T  14748496 tgcaagtgtgagttatatgtcccacatcggataaaatagtaaaggttgaacaccttataaataagaggacccataaactcattgcgttaaggttttgggt 14748397  T
Q  630 aagaatgtggt 640  Q
    |||| ||||||    
T  14748396 aagagtgtggt 14748386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 525 - 619
Target Start/End: Original strand, 16108058 - 16108152
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaa 619  Q
    |||||| ||||| ||| ||||||||  |||||| |||| || |||||||||||||    |||||| ||||||||||||| ||||||| |||||||    
T  16108058 ttgtgtacaagtgtgagttatatgttccacatcagataaaagagtaaatgttgaacaccttataagtaagaggacccataaacccattgccttaa 16108152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 530 - 640
Target Start/End: Original strand, 29518503 - 29518613
Alignment:
Q  530 tgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattttgatt 629  Q
    ||||||| ||| ||||||||| ||||||||||| || |||||| ||||||    |||||| ||||||||||||| |||||||  ||||||  |||||  |    
T  29518503 tgcaagtgtgagttatatgtcccacatcggataaaatagtaaaggttgaacaccttataagtaagaggacccataaacccattaccttaaggttttgggt 29518602  T
Q  630 aagaatgtggt 640  Q
    |||| ||||||    
T  29518603 aagagtgtggt 29518613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 530 - 640
Target Start/End: Original strand, 29518920 - 29519030
Alignment:
Q  530 tgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattttgatt 629  Q
    ||||||| ||| ||||||||| ||||||||||| || |||||| ||||||    |||||| ||||||||||||| |||||||  ||||||  |||||  |    
T  29518920 tgcaagtgtgagttatatgtcccacatcggataaaatagtaaaggttgaacaccttataagtaagaggacccataaacccattaccttaaggttttgggt 29519019  T
Q  630 aagaatgtggt 640  Q
    |||| ||||||    
T  29519020 aagagtgtggt 29519030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 530 - 640
Target Start/End: Original strand, 32741179 - 32741289
Alignment:
Q  530 tgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattttgatt 629  Q
    ||||||| ||| ||||||||| ||||||||||| || |||||| ||||||    |||||| ||||||||||||| |||||||  ||||||  |||||  |    
T  32741179 tgcaagtgtgagttatatgtcccacatcggataaaatagtaaaggttgaacaccttataagtaagaggacccataaacccattaccttaaggttttgggt 32741278  T
Q  630 aagaatgtggt 640  Q
    |||| ||||||    
T  32741279 aagagtgtggt 32741289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 532 - 640
Target Start/End: Original strand, 2377756 - 2377864
Alignment:
Q  532 caagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattttgattaa 631  Q
    ||||| ||| ||||||||| |||||||| || || |||||| ||||||    |||||| ||||||||||||| ||||||| |||||||  |||||  |||    
T  2377756 caagtgtgagttatatgtcccacatcggttaaaagagtaaaggttgaacaccttataagtaagaggacccataaacccattgccttaaggttttgggtaa 2377855  T
Q  632 gaatgtggt 640  Q
    || ||||||    
T  2377856 gagtgtggt 2377864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 525 - 708
Target Start/End: Complemental strand, 2578605 - 2578420
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattt 624  Q
    |||||| ||||| ||| ||||||||| |||| |||||| || |||||| ||||||    |||||| ||||||||||||| ||||||| |||||||  |||    
T  2578605 ttgtgtacaagtgtgagttatatgtcccaca-cggataaaagagtaaaggttgaacactttataagtaagaggacccataaacccatagccttaaggttt 2578507  T
Q  625 tgattaagaatgtggt---tgaatatattatgcggttgttctaacctcgatgtggacgatcccccgaactccccttatgatccaaca 708  Q
    ||  ||||| ||||||   |   |   || ||||||||||||| |||||||||||||| |||||| | | ||||| |||| ||||||    
T  2578506 tgggtaagagtgtggtgtctcttttgcttgtgcggttgttctagcctcgatgtggacggtccccctagcccccctcatgacccaaca 2578420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 652 - 696
Target Start/End: Original strand, 16454700 - 16454744
Alignment:
Q  652 tgcggttgttctaacctcgatgtggacgatcccccgaactcccct 696  Q
    ||||||||||||| |||||||||||||| |||||||| |||||||    
T  16454700 tgcggttgttctagcctcgatgtggacggtcccccgagctcccct 16454744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 530 - 688
Target Start/End: Original strand, 1846748 - 1846909
Alignment:
Q  530 tgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattttgatt 629  Q
    ||||||| ||| || |||||||||||||||||| || |||||| ||||||    |||||| |||||| |||||| || |||| |||||||  |||||  |    
T  1846748 tgcaagtgtgaattctatgtctcacatcggataaaatagtaaaggttgaacaccttataagtaagagcacccataaatccattgccttaaggttttggat 1846847  T
Q  630 aagaatgtggt---tgaatatattatgcggttgttctaacctcgatgtggacgatcccccga 688  Q
    |||| ||||||   |   |   || ||||||||||||| |||||||||||||| ||||||||    
T  1846848 aagagtgtggtgtctcttttgcttgtgcggttgttctagcctcgatgtggacggtcccccga 1846909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 530 - 617
Target Start/End: Original strand, 3409660 - 3409747
Alignment:
Q  530 tgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgcctt 617  Q
    ||||||| ||| ||||||||  |||||| |||| || |||||| ||||||  | |||||| ||||||||||||| ||||||| |||||    
T  3409660 tgcaagtgtgagttatatgtaccacatcagataaaatagtaaaagttgaacatcttataagtaagaggacccataaacccattgcctt 3409747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 530 - 640
Target Start/End: Original strand, 3409259 - 3409369
Alignment:
Q  530 tgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattttgatt 629  Q
    ||||||| ||| ||||||||| |||||| |||| || |||||| ||||||    |||||| ||||||||||||| ||| ||| |||||||  |||||  |    
T  3409259 tgcaagtgtgagttatatgtcccacatcagataaaatagtaaaggttgaacaccttataagtaagaggacccataaactcattgccttaaggttttgggt 3409358  T
Q  630 aagaatgtggt 640  Q
    |||| ||||||    
T  3409359 aagagtgtggt 3409369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 525 - 639
Target Start/End: Original strand, 16454570 - 16454684
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattt 624  Q
    |||||| ||||| ||| |||| |||| |||||| |||| || | |||| ||||||    |||||| ||||||||||||| ||||||| ||||||| ||||    
T  16454570 ttgtgtacaagtgtgagttatgtgtcccacatcagataaaagaataaaagttgaacaccttataagtaagaggacccataaacccattgccttaagattt 16454669  T
Q  625 tgattaagaatgtgg 639  Q
    ||  ||||| |||||    
T  16454670 tggataagagtgtgg 16454684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 542 - 576
Target Start/End: Complemental strand, 17135215 - 17135181
Alignment:
Q  542 ttatatgtctcacatcggatagaaaagtaaatgtt 576  Q
    ||||||||||||||||||||||| |||||||||||    
T  17135215 ttatatgtctcacatcggatagagaagtaaatgtt 17135181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 5e-18; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 525 - 640
Target Start/End: Original strand, 41632777 - 41632892
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattt 624  Q
    |||||||||||| | | ||||||||||||||||||||||||||||||| ||||||    |||||| ||||||||||||| ||||||  || |||| ||||    
T  41632777 ttgtgtgcaagtgtaagttatatgtctcacatcggatagaaaagtaaaggttgaacaccttataagtaagaggacccataaacccaatgctttaagattt 41632876  T
Q  625 tgattaagaatgtggt 640  Q
    ||  ||||| ||||||    
T  41632877 tgggtaagagtgtggt 41632892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 542 - 640
Target Start/End: Complemental strand, 9498800 - 9498702
Alignment:
Q  542 ttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattttgattaagaatgtggt 640  Q
    |||||||||||||||| ||||||| |||||| ||||||    |||||| ||||||||||||| ||||||| ||||||| ||||||  ||||| ||||||    
T  9498800 ttatatgtctcacatcagatagaatagtaaaggttgaacaccttataagtaagaggacccataaacccattgccttaagattttgggtaagagtgtggt 9498702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 525 - 619
Target Start/End: Complemental strand, 26075325 - 26075231
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaa 619  Q
    |||||| ||||| ||| ||||||||||||||||||||| || |||||| ||||||    |||||| ||||||||||||| ||||||| |||||||    
T  26075325 ttgtgtacaagtgtgatttatatgtctcacatcggataaaagagtaaaggttgaacaccttataagtaagaggacccataaacccattgccttaa 26075231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 525 - 640
Target Start/End: Complemental strand, 26074309 - 26074194
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattt 624  Q
    |||||||||||| ||| ||||||||| ||||||||||| ||||||||| ||||||    | |||  ||||||||||||| ||||||| |||||||  |||    
T  26074309 ttgtgtgcaagtgtgagttatatgtcacacatcggataaaaaagtaaaggttgaacacctcatatgtaagaggacccatgaacccattgccttaaggttt 26074210  T
Q  625 tgattaagaatgtggt 640  Q
    ||  ||||| ||||||    
T  26074209 tgggtaagagtgtggt 26074194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 525 - 600
Target Start/End: Original strand, 39309679 - 39309754
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacc 600  Q
    |||||| ||||||||| ||||||||| ||||||||||| ||  ||||||||||||   ||||||||||||||||||    
T  39309679 ttgtgtacaagtatgagttatatgtcccacatcggataaaagggtaaatgttgaacacattataaataagaggacc 39309754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 525 - 579
Target Start/End: Complemental strand, 36568730 - 36568676
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaa 579  Q
    |||||||||||| ||| ||||||||| ||||||||||||||||||||| ||||||    
T  36568730 ttgtgtgcaagtgtgagttatatgtcccacatcggatagaaaagtaaaagttgaa 36568676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 542 - 640
Target Start/End: Original strand, 41170646 - 41170744
Alignment:
Q  542 ttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattttgattaagaatgtggt 640  Q
    ||||||||| ||||||||||| || |||||| ||||||  | |||||| ||||||||||||| ||||||| |||||||  |||||  ||||| ||||||    
T  41170646 ttatatgtcccacatcggataaaatagtaaaggttgaacatcttataagtaagaggacccataaacccattgccttaaggttttgggtaagagtgtggt 41170744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 525 - 569
Target Start/End: Original strand, 31509618 - 31509662
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagt 569  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||    
T  31509618 ttgtgtgcaagtgtgagttatatgtctcacatcggatagaaaagt 31509662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 525 - 608
Target Start/End: Complemental strand, 1028680 - 1028597
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacc 608  Q
    |||||| ||||| ||| ||||||||| ||||||||||||||||||||| | ||||    |||||| ||||||||||||| ||||    
T  1028680 ttgtgtacaagtgtgagttatatgtcccacatcggatagaaaagtaaaggatgaacactttataagtaagaggacccataaacc 1028597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 525 - 640
Target Start/End: Original strand, 15370094 - 15370209
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattt 624  Q
    |||||||||||| ||| ||||||||| ||||||| ||| || |||||| ||||||  | |||||| ||||||||||||| || |||  |||||||  |||    
T  15370094 ttgtgtgcaagtgtgagttatatgtcccacatcgaataaaatagtaaaggttgaacatcttataagtaagaggacccataaatccacagccttaaggttt 15370193  T
Q  625 tgattaagaatgtggt 640  Q
    ||  ||||| ||||||    
T  15370194 tgggtaagagtgtggt 15370209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 526 - 617
Target Start/End: Complemental strand, 40296477 - 40296386
Alignment:
Q  526 tgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgcctt 617  Q
    ||||||||||| ||| ||||||||| ||||||||||| || || ||| ||||||    |||||| ||||||||||||| ||||||| |||||    
T  40296477 tgtgtgcaagtgtgagttatatgtcccacatcggataaaatagaaaaggttgaacaccttataagtaagaggacccataaacccattgcctt 40296386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 532 - 599
Target Start/End: Original strand, 42524719 - 42524785
Alignment:
Q  532 caagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggac 599  Q
    ||||| ||| ||||||||||||||||||||||||||||||| ||||||  | |||| |||||||||||    
T  42524719 caagtgtgaattatatgtctcacatcggatagaaaagtaaa-gttgaacatcttatgaataagaggac 42524785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 525 - 619
Target Start/End: Original strand, 6224191 - 6224285
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaa 619  Q
    |||||| ||||| ||| ||||||||| ||| ||||||| || |||||| ||||||    |||||| ||||||||||||| ||| |||||||||||    
T  6224191 ttgtgtacaagtgtgagttatatgtcccacttcggataaaagagtaaaggttgaacaccttataagtaagaggacccataaactcatcgccttaa 6224285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 525 - 619
Target Start/End: Original strand, 42508607 - 42508701
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaa 619  Q
    |||||| ||||| ||| |||||| || ||||||||||||||||||||| ||| ||  | | |||| ||||||||| ||| ||||||| |||||||    
T  42508607 ttgtgtacaagtgtgaattatatatcccacatcggatagaaaagtaaaggttaaacatctaataagtaagaggactcataaacccattgccttaa 42508701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 655 - 707
Target Start/End: Complemental strand, 3295375 - 3295323
Alignment:
Q  655 ggttgttctaacctcgatgtggacgatcccccgaactccccttatgatccaac 707  Q
    |||||||||| |||||||||||||| ||||||  |||||||| ||||||||||    
T  3295375 ggttgttctagcctcgatgtggacggtccccctcactcccctcatgatccaac 3295323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 533 - 625
Target Start/End: Complemental strand, 41635346 - 41635254
Alignment:
Q  533 aagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaatttt 625  Q
    |||||||| |||||||| || |||| |||| || |||||||||||||    ||||||||||||||| |||| || |||| | |||||||||||    
T  41635346 aagtatgagttatatgtttcccatcagataaaagagtaaatgttgaacaccttataaataagaggatccataaatccattgtcttaaaatttt 41635254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 525 - 640
Target Start/End: Complemental strand, 12662815 - 12662700
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattt 624  Q
    |||||||||||| ||| ||||||||| ||||||||||| || |||||| ||||||  | |||||| |||||  |||||| || |||| | |||||  |||    
T  12662815 ttgtgtgcaagtgtgagttatatgtcccacatcggataaaatagtaaaggttgaacattttataagtaagaaaacccataaatccattgtcttaagtttt 12662716  T
Q  625 tgattaagaatgtggt 640  Q
    ||  ||||| ||||||    
T  12662715 tgggtaagagtgtggt 12662700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 525 - 608
Target Start/End: Complemental strand, 13415923 - 13415840
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacc 608  Q
    |||||||||||| ||| ||||||||| ||||||||||| |  |||||| ||||||    |||||| ||||||||||||| ||||    
T  13415923 ttgtgtgcaagtgtgagttatatgtcccacatcggataaattagtaaaggttgaacaccttataagtaagaggacccataaacc 13415840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 532 - 619
Target Start/End: Complemental strand, 18603276 - 18603189
Alignment:
Q  532 caagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaa 619  Q
    ||||| ||| ||||||||| |||||| |||| || |||||| ||||||    |||||| ||||||||||||| ||||||| |||||||    
T  18603276 caagtgtgagttatatgtcccacatcagataaaatagtaaaggttgaacaccttataagtaagaggacccataaacccattgccttaa 18603189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 525 - 640
Target Start/End: Original strand, 26074607 - 26074722
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattt 624  Q
    |||||| ||||| ||| ||||||||  || |||||||| || |||||| ||||||    |||||| ||||||||||||| ||||||| |||||||  |||    
T  26074607 ttgtgtacaagtgtgagttatatgttccatatcggataaaagagtaaaggttgaacaccttataagtaagaggacccataaacccattgccttaaggttt 26074706  T
Q  625 tgattaagaatgtggt 640  Q
    ||  ||||| ||||||    
T  26074707 tgggtaagagtgtggt 26074722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 541 - 640
Target Start/End: Original strand, 33747782 - 33747881
Alignment:
Q  541 cttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattttgattaagaatgtggt 640  Q
    |||||||||| ||||||||||| || |||||| ||| |||   |||||| |||||||| |||| ||| ||| ||||||| ||||||  ||||| ||||||    
T  33747782 cttatatgtcccacatcggataaaatagtaaaggttaaatactttataagtaagaggatccataaactcattgccttaagattttggataagagtgtggt 33747881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 533 - 640
Target Start/End: Original strand, 35914852 - 35914959
Alignment:
Q  533 aagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattttgattaag 632  Q
    |||||||| ||||||||| ||||||||||| || |||||| ||||||  | |||||| ||||| ||||| | || |||| ||| |||| | |||  ||||    
T  35914852 aagtatgagttatatgtcacacatcggataaaagagtaaaggttgaacattttataagtaagaagacccgtaaatccattgccctaaattattggataag 35914951  T
Q  633 aatgtggt 640  Q
    ||||||||    
T  35914952 aatgtggt 35914959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 652 - 695
Target Start/End: Complemental strand, 42405631 - 42405588
Alignment:
Q  652 tgcggttgttctaacctcgatgtggacgatcccccgaactcccc 695  Q
    ||||||||||||| |||||||||||||| |||||||| ||||||    
T  42405631 tgcggttgttctagcctcgatgtggacggtcccccgagctcccc 42405588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 525 - 619
Target Start/End: Original strand, 299484 - 299578
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaa 619  Q
    ||||| |||||| ||| ||||||||| ||||||||||| || |||||| ||||||    |||||| ||||| ||||||| ||| ||| |||||||    
T  299484 ttgtgcgcaagtgtgagttatatgtcccacatcggataaaacagtaaaggttgaacaccttataagtaagatgacccataaactcatagccttaa 299578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 530 - 579
Target Start/End: Original strand, 623818 - 623867
Alignment:
Q  530 tgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaa 579  Q
    ||||||| ||| ||||||||||||||||||||| || |||||| ||||||    
T  623818 tgcaagtgtgagttatatgtctcacatcggatataatagtaaaggttgaa 623867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 655 - 708
Target Start/End: Complemental strand, 27502066 - 27502013
Alignment:
Q  655 ggttgttctaacctcgatgtggacgatcccccgaactccccttatgatccaaca 708  Q
    |||||||||| |||||||||||||| |||||| | ||||||| |||| ||||||    
T  27502066 ggttgttctatcctcgatgtggacggtccccctagctcccctcatgacccaaca 27502013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 542 - 619
Target Start/End: Complemental strand, 34753171 - 34753094
Alignment:
Q  542 ttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaa 619  Q
    ||||||||| ||||| ||||||||||||||| ||||||    |||||| ||||| ||||||| |||| || |||||||    
T  34753171 ttatatgtcccacattggatagaaaagtaaaagttgaacaccttataagtaagaagacccataaaccgattgccttaa 34753094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 525 - 603
Target Start/End: Complemental strand, 22077658 - 22077580
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccat 603  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||    |||||| |||||||||||||    
T  22077658 ttgtgtgcaagtgtgagttatatgtctcacatcggatagaaaagtaaaggttgaacaccttataagtaagaggacccat 22077580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 525 - 619
Target Start/End: Complemental strand, 41184588 - 41184494
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaa 619  Q
    |||||||||||| ||| ||||||||||||||||||||| || |||||| ||||||    |||||| ||||||||||||| ||||||| |||||||    
T  41184588 ttgtgtgcaagtgtgagttatatgtctcacatcggataaaatagtaaaggttgaacactttataagtaagaggacccataaacccattgccttaa 41184494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 525 - 611
Target Start/End: Complemental strand, 21378204 - 21378118
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccat 611  Q
    |||||||||||| | | ||||||||| || ||||||||||| |||||| ||||||| | |||||| ||||||||||||| |||||||    
T  21378204 ttgtgtgcaagtgtcagttatatgtcccagatcggatagaacagtaaaggttgaatatcttataagtaagaggacccataaacccat 21378118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 530 - 619
Target Start/End: Complemental strand, 44290616 - 44290527
Alignment:
Q  530 tgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaa 619  Q
    ||||||| ||| ||||||||| ||||||||||| || |||||| ||||||  | |||||| ||||||||||||| ||||||| |||||||    
T  44290616 tgcaagtgtgagttatatgtcccacatcggataaaatagtaaaggttgaacatcttataagtaagaggacccataaacccattgccttaa 44290527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 525 - 640
Target Start/End: Original strand, 17294572 - 17294687
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattt 624  Q
    |||||| ||||| ||| ||||||||| ||||||||||| || |||||| ||||||    |||||| ||||||||||||| ||||||| |||||||  |||    
T  17294572 ttgtgtacaagtgtgagttatatgtcccacatcggataaaagagtaaaggttgaacactttataagtaagaggacccataaacccattgccttaaggttt 17294671  T
Q  625 tgattaagaatgtggt 640  Q
    ||  ||||| ||||||    
T  17294672 tgggtaagagtgtggt 17294687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 525 - 596
Target Start/End: Complemental strand, 24600477 - 24600406
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagag 596  Q
    |||||||||||| ||| ||||||||| || |||||||||||||||||| ||||||  |||||||| ||||||    
T  24600477 ttgtgtgcaagtgtgagttatatgtcccatatcggatagaaaagtaaaggttgaacatattataagtaagag 24600406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 525 - 640
Target Start/End: Original strand, 34364920 - 34365035
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattt 624  Q
    |||||||||||| ||| ||||||||| ||||||||||| || | |||| ||||||    |||||| ||||||||||||| ||||||| |||||||  |||    
T  34364920 ttgtgtgcaagtgtgagttatatgtcacacatcggataaaataataaaggttgaacaccttataagtaagaggacccataaacccatagccttaaggttt 34365019  T
Q  625 tgattaagaatgtggt 640  Q
    ||  ||||| ||||||    
T  34365020 tgggtaagagtgtggt 34365035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 525 - 640
Target Start/End: Original strand, 41157370 - 41157485
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattt 624  Q
    |||||||||||| ||| ||||||||| |||||| |||| || |||||| ||||||    |||||| ||||||||||||| ||||||| ||||| |  |||    
T  41157370 ttgtgtgcaagtgtgagttatatgtcccacatcagataaaagagtaaaagttgaacaccttataagtaagaggacccataaacccattgcctttaggttt 41157469  T
Q  625 tgattaagaatgtggt 640  Q
    ||| ||||| ||||||    
T  41157470 tgagtaagagtgtggt 41157485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 525 - 619
Target Start/End: Original strand, 34364502 - 34364596
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaa 619  Q
    |||||||||||| ||| ||||||||||||||||||||| || |||||| ||||||    |||||| |||||||| || | ||||||| |||||||    
T  34364502 ttgtgtgcaagtgtgagttatatgtctcacatcggataaaatagtaaaggttgaacaccttataagtaagaggatccgtaaacccatagccttaa 34364596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 523 - 616
Target Start/End: Complemental strand, 22077993 - 22077900
Alignment:
Q  523 tattgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgcct 616  Q
    |||||||||||||| ||| |||||||| | | ||||||||||||| |||| ||||||  | |||||| ||||||||||||| ||| ||| ||||    
T  22077993 tattgtgtgcaagtgtgagttatatgttttaaatcggatagaaaaataaaggttgaacatcttataagtaagaggacccataaactcatagcct 22077900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 530 - 619
Target Start/End: Complemental strand, 44290983 - 44290894
Alignment:
Q  530 tgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaa 619  Q
    ||||||| ||| ||||||||| ||||||||||| || |||||| ||||||    |||||| ||||||||||||| ||||||| |||||||    
T  44290983 tgcaagtgtgagttatatgtcccacatcggataaaatagtaaaggttgaacaccttataagtaagaggacccataaacccattgccttaa 44290894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 528 - 619
Target Start/End: Original strand, 41142370 - 41142461
Alignment:
Q  528 tgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaa 619  Q
    ||||||||| ||| ||||||||| ||||||||||| || |||||| ||||||    |||||| ||| ||||||||| ||||||| |||||||    
T  41142370 tgtgcaagtgtgagttatatgtcccacatcggataaaacagtaaaggttgaacaccttataagtaaaaggacccataaacccattgccttaa 41142461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 525 - 619
Target Start/End: Complemental strand, 5320128 - 5320034
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaa 619  Q
    |||| ||||||| ||| ||||||||  ||||||||||||||||||||| ||||||    |||||| | ||||||||||| ||| ||| |||||||    
T  5320128 ttgtatgcaagtgtgagttatatgttccacatcggatagaaaagtaaaagttgaacaccttataagtgagaggacccataaactcatagccttaa 5320034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 542 - 599
Target Start/End: Complemental strand, 5528900 - 5528843
Alignment:
Q  542 ttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggac 599  Q
    ||||||||||||||||||||| || |||||| ||||||  | ||||||||||||||||    
T  5528900 ttatatgtctcacatcggataaaagagtaaaggttgaacatcttataaataagaggac 5528843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 652 - 697
Target Start/End: Original strand, 11977405 - 11977450
Alignment:
Q  652 tgcggttgttctaacctcgatgtggacgatcccccgaactcccctt 697  Q
    ||||||||||||| |||||||||||||| ||||||||||| |||||    
T  11977405 tgcggttgttctagcctcgatgtggacggtcccccgaacttccctt 11977450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 649 - 697
Target Start/End: Complemental strand, 5528790 - 5528742
Alignment:
Q  649 ttatgcggttgttctaacctcgatgtggacgatcccccgaactcccctt 697  Q
    |||||||||||||||| |||||||||||| || |||||| |||||||||    
T  5528790 ttatgcggttgttctatcctcgatgtggatgaccccccggactcccctt 5528742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 525 - 640
Target Start/End: Original strand, 37556106 - 37556221
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaa-agtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaatt 623  Q
    |||||| ||||| ||| ||||||||| ||||||||||| ||| |||||| ||||||  | |||||| |||||||| |||| ||||||| |||||||  ||    
T  37556106 ttgtgtacaagtgtgagttatatgtcccacatcggataaaaatagtaaaggttgaacatcttataagtaagagga-ccataaacccatagccttaaggtt 37556204  T
Q  624 ttgattaagaatgtggt 640  Q
    |||  ||||| ||||||    
T  37556205 ttgggtaagagtgtggt 37556221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 530 - 609
Target Start/End: Complemental strand, 3537305 - 3537226
Alignment:
Q  530 tgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaaccc 609  Q
    ||||||| ||| ||||||||| ||||||||||| || |||||| ||||||    |||||| ||||||||||||| |||||    
T  3537305 tgcaagtgtgagttatatgtcccacatcggataaaatagtaaaggttgaacaccttataagtaagaggacccataaaccc 3537226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 652 - 695
Target Start/End: Complemental strand, 44290857 - 44290814
Alignment:
Q  652 tgcggttgttctaacctcgatgtggacgatcccccgaactcccc 695  Q
    ||||||||||||| |||||||||||||| |||||||| ||||||    
T  44290857 tgcggttgttctagcctcgatgtggacggtcccccgagctcccc 44290814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 525 - 572
Target Start/End: Original strand, 44685451 - 44685498
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaa 572  Q
    |||||||||||| ||| ||||||||| || ||||||||||||||||||    
T  44685451 ttgtgtgcaagtgtgagttatatgtcccatatcggatagaaaagtaaa 44685498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 525 - 580
Target Start/End: Original strand, 45839622 - 45839676
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaat 580  Q
    |||||| ||||||||| ||||||||| |||||||||||||||| |||| |||||||    
T  45839622 ttgtgtacaagtatgagttatatgtcccacatcggatagaaaa-taaaggttgaat 45839676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 533 - 608
Target Start/End: Complemental strand, 50052178 - 50052103
Alignment:
Q  533 aagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacc 608  Q
    |||| ||| ||||||||| ||||||||||| || |||||| ||||||  | |||||| ||||||||||||| ||||    
T  50052178 aagtgtgagttatatgtcccacatcggataaaatagtaaaggttgaacatcttataagtaagaggacccataaacc 50052103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 525 - 579
Target Start/End: Complemental strand, 66635 - 66581
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaa 579  Q
    |||||||||||| ||| ||||||||  || |||||||||||||||||| ||||||    
T  66635 ttgtgtgcaagtgtgagttatatgttccatatcggatagaaaagtaaaggttgaa 66581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 525 - 619
Target Start/End: Complemental strand, 3875494 - 3875400
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaa 619  Q
    |||||||||||  | | ||||||||| ||||||||||| ||||||||| |||| |    |||||| ||||||||| ||| ||||||| |||||||    
T  3875494 ttgtgtgcaagagtcagttatatgtcacacatcggataaaaaagtaaaggttgtacaccttataagtaagaggactcataaacccattgccttaa 3875400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 525 - 567
Target Start/End: Complemental strand, 22077285 - 22077243
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaa 567  Q
    |||||||||||| ||| ||||||||| ||||||||||||||||    
T  22077285 ttgtgtgcaagtgtgagttatatgtcccacatcggatagaaaa 22077243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 525 - 619
Target Start/End: Complemental strand, 24132148 - 24132054
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaa 619  Q
    |||| ||||| | ||| ||||||||| | ||||||||||||||||||| ||||||    ||||||||||| ||| |||| ||| ||| |||||||    
T  24132148 ttgtatgcaactgtgagttatatgtccctcatcggatagaaaagtaaaggttgaacaccttataaataaggggatccataaactcattgccttaa 24132054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 525 - 579
Target Start/End: Complemental strand, 39066363 - 39066309
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaa 579  Q
    |||||||||||| ||| |||||| |  ||||||||||||||||||||| ||||||    
T  39066363 ttgtgtgcaagtgtgagttatatattccacatcggatagaaaagtaaaggttgaa 39066309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 524 - 569
Target Start/End: Complemental strand, 1187528 - 1187483
Alignment:
Q  524 attgtgtgcaagtatgacttatatgtctcacatcggatagaaaagt 569  Q
    ||||||||||||| ||| ||||||||||||||||| ||| ||||||    
T  1187528 attgtgtgcaagtgtgaattatatgtctcacatcgaatataaaagt 1187483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 654 - 695
Target Start/End: Complemental strand, 44290489 - 44290448
Alignment:
Q  654 cggttgttctaacctcgatgtggacgatcccccgaactcccc 695  Q
    ||||||||||| |||||||||||||| |||||||| ||||||    
T  44290489 cggttgttctagcctcgatgtggacggtcccccgagctcccc 44290448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 526 - 603
Target Start/End: Original strand, 45084378 - 45084455
Alignment:
Q  526 tgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccat 603  Q
    ||||||||||| ||| |||||| || ||||||||||| || |||||| ||||||    |||||| |||||||||||||    
T  45084378 tgtgtgcaagtgtgagttatatctcccacatcggataaaacagtaaaggttgaacaccttataagtaagaggacccat 45084455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 525 - 640
Target Start/End: Original strand, 30359266 - 30359381
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattt 624  Q
    |||||| ||||| ||| ||||||||||||||||||||| || |||||||||||||    ||||||  |||||||||||| ||||||| |||||||  |||    
T  30359266 ttgtgtacaagtgtgagttatatgtctcacatcggataaaagagtaaatgttgaacaccttataagcaagaggacccataaacccatagccttaaggttt 30359365  T
Q  625 tgattaagaatgtggt 640  Q
    ||  ||||| ||||||    
T  30359366 tgggtaagagtgtggt 30359381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 523 - 610
Target Start/End: Original strand, 40518575 - 40518662
Alignment:
Q  523 tattgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaaccca 610  Q
    |||||||| ||||| ||| ||||||||| |||||| |||||||||||||| ||||||    |||||||||||||||||||| ||||||    
T  40518575 tattgtgttcaagtgtgagttatatgtcccacatcagatagaaaagtaaaggttgaacaccttataaataagaggacccataaaccca 40518662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 525 - 619
Target Start/End: Original strand, 9608740 - 9608834
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaa 619  Q
    |||||||||||| ||| ||||||||| || |||||||||||||||||| ||||||    |||||| ||||| ||||||| |||||||| ||||||    
T  9608740 ttgtgtgcaagtgtgagttatatgtcccatatcggatagaaaagtaaaggttgaacaccttataagtaagatgacccataaacccatcaccttaa 9608834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 525 - 626
Target Start/End: Original strand, 41972153 - 41972254
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattt 624  Q
    |||||||||||| ||| ||||||||| ||||||||||||||||||||| ||||||    |||||| | | ||||||||| ||||||| ||| |||| |||    
T  41972153 ttgtgtgcaagtgtgagttatatgtcccacatcggatagaaaagtaaaggttgaacaccttataagtgataggacccataaacccattgccataaagttt 41972252  T
Q  625 tg 626  Q
    ||    
T  41972253 tg 41972254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 525 - 640
Target Start/End: Complemental strand, 33113530 - 33113415
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattt 624  Q
    |||||| ||||| ||| |||||||||  |||||||||| || |||||| ||||||  | |||||| ||||||||||||| ||| ||| ||||||| ||||    
T  33113530 ttgtgtacaagtttgagttatatgtcctacatcggataaaatagtaaaggttgaacgtcttataagtaagaggacccataaactcattgccttaagattt 33113431  T
Q  625 tgattaagaatgtggt 640  Q
    ||  ||||| ||||||    
T  33113430 tgggtaagagtgtggt 33113415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 533 - 640
Target Start/End: Complemental strand, 43274934 - 43274827
Alignment:
Q  533 aagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattttgattaag 632  Q
    |||| ||| |||||||| ||||||| |||| || |||||| ||||||| |||||||| ||||||||||||| |||| || | |||||  |||||| ||||    
T  43274934 aagtgtgagttatatgtttcacatcagataaaagagtaaaggttgaatatattataagtaagaggacccataaacctattgtcttaaggttttgagtaag 43274835  T
Q  633 aatgtggt 640  Q
    | ||||||    
T  43274834 agtgtggt 43274827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 533 - 639
Target Start/End: Original strand, 147454 - 147560
Alignment:
Q  533 aagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattttgattaag 632  Q
    |||| ||| ||||||||| ||||||||||| || |||||| ||||||    |||||||||||||||||||| |||| || |||||||| |||||  ||||    
T  147454 aagtgtgagttatatgtcccacatcggataaaagagtaaaggttgaacaccttataaataagaggacccataaacctattgccttaaagttttgggtaag 147553  T
Q  633 aatgtgg 639  Q
    | |||||    
T  147554 agtgtgg 147560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 525 - 619
Target Start/End: Original strand, 5420646 - 5420740
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaa 619  Q
    |||| ||||||| ||  ||||||||| |||||||||||||| |||||| ||||||  | |||||| ||||||||| ||| ||||||| |||||||    
T  5420646 ttgtatgcaagtgtgtattatatgtcccacatcggatagaatagtaaaggttgaacatcttataagtaagaggactcataaacccattgccttaa 5420740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 525 - 619
Target Start/End: Original strand, 9309350 - 9309444
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaa 619  Q
    |||||||||||| ||| ||||||||| ||||||||||| || |||||||||||||    |||||| ||||||||||| | ||| ||| |||||||    
T  9309350 ttgtgtgcaagtgtgagttatatgtcccacatcggataaaagagtaaatgttgaacaccttataagtaagaggacccttaaactcattgccttaa 9309444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 542 - 619
Target Start/End: Complemental strand, 70420 - 70343
Alignment:
Q  542 ttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaa 619  Q
    ||||||||| ||||||||||| || |||||||||||||  | |||||| ||||||||||||| ||||||  |||||||    
T  70420 ttatatgtcccacatcggataaaagagtaaatgttgaacatcttataagtaagaggacccataaacccactgccttaa 70343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 525 - 608
Target Start/End: Original strand, 8794106 - 8794189
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacc 608  Q
    |||||| ||||| ||| ||||||||||||||||||||| || | |||||||||||  | |||||| ||||||||| ||| ||||    
T  8794106 ttgtgtacaagtgtgagttatatgtctcacatcggataaaagaataaatgttgaacatcttataagtaagaggactcataaacc 8794189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 525 - 640
Target Start/End: Original strand, 30359604 - 30359719
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattt 624  Q
    |||||| ||||| ||| |||||||||||||||| |||| || |||||| ||||||    |||||| ||||||||| ||| |||||||  |||||| ||||    
T  30359604 ttgtgtacaagtgtgagttatatgtctcacatcagataaaagagtaaaagttgaacaccttataagtaagaggactcataaacccataaccttaagattt 30359703  T
Q  625 tgattaagaatgtggt 640  Q
    ||  ||||| ||||||    
T  30359704 tgggtaagagtgtggt 30359719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 542 - 692
Target Start/End: Complemental strand, 43398217 - 43398062
Alignment:
Q  542 ttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataa---gaggacccatcaacccatcgccttaaaattttgattaagaatgtg 638  Q
    |||||| ||||| |||||||||||||||||| ||||||    ||||||||||   |||||||||| ||  ||| |||||||| |||||  ||||||||||    
T  43398217 ttatatatctcatatcggatagaaaagtaaaggttgaacaccttataaataagaggaggacccataaattcattgccttaaagttttggataagaatgtg 43398118  T
Q  639 --gttgaatatatta-tgcggttgttctaacctcgatgtggacgatcccccgaactc 692  Q
      |||   | || || |||||||| |||||||||||||||| |||||||||||||||    
T  43398117 gcgtttcttttactagtgcggttgctctaacctcgatgtgg-cgatcccccgaactc 43398062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 524 - 579
Target Start/End: Complemental strand, 45122221 - 45122166
Alignment:
Q  524 attgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaa 579  Q
    ||||||||||||| ||| ||||||||||||||||||||| || |||||| ||||||    
T  45122221 attgtgtgcaagtgtgagttatatgtctcacatcggataaaatagtaaaggttgaa 45122166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 525 - 579
Target Start/End: Original strand, 147824 - 147878
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaa 579  Q
    |||||||||||| ||| ||||||||| |||||| |||| ||||||||||||||||    
T  147824 ttgtgtgcaagtgtgagttatatgtcccacatctgataaaaaagtaaatgttgaa 147878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 525 - 619
Target Start/End: Complemental strand, 3038453 - 3038359
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaa 619  Q
    |||||| ||||| ||| ||||||||| ||||||||||| || |||||| ||||||    |||||| ||| ||||||||| ||||||| |||||||    
T  3038453 ttgtgtacaagtgtgagttatatgtcccacatcggataaaatagtaaaggttgaacactttataagtaaaaggacccataaacccattgccttaa 3038359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 553 - 619
Target Start/End: Original strand, 9609108 - 9609174
Alignment:
Q  553 acatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaa 619  Q
    ||||| |||||||||||||| ||||||  | |||||| ||||| ||||||| |||||||||||||||    
T  9609108 acatcagatagaaaagtaaaggttgaacatcttataagtaagatgacccataaacccatcgccttaa 9609174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 652 - 708
Target Start/End: Original strand, 5915992 - 5916047
Alignment:
Q  652 tgcggttgttctaacctcgatgtggacgatcccccgaactccccttatgatccaaca 708  Q
    ||||||||||||| |||||||||||||| | |||||||||||||  |||||||||||    
T  5915992 tgcggttgttctagcctcgatgtggacggt-ccccgaactcccccaatgatccaaca 5916047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 649 - 685
Target Start/End: Original strand, 6732017 - 6732053
Alignment:
Q  649 ttatgcggttgttctaacctcgatgtggacgatcccc 685  Q
    ||||||||||||||||||||||||||||| |||||||    
T  6732017 ttatgcggttgttctaacctcgatgtggatgatcccc 6732053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 525 - 625
Target Start/End: Complemental strand, 9620839 - 9620739
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattt 624  Q
    |||||||||||| ||| |||||||||||||| | |||||||||||| | |||||     |||||| | ||||||||||| ||| ||| ||||||| ||||    
T  9620839 ttgtgtgcaagtgtgagttatatgtctcacaacagatagaaaagtagaagttgatcactttataagtgagaggacccataaactcattgccttaagattt 9620740  T
Q  625 t 625  Q
    |    
T  9620739 t 9620739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 524 - 611
Target Start/End: Complemental strand, 1514079 - 1513992
Alignment:
Q  524 attgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccat 611  Q
    ||||||| ||||||||| |||||| || ||||||||||| || |||||| ||||||    |||||| ||||||||||| | |||||||    
T  1514079 attgtgtacaagtatgagttatatatcccacatcggataaaagagtaaaggttgaacaccttataagtaagaggacccttaaacccat 1513992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 525 - 603
Target Start/End: Complemental strand, 6877026 - 6876947
Alignment:
Q  525 ttgtgtgcaagtatgacttatat-gtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccat 603  Q
    |||||||||||| ||| |||||| ||| ||||||||||| ||||||||| ||||||    |||||||||||| |||||||    
T  6877026 ttgtgtgcaagtgtgagttatatagtcccacatcggataaaaaagtaaaggttgaacaccttataaataagatgacccat 6876947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 525 - 616
Target Start/End: Original strand, 9308972 - 9309065
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtct--cacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgcct 616  Q
    |||||||||||| ||| |||||||||   |||||| |||| || |||||| ||||||  | |||||| ||||||||||||| ||||||| ||||    
T  9308972 ttgtgtgcaagtgtgagttatatgtcctacacatcagataaaagagtaaaagttgaacatgttataagtaagaggacccataaacccattgcct 9309065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 525 - 563
Target Start/End: Complemental strand, 18645750 - 18645712
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatag 563  Q
    |||||||||||| ||| ||||||||||||||||||||||    
T  18645750 ttgtgtgcaagtgtgagttatatgtctcacatcggatag 18645712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 542 - 640
Target Start/End: Original strand, 34835221 - 34835319
Alignment:
Q  542 ttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattttgattaagaatgtggt 640  Q
    ||||||||| |||||| |||| || |||||| ||||||    |||||| ||||||||||||| ||| ||| |||||||| |||||  ||||| ||||||    
T  34835221 ttatatgtcccacatccgataaaatagtaaaggttgaacaccttataagtaagaggacccataaactcattgccttaaagttttgggtaagagtgtggt 34835319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 650 - 695
Target Start/End: Original strand, 9309104 - 9309149
Alignment:
Q  650 tatgcggttgttctaacctcgatgtggacgatcccccgaactcccc 695  Q
    |||| |||||||||| |||||||||||||| |||||||| ||||||    
T  9309104 tatgtggttgttctagcctcgatgtggacggtcccccgagctcccc 9309149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 650 - 695
Target Start/End: Original strand, 9309477 - 9309522
Alignment:
Q  650 tatgcggttgttctaacctcgatgtggacgatcccccgaactcccc 695  Q
    |||| |||||||||| |||||||||||||| |||||||| ||||||    
T  9309477 tatgtggttgttctagcctcgatgtggacggtcccccgagctcccc 9309522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 543 - 640
Target Start/End: Complemental strand, 20870718 - 20870621
Alignment:
Q  543 tatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattttgattaagaatgtggt 640  Q
    |||||||  |||||| |||| || |||||| ||||||  | |||||| ||||||||||||| ||||||  ||||||| ||||||  ||||| ||||||    
T  20870718 tatatgttccacatcagataaaatagtaaaggttgaacatcttataagtaagaggacccataaacccactgccttaagattttggataagagtgtggt 20870621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 652 - 685
Target Start/End: Complemental strand, 37544523 - 37544490
Alignment:
Q  652 tgcggttgttctaacctcgatgtggacgatcccc 685  Q
    ||||||||||||| ||||||||||||||||||||    
T  37544523 tgcggttgttctagcctcgatgtggacgatcccc 37544490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0734 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0734
Description:

Target: scaffold0734; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 525 - 619
Target Start/End: Original strand, 5772 - 5866
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaa 619  Q
    |||||||||||| ||| ||||||||| ||||||||||| || |||||| ||||||    |||||| ||||||||||||| ||||||| |||||||    
T  5772 ttgtgtgcaagtgtgagttatatgtcgcacatcggataaaatagtaaaggttgaacaccttataagtaagaggacccataaacccattgccttaa 5866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 655 - 708
Target Start/End: Original strand, 15773322 - 15773375
Alignment:
Q  655 ggttgttctaacctcgatgtggacgatcccccgaactccccttatgatccaaca 708  Q
    ||||||||||||||||||||||||||||| || ||||||||| |||||||||||    
T  15773322 ggttgttctaacctcgatgtggacgatcctcctaactcccctcatgatccaaca 15773375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 525 - 640
Target Start/End: Complemental strand, 12114725 - 12114610
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattt 624  Q
    |||||||||||| | | |||||| || ||||||||||||||||||||| ||||||    |||||| ||||||||||||| ||||||| | |||||  |||    
T  12114725 ttgtgtgcaagtgtaagttatatatcccacatcggatagaaaagtaaaggttgaacaccttataagtaagaggacccataaacccattgtcttaaggttt 12114626  T
Q  625 tgattaagaatgtggt 640  Q
    ||  ||||| ||||||    
T  12114625 tgggtaagagtgtggt 12114610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 525 - 640
Target Start/End: Original strand, 39914247 - 39914362
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattt 624  Q
    |||||||||||| ||| |||||||||||||||| |||| || |||| | ||||||    |||||||||||||||||||| |||| |  ||||||| ||||    
T  39914247 ttgtgtgcaagtgtgagttatatgtctcacatcagataaaacagtagaggttgaacaccttataaataagaggacccataaacctaatgccttaatattt 39914346  T
Q  625 tgattaagaatgtggt 640  Q
    ||  ||||| ||||||    
T  39914347 tggataagagtgtggt 39914362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 525 - 620
Target Start/End: Complemental strand, 49336850 - 49336755
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaa 620  Q
    |||||| ||||| ||| ||| ||||||||||||||||||||||||||| |||||     |||||| ||||||||||||| ||||||| | ||||||    
T  49336850 ttgtgtacaagtgtgagttacatgtctcacatcggatagaaaagtaaaggttgaccaccttataagtaagaggacccataaacccatagtcttaaa 49336755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 530 - 603
Target Start/End: Original strand, 37726504 - 37726577
Alignment:
Q  530 tgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccat 603  Q
    ||||||| ||| ||||||||||||||||||||| || ||||||||||||||   |||||| |||||||| ||||    
T  37726504 tgcaagtgtgagttatatgtctcacatcggataaaatagtaaatgttgaataccttataagtaagaggatccat 37726577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 525 - 640
Target Start/End: Complemental strand, 32463064 - 32462948
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagt-aaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaatt 623  Q
    |||||| ||||| ||| ||||||||| |||||||||||||| ||| ||| |||||||   |||||| ||||| ||| ||| ||||||| |||||||  ||    
T  32463064 ttgtgtacaagtgtgagttatatgtcccacatcggatagaagagtaaaaggttgaataccttataagtaagaagactcataaacccattgccttaaggtt 32462965  T
Q  624 ttgattaagaatgtggt 640  Q
    |||| ||||| ||||||    
T  32462964 ttgagtaagagtgtggt 32462948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 525 - 640
Target Start/End: Original strand, 9240144 - 9240259
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattt 624  Q
    |||||||||||| ||| ||||||||  ||||||||||||| ||||||| | ||||    |||||| ||||||||||||| || ||||  |||||| ||||    
T  9240144 ttgtgtgcaagtgtgagttatatgttccacatcggatagagaagtaaaagctgaacaccttataagtaagaggacccataaatccattaccttaagattt 9240243  T
Q  625 tgattaagaatgtggt 640  Q
     |  ||||||||||||    
T  9240244 cggataagaatgtggt 9240259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 528 - 619
Target Start/End: Complemental strand, 21832503 - 21832412
Alignment:
Q  528 tgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaa 619  Q
    ||||||||| ||| ||||||||| ||||| ||||||||||||||| ||||||    |||||| ||||||||| ||| ||| ||| |||||||    
T  21832503 tgtgcaagtgtgagttatatgtcccacattggatagaaaagtaaaggttgaacaccttataagtaagaggactcataaactcatagccttaa 21832412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 525 - 640
Target Start/End: Complemental strand, 37991140 - 37991025
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattt 624  Q
    |||||| ||||| ||| ||||||||||||||| ||||| || |||||| ||||||    |||||| |||||||||| || ||| |||||||||||  |||    
T  37991140 ttgtgtacaagtgtgagttatatgtctcacattggataaaatagtaaaggttgaacaccttataagtaagaggacctataaactcatcgccttaaggttt 37991041  T
Q  625 tgattaagaatgtggt 640  Q
    ||  ||||| ||||||    
T  37991040 tgggtaagagtgtggt 37991025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 552 - 639
Target Start/End: Complemental strand, 41359901 - 41359814
Alignment:
Q  552 cacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattttgattaagaatgtgg 639  Q
    ||||||||||| || |||||| |||||||   |||||| ||||||||||||| ||||||| |||||||  |||||  |||||||||||    
T  41359901 cacatcggatacaatagtaaaggttgaataccttataagtaagaggacccataaacccattgccttaaggttttgggtaagaatgtgg 41359814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 526 - 611
Target Start/End: Complemental strand, 1634477 - 1634391
Alignment:
Q  526 tgtgtgcaagtatgacttatatgtctcacatcggatagaaaagt-aaatgttgaatttattataaataagaggacccatcaacccat 611  Q
    ||||||||||| ||| ||||||||| |||||||||||||||| | ||| ||| ||   ||||||| ||||||||||||| |||||||    
T  1634477 tgtgtgcaagtgtgagttatatgtcccacatcggatagaaaaataaaaggttaaacacattataagtaagaggacccataaacccat 1634391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 525 - 603
Target Start/End: Original strand, 8327899 - 8327977
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccat 603  Q
    |||||||||||| ||| ||||||||| ||||||||||| || |||||| | ||||| | |||||| |||||| ||||||    
T  8327899 ttgtgtgcaagtgtgagttatatgtcccacatcggataaaagagtaaaggatgaatatcttataagtaagagaacccat 8327977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 530 - 640
Target Start/End: Original strand, 22304569 - 22304679
Alignment:
Q  530 tgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattttgatt 629  Q
    ||||||| |||  |||||||| ||||||||||| || |||||| |||||||   |||||| ||||||||||||| ||| ||| |||||||  |||||  |    
T  22304569 tgcaagtgtgagctatatgtcccacatcggataaaatagtaaaggttgaataccttataagtaagaggacccataaacacattgccttaaggttttgggt 22304668  T
Q  630 aagaatgtggt 640  Q
    |||| ||||||    
T  22304669 aagagtgtggt 22304679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 525 - 603
Target Start/End: Complemental strand, 25739588 - 25739510
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccat 603  Q
    |||||||||||| ||| ||||||||| ||||||||||| || |||||| ||||||  |  ||||| |||||||||||||    
T  25739588 ttgtgtgcaagtgtgagttatatgtcccacatcggataaaatagtaaaagttgaacatcatataagtaagaggacccat 25739510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 525 - 579
Target Start/End: Complemental strand, 33175827 - 33175773
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaa 579  Q
    |||||| ||||| ||| |||||||||||||||| |||||||||||||| ||||||    
T  33175827 ttgtgtacaagtgtgagttatatgtctcacatcagatagaaaagtaaaggttgaa 33175773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 525 - 619
Target Start/End: Original strand, 35946517 - 35946611
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaa 619  Q
    |||||| ||||| ||| ||||||||| ||||||||||| || |||||| ||||||    |||||| ||||||||||||| ||||| | |||||||    
T  35946517 ttgtgtacaagtgtgagttatatgtcccacatcggataaaacagtaaaggttgaacaccttataagtaagaggacccataaacccgttgccttaa 35946611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 526 - 611
Target Start/End: Complemental strand, 7767476 - 7767391
Alignment:
Q  526 tgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccat 611  Q
    |||||| |||| ||| ||||||||| ||||||||||||||||||||| |||| |    |||||| ||||||||| ||| |||||||    
T  7767476 tgtgtgtaagtctgagttatatgtcccacatcggatagaaaagtaaaggttggacactttataactaagaggactcataaacccat 7767391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 527 - 640
Target Start/End: Original strand, 15772851 - 15772964
Alignment:
Q  527 gtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattttg 626  Q
    |||||||||| ||| ||||||||| || |||||||| || |||||||||||||    |||||| ||||||||||||| ||| ||| || ||||  |||||    
T  15772851 gtgtgcaagtgtgagttatatgtcccatatcggataaaagagtaaatgttgaacaccttataagtaagaggacccataaactcattgctttaaggttttg 15772950  T
Q  627 attaagaatgtggt 640  Q
      ||||| ||||||    
T  15772951 gataagagtgtggt 15772964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 525 - 626
Target Start/End: Original strand, 15773187 - 15773288
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattt 624  Q
    |||||||||||| ||| ||||||||| ||||||| ||| || |||||| ||||||  | |||||| ||||||||| ||| | | ||| |||||||| |||    
T  15773187 ttgtgtgcaagtgtgagttatatgtcccacatcgaataaaagagtaaaagttgaacatcttataagtaagaggactcataagctcattgccttaaagttt 15773286  T
Q  625 tg 626  Q
    ||    
T  15773287 tg 15773288  T

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Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 652 - 701
Target Start/End: Original strand, 25755519 - 25755568
Alignment:
Q  652 tgcggttgttctaacctcgatgtggacgatcccccgaactccccttatga 701  Q
    ||||||||||||| |||||||||||| | |||||||||||||||| ||||    
T  25755519 tgcggttgttctagcctcgatgtggatggtcccccgaactcccctcatga 25755568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 521 - 566
Target Start/End: Complemental strand, 39336396 - 39336351
Alignment:
Q  521 actattgtgtgcaagtatgacttatatgtctcacatcggatagaaa 566  Q
    |||||||||||||||| ||| ||||||||| |||||||||||||||    
T  39336396 actattgtgtgcaagtgtgagttatatgtcccacatcggatagaaa 39336351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 525 - 569
Target Start/End: Complemental strand, 12747915 - 12747871
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagt 569  Q
    |||||||||||| ||| ||||||||| ||||||||||||||||||    
T  12747915 ttgtgtgcaagtgtgagttatatgtcccacatcggatagaaaagt 12747871  T

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Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 656 - 695
Target Start/End: Original strand, 37726625 - 37726664
Alignment:
Q  656 gttgttctaacctcgatgtggacgatcccccgaactcccc 695  Q
    ||||||||| |||||||||||||| |||||||||||||||    
T  37726625 gttgttctagcctcgatgtggacggtcccccgaactcccc 37726664  T

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Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 525 - 640
Target Start/End: Complemental strand, 37990802 - 37990687
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattt 624  Q
    |||||| ||||| ||| ||||||||  ||||||||||| || |||||||||||||    |||||| ||||||||| ||| ||| ||| |||||||  |||    
T  37990802 ttgtgtacaagtgtgagttatatgttccacatcggataaaatagtaaatgttgaacaccttataagtaagaggactcataaactcattgccttaaggttt 37990703  T
Q  625 tgattaagaatgtggt 640  Q
    ||  ||||| ||||||    
T  37990702 tgggtaagagtgtggt 37990687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 525 - 640
Target Start/End: Complemental strand, 54017979 - 54017864
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattt 624  Q
    |||||||||||| ||| |||||||||  |||||||||| || |||||| ||||||    |||||| ||||||||| ||| |||| | ||||||||  |||    
T  54017979 ttgtgtgcaagtgtgagttatatgtcctacatcggataaaagagtaaaggttgaacaccttataagtaagaggactcataaacctaacgccttaaggttt 54017880  T
Q  625 tgattaagaatgtggt 640  Q
    ||  ||||| ||||||    
T  54017879 tgggtaagagtgtggt 54017864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 530 - 640
Target Start/End: Original strand, 4823655 - 4823765
Alignment:
Q  530 tgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattttgatt 629  Q
    ||||||| ||| ||||| ||||||||||||||| || |||||| ||| ||    |||||| || |||||||||| ||| ||| ||||||| ||||||  |    
T  4823655 tgcaagtgtgagttataagtctcacatcggataaaatagtaaaagttaaacaccttataagtaggaggacccataaactcattgccttaagattttgggt 4823754  T
Q  630 aagaatgtggt 640  Q
    |||| ||||||    
T  4823755 aagagtgtggt 4823765  T

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Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 525 - 599
Target Start/End: Original strand, 25755389 - 25755463
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggac 599  Q
    |||||| ||||| ||| |||||||||||||||| |||| || |||||| |||||||   |||||| |||||||||    
T  25755389 ttgtgtacaagtgtgagttatatgtctcacatcagataaaagagtaaaggttgaataccttataagtaagaggac 25755463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 525 - 611
Target Start/End: Complemental strand, 29644744 - 29644658
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccat 611  Q
    |||||||||||| ||| ||||||||| ||||||||||  || |||||| ||||||    |||||| |||||| |||||| |||||||    
T  29644744 ttgtgtgcaagtgtgagttatatgtcccacatcggattaaagagtaaaggttgaacaccttataagtaagagaacccataaacccat 29644658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 525 - 611
Target Start/End: Complemental strand, 29645065 - 29644979
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccat 611  Q
    |||||||||||| | | ||||||||| ||||||||||| || |||||| ||| ||    |||||| ||||||||||||| |||||||    
T  29645065 ttgtgtgcaagtgtaagttatatgtcccacatcggataaaagagtaaaggttaaacaccttataagtaagaggacccataaacccat 29644979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 525 - 611
Target Start/End: Complemental strand, 33803415 - 33803329
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccat 611  Q
    |||||||||| | ||| ||||||||| ||||||||||| || |||||| ||||||     ||||| ||||||||||||| |||||||    
T  33803415 ttgtgtgcaattgtgagttatatgtcccacatcggataaaatagtaaaggttgaacaccatataagtaagaggacccataaacccat 33803329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 652 - 694
Target Start/End: Complemental strand, 42342123 - 42342081
Alignment:
Q  652 tgcggttgttctaacctcgatgtggacgatcccccgaactccc 694  Q
    ||||||||||||| |||||||||||||| ||| ||||||||||    
T  42342123 tgcggttgttctagcctcgatgtggacggtcctccgaactccc 42342081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 525 - 619
Target Start/End: Complemental strand, 42342253 - 42342159
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaa 619  Q
    |||||||||||| ||| | ||||||  ||||||||||| || |||||||||| |||   |||||| ||||||||| ||| ||| ||| |||||||    
T  42342253 ttgtgtgcaagtgtgattcatatgttccacatcggataaaagagtaaatgttcaatgccttataagtaagaggactcataaactcattgccttaa 42342159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 525 - 619
Target Start/End: Original strand, 52634671 - 52634764
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaa 619  Q
    |||||| ||||| ||| ||||||||| ||||||||||| || |||||| ||||||    |||||| ||||| ||||||| ||||||| |||||||    
T  52634671 ttgtgtacaagtgtgagttatatgtcccacatcggataaaacagtaaaggttgaacgccttataagtaaga-gacccataaacccattgccttaa 52634764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 525 - 579
Target Start/End: Original strand, 53577359 - 53577413
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaa 579  Q
    |||||||||||| ||| ||||||||| ||||||||||| || |||||| ||||||    
T  53577359 ttgtgtgcaagtgtgagttatatgtcacacatcggataaaacagtaaaggttgaa 53577413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 655 - 708
Target Start/End: Original strand, 9239941 - 9239994
Alignment:
Q  655 ggttgttctaacctcgatgtggacgatcccccgaactccccttatgatccaaca 708  Q
    |||| ||||| |||||||||||||| |||||| | ||||||| |||||||||||    
T  9239941 ggtttttctagcctcgatgtggacggtcccccaagctcccctcatgatccaaca 9239994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 530 - 603
Target Start/End: Original strand, 51886561 - 51886634
Alignment:
Q  530 tgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccat 603  Q
    ||||||| ||| ||||||||||||||||| ||| || |||||| ||||||  |  ||||| |||||||||||||    
T  51886561 tgcaagtgtgagttatatgtctcacatcgaataaaatagtaaaggttgaacatcatataagtaagaggacccat 51886634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 525 - 619
Target Start/End: Complemental strand, 17619 - 17525
Alignment:
Q  525 ttgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaa 619  Q
    |||||||||||| ||| ||||||||| |||||| |||| || |||||| ||||||    || ||| ||||||||||||| ||||||| |||||||    
T  17619 ttgtgtgcaagtgtgagttatatgtcacacatcagataaaatagtaaaggttgaacaccttgtaagtaagaggacccataaacccatagccttaa 17525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0702 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 532 - 640
Target Start/End: Complemental strand, 670 - 562
Alignment:
Q  532 caagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaattttgattaa 631  Q
    ||||| ||| ||||||||| |||||||| || || |||||| ||||||    |||||| ||||||||||||| ||||||| |||||||  |||||  |||    
T  670 caagtgtgagttatatgtcccacatcggttaaaagagtaaaggttgaacaccttataagtaagaggacccataaacccattgccttaaggttttgggtaa 571  T
Q  632 gaatgtggt 640  Q
    || ||||||    
T  570 gagtgtggt 562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 526 - 640
Target Start/End: Original strand, 47356 - 47470
Alignment:
Q  526 tgtgtgcaagtatgacttatatgtctcacatcggatagaaaagtaaatgttgaatttattataaataagaggacccatcaacccatcgccttaaaatttt 625  Q
    ||||||||||| ||| ||| |||||||||||| |||| || ||||||  |||||    |||||| |||||| | |||| ||||||| |||||||| ||||    
T  47356 tgtgtgcaagtgtgaattaaatgtctcacatccgataaaatagtaaagtttgaacaccttataagtaagagaatccataaacccattgccttaaagtttt 47455  T
Q  626 gattaagaatgtggt 640  Q
    |  ||| ||||||||    
T  47456 gggtaaaaatgtggt 47470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 653 - 686
Target Start/End: Original strand, 47486 - 47519
Alignment:
Q  653 gcggttgttctaacctcgatgtggacgatccccc 686  Q
    ||||||||||||||||||||||||||| ||||||    
T  47486 gcggttgttctaacctcgatgtggacggtccccc 47519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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