View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0716_low_4 (Length: 465)

Name: NF0716_low_4
Description: NF0716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0716_low_4
NF0716_low_4
[»] chr7 (10 HSPs)
chr7 (227-458)||(8907745-8907978)
chr7 (29-162)||(8907547-8907680)
chr7 (271-404)||(11743038-11743170)
chr7 (335-406)||(31257036-31257107)
chr7 (299-384)||(28080694-28080778)
chr7 (350-406)||(48417535-48417591)
chr7 (350-446)||(21213061-21213159)
chr7 (327-406)||(23796181-23796260)
chr7 (321-406)||(2544438-2544523)
chr7 (240-389)||(48661466-48661614)
[»] chr2 (10 HSPs)
chr2 (240-406)||(15124694-15124859)
chr2 (335-389)||(8424913-8424967)
chr2 (335-389)||(25082542-25082596)
chr2 (328-389)||(15460999-15461060)
chr2 (313-406)||(17854912-17855005)
chr2 (313-406)||(36352142-36352235)
chr2 (314-389)||(5206723-5206798)
chr2 (299-406)||(33606259-33606365)
chr2 (232-384)||(16419297-16419448)
chr2 (350-406)||(40718227-40718283)
[»] chr5 (9 HSPs)
chr5 (313-406)||(20225049-20225142)
chr5 (321-389)||(1564558-1564626)
chr5 (232-384)||(24346639-24346791)
chr5 (321-389)||(25258292-25258360)
chr5 (321-389)||(25322082-25322150)
chr5 (321-384)||(6919420-6919482)
chr5 (335-389)||(33337460-33337514)
chr5 (313-406)||(38731821-38731914)
chr5 (325-389)||(15439012-15439076)
[»] chr8 (5 HSPs)
chr8 (240-389)||(3157470-3157618)
chr8 (335-384)||(8084392-8084441)
chr8 (338-406)||(16050037-16050105)
chr8 (336-406)||(34843125-34843195)
chr8 (313-406)||(10614922-10615015)
[»] chr6 (5 HSPs)
chr6 (321-406)||(6054177-6054262)
chr6 (315-406)||(27993627-27993719)
chr6 (315-384)||(10145735-10145804)
chr6 (321-406)||(6542934-6543019)
chr6 (321-406)||(9705028-9705113)
[»] chr4 (9 HSPs)
chr4 (326-369)||(5398177-5398220)
chr4 (240-381)||(35819039-35819179)
chr4 (321-384)||(21750268-21750331)
chr4 (334-389)||(30305299-30305354)
chr4 (335-406)||(36685880-36685951)
chr4 (335-389)||(18528222-18528276)
chr4 (329-382)||(43743251-43743304)
chr4 (321-389)||(18528448-18528516)
chr4 (351-407)||(35796998-35797054)
[»] chr3 (4 HSPs)
chr3 (240-406)||(13574831-13574997)
chr3 (325-389)||(20303059-20303123)
chr3 (240-384)||(37246764-37246907)
chr3 (321-406)||(54567900-54567985)
[»] chr1 (6 HSPs)
chr1 (321-368)||(16162979-16163026)
chr1 (313-380)||(38733185-38733252)
chr1 (334-389)||(46176751-46176806)
chr1 (335-389)||(25145490-25145544)
chr1 (244-389)||(27413372-27413516)
chr1 (313-369)||(9499290-9499346)


Alignment Details
Target: chr7 (Bit Score: 179; Significance: 2e-96; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 227 - 458
Target Start/End: Original strand, 8907745 - 8907978
Alignment:
Q  227 atcattattgagtttggttcgtcgacataaatgttggatgcctagatagtgaaaatctggtagcaggtagttcaatagatcttaatagagactatgatat 326  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8907745 atcattattgagtttggttcgtcgacataaatgttggatgcctagatagtgaaaatctggtagcaggtagttcaatagatcttaatagagactatgatat 8907844  T
Q  327 catcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataa--acatgttcatgcaaccgtttg 424  Q
    |||||||||||||||| ||||||||||||||||   |||||||| |||| |||| ||||||||||||||||||||||  |||||||||||| | ||||||    
T  8907845 catcttgaaaatcgtgattgaatctaacacaactatacaaaactaatttatgagatgatgatttctctcatttataaacacatgttcatgccatcgtttg 8907944  T
Q  425 tttgatgcgagattttttaacaatagtattatct 458  Q
    |||||||||||||| |||||||||||||| ||||    
T  8907945 tttgatgcgagattctttaacaatagtataatct 8907978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 29 - 162
Target Start/End: Original strand, 8907547 - 8907680
Alignment:
Q  29 aacagtgttacagaaaaaagagatgaaagtgtttgtaatgtccattttcatgccatttgatcatgtagggccgacaacaaggacggattcagccgtctat 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8907547 aacagtgttacagaaaaaagagatgaaagtgtttgtaatgtccattttcatgccatttgatcatgtagggccgacaacaaggacggattcagccgtctat 8907646  T
Q  129 tacccaacaactccctctcctgttaaagcctgtc 162  Q
    ||||||||||||||||||||||||||||||||||    
T  8907647 tacccaacaactccctctcctgttaaagcctgtc 8907680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 271 - 404
Target Start/End: Complemental strand, 11743170 - 11743038
Alignment:
Q  271 gatagtgaaaatctggtagcaggtagttcaatagatcttaatagagactatgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaact 370  Q
    ||||| |||||||||  |||| || ||| ||| |||||| | |||| || |||||||||||| |||||||||||| | ||||||||||   ||||||||     
T  11743170 gatagcgaaaatctgagagcaagtggtttaatggatcttga-agaggctctgatatcatcttaaaaatcgtggttaagtctaacacaattccacaaaacc 11743072  T
Q  371 gatttgtgaggtgatgatttctctcatttataaa 404  Q
    | ||||||| ||||||||| ||| ||||||||||    
T  11743071 ggtttgtgatgtgatgattgctcccatttataaa 11743038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 335 - 406
Target Start/End: Original strand, 31257036 - 31257107
Alignment:
Q  335 aaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 406  Q
    ||||||||||||| |||||||||||| |||||||||| |||||||||||| |||| | | || |||||||||    
T  31257036 aaatcgtggttgagtctaacacaaccccacaaaactggtttgtgaggtgaagattgcccccacttataaaca 31257107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 299 - 384
Target Start/End: Complemental strand, 28080778 - 28080694
Alignment:
Q  299 caatagatcttaatagagactatgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtga 384  Q
    ||||||||||| | |||| || ||||||||||||  |||||||||||| |||||||| |||| |||||||| || |||||| ||||    
T  28080778 caatagatcttga-agaggctctgatatcatcttagaaatcgtggttggatctaacataaccccacaaaaccgacttgtgaagtga 28080694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 350 - 406
Target Start/End: Original strand, 48417535 - 48417591
Alignment:
Q  350 ctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 406  Q
    ||||||||||| |||||||||| |||||||||| | |||| |||||| |||||||||    
T  48417535 ctaacacaaccccacaaaactggtttgtgaggtcaagattgctctcacttataaaca 48417591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 446
Target Start/End: Original strand, 21213061 - 21213159
Alignment:
Q  350 ctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataa--acatgttcatgcaaccgtttgtttgatgcgagattttttaaca 446  Q
    ||||||||||  ||||||||  | |||||||||||||||| ||| || ||||||  |||||||||||||| | ||| | ||||||| |||| |||||||    
T  21213061 ctaacacaactccacaaaaccaacttgtgaggtgatgattactcccacttataaacacatgttcatgcaatcttttatctgatgcgggattctttaaca 21213159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 406
Target Start/End: Original strand, 23796181 - 23796260
Alignment:
Q  327 catcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 406  Q
    |||||| |||||| |||||||  ||||||||||| |||||||   |||||||||||||||||| | | || |||||||||    
T  23796181 catcttaaaaatcatggttgagcctaacacaaccccacaaaatcaatttgtgaggtgatgattgcccccacttataaaca 23796260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 406
Target Start/End: Original strand, 2544438 - 2544523
Alignment:
Q  321 tgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 406  Q
    ||||| ||| || |||||||||||||   ||||||||||| |||||||| || ||||||||||| |||| | | || |||||||||    
T  2544438 tgataccatattaaaaatcgtggttgggcctaacacaaccccacaaaaccgacttgtgaggtgaggattgcccccacttataaaca 2544523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 389
Target Start/End: Original strand, 48661466 - 48661614
Alignment:
Q  240 ttggttcgtcgacataaatgttggatgcctagatagtgaaaatctggtagcaggtagttcaatagatcttaatagagactatgatatcatcttgaaaatc 339  Q
    ||||||||| |||||||||| ||| || |  || || | ||| ||| |||||||| | ||||| | |||||| |||| || ||||||||| ||  |||||    
T  48661466 ttggttcgtggacataaatggtgggtggcccgaaagcggaaacctgatagcaggtggctcaatggttcttaa-agaggctctgatatcatattagaaatc 48661564  T
Q  340 gtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 389  Q
    |||||||  |||||||||| | |||||||| |  ||||||||||| ||||    
T  48661565 gtggttgggtctaacacaatctcacaaaaccggcttgtgaggtgaggatt 48661614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 240 - 406
Target Start/End: Original strand, 15124694 - 15124859
Alignment:
Q  240 ttggttcgtcgacataaatgttggatgcctagatagtgaaaatctggtagcaggtagttcaatagatcttaatagagactatgatatcatcttgaaaatc 339  Q
    ||||||||| |||||||||| |||||| |  ||||  ||||| ||| |||||||| || |||| ||||||   ||||||| ||||| ||||||  |||||    
T  15124694 ttggttcgtggacataaatggtggatgacccgataacgaaaacctgatagcaggtggtccaatggatcttgg-agagactctgataccatcttagaaatc 15124792  T
Q  340 gtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 406  Q
    |||||||  |||||||||||| |||||||| || |||||| |||| |||| | |||| |||||||||    
T  15124793 gtggttgggtctaacacaaccccacaaaaccgaattgtgaagtgaagattgccctcacttataaaca 15124859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 389
Target Start/End: Complemental strand, 8424967 - 8424913
Alignment:
Q  335 aaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 389  Q
    |||||||||||||   |||||||||| |||||||||| |||||||||||||||||    
T  8424967 aaatcgtggttgagcttaacacaaccccacaaaactggtttgtgaggtgatgatt 8424913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 389
Target Start/End: Original strand, 25082542 - 25082596
Alignment:
Q  335 aaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 389  Q
    |||||||||||| | ||||||||||| ||||||||||  ||||||||||||||||    
T  25082542 aaatcgtggttggacctaacacaaccccacaaaactggcttgtgaggtgatgatt 25082596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 328 - 389
Target Start/End: Complemental strand, 15461060 - 15460999
Alignment:
Q  328 atcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 389  Q
    ||||| |||||  ||||||| |||||||||||| ||||||||||  ||||||||||||||||    
T  15461060 atcttaaaaattatggttgagtctaacacaaccccacaaaactgtcttgtgaggtgatgatt 15460999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 313 - 406
Target Start/End: Original strand, 17854912 - 17855005
Alignment:
Q  313 agagactatgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 406  Q
    ||||||| ||||||||| ||  ||||||||||||  |||| ||||||| |||||||| |  ||||||||||| |||| | |||| |||||||||    
T  17854912 agagactctgatatcatattagaaatcgtggttgggtctagcacaaccccacaaaaccggcttgtgaggtgaggattgccctcacttataaaca 17855005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 313 - 406
Target Start/End: Original strand, 36352142 - 36352235
Alignment:
Q  313 agagactatgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 406  Q
    ||||||| | ||| |||||| ||||| ||||||||| ||||||||||| |||||||| |  || ||||||||||||| | | || |||||||||    
T  36352142 agagactctaataccatcttaaaaattgtggttgaacctaacacaaccccacaaaaccggcttttgaggtgatgattgcccccacttataaaca 36352235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 389
Target Start/End: Complemental strand, 5206798 - 5206723
Alignment:
Q  314 gagactatgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 389  Q
    |||||| ||||| ||||||  |||||||| |||| ||| |||||||| ||||||||||| |||| |||||| ||||    
T  5206798 gagactctgataacatcttagaaatcgtgattgagtcttacacaacctcacaaaactgacttgtaaggtgaagatt 5206723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 406
Target Start/End: Original strand, 33606259 - 33606365
Alignment:
Q  299 caatagatcttaatagagactatgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatt 398  Q
    ||||||||||| | ||||||| ||||||||||||  ||||||||||||   |||||| |||  ||||||||||  ||||||||||| |||| | | || |    
T  33606259 caatagatcttga-agagactttgatatcatcttagaaatcgtggttgtgcctaacataacgccacaaaactggcttgtgaggtgaggattacccccact 33606357  T
Q  399 tataaaca 406  Q
    ||||||||    
T  33606358 tataaaca 33606365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 384
Target Start/End: Complemental strand, 16419448 - 16419297
Alignment:
Q  232 tattgagtttggttcgtcgacataaatgttggatgcctagatagtgaaaatctggtagcaggtagttcaatagatcttaatagagactatgatatcatct 331  Q
    ||||||| ||||||||| |||||||||| ||| || || ||||| | ||| ||| |||||||| |  |||| ||||||   |||| || ||||| |||||    
T  16419448 tattgagcttggttcgtggacataaatggtgggtggctcgatagcggaaacctgatagcaggtggcccaatggatcttgg-agaggctctgataccatct 16419350  T
Q  332 tgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtga 384  Q
    |  ||||||||||||   |||| |||||| |||||||| |  |||||||||||    
T  16419349 tagaaatcgtggttgggcctaatacaaccccacaaaaccggcttgtgaggtga 16419297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 406
Target Start/End: Original strand, 40718227 - 40718283
Alignment:
Q  350 ctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 406  Q
    ||||||||||  |||||||| | ||||||||||||||||| | |||| |||||||||    
T  40718227 ctaacacaactccacaaaaccggtttgtgaggtgatgattgccctcacttataaaca 40718283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 313 - 406
Target Start/End: Complemental strand, 20225142 - 20225049
Alignment:
Q  313 agagactatgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 406  Q
    |||| |||||||||||| ||  |||||||||||||| ||||||||||| |||||||  || ||||||||||| ||||   ||||||||||||||    
T  20225142 agaggctatgatatcattttagaaatcgtggttgaacctaacacaaccccacaaaatcgacttgtgaggtgaggattgtcctcatttataaaca 20225049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 321 - 389
Target Start/End: Original strand, 1564558 - 1564626
Alignment:
Q  321 tgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 389  Q
    ||||||||||||  |||||||||||||  ||||||||||| ||||||||||  |||||| |||| ||||    
T  1564558 tgatatcatcttagaaatcgtggttgagcctaacacaaccccacaaaactgtcttgtgatgtgaggatt 1564626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 232 - 384
Target Start/End: Original strand, 24346639 - 24346791
Alignment:
Q  232 tattgagtttggttcgtcgacataaatgttggatgcctagatagtgaaaatctggtagcaggtagttcaatagatcttaatagagactatgatatcatct 331  Q
    ||||||| ||||||||| |||||||||| ||| || |  ||||  | ||| ||| |||||||| |  |||| ||||||    ||| || ||||| |||||    
T  24346639 tattgagcttggttcgtggacataaatggtgggtggcccgataacggaaacctgatagcaggtggcccaatggatcttggaggaggctctgataccatct 24346738  T
Q  332 tgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtga 384  Q
    | |||||||||||||  |||||||||||| |||||||| |  |||||||||||    
T  24346739 taaaaatcgtggttgggtctaacacaaccccacaaaaccggcttgtgaggtga 24346791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 321 - 389
Target Start/End: Original strand, 25258292 - 25258360
Alignment:
Q  321 tgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 389  Q
    ||||| ||||||  ||||||||||||| | |||||||||| |||||||| || ||||||||||| ||||    
T  25258292 tgataccatcttagaaatcgtggttgagtttaacacaaccccacaaaaccgacttgtgaggtgaggatt 25258360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 321 - 389
Target Start/End: Original strand, 25322082 - 25322150
Alignment:
Q  321 tgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 389  Q
    ||||| ||||||  ||||||||||||| | |||||||||| |||||||| || ||||||||||| ||||    
T  25322082 tgataccatcttagaaatcgtggttgagtttaacacaaccccacaaaaccgacttgtgaggtgaggatt 25322150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 384
Target Start/End: Original strand, 6919420 - 6919482
Alignment:
Q  321 tgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtga 384  Q
    ||||| |||||| ||||||||||||||  ||||||||||| ||||||||||  |||||||||||    
T  6919420 tgataccatcttaaaaatcgtggttgagcctaacacaacctcacaaaactg-cttgtgaggtga 6919482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 389
Target Start/End: Original strand, 33337460 - 33337514
Alignment:
Q  335 aaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 389  Q
    |||||||||||||| ||||||||||| |||||||| | |||||||| ||| ||||    
T  33337460 aaatcgtggttgaacctaacacaaccccacaaaaccggtttgtgagatgaggatt 33337514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 406
Target Start/End: Original strand, 38731821 - 38731914
Alignment:
Q  313 agagactatgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 406  Q
    |||| |||||||| ||||||  |||| |||||||   ||||||||||| |||||||  || ||||||||||| ||||  ||||| |||||||||    
T  38731821 agaggctatgatagcatcttagaaatggtggttgtgcctaacacaacctcacaaaatcgacttgtgaggtgaggattgttctcacttataaaca 38731914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 389
Target Start/End: Complemental strand, 15439076 - 15439012
Alignment:
Q  325 atcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 389  Q
    ||||||||  |||||||||||    ||||||||||| || |||||||| ||||||||||||||||    
T  15439076 atcatcttataaatcgtggttaggcctaacacaaccccataaaactgacttgtgaggtgatgatt 15439012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 240 - 389
Target Start/End: Original strand, 3157470 - 3157618
Alignment:
Q  240 ttggttcgtcgacataaatgttggatgcctagatagtgaaaatctggtagcaggtagttcaatagatcttaatagagactatgatatcatcttgaaaatc 339  Q
    ||||||||| |||||||||| ||| || |  ||||| ||||| ||| |||||||| || |||| ||| ||   |||| || ||||||||||||  ||||     
T  3157470 ttggttcgtggacataaatggtgggtgtcccgatagcgaaaacctgatagcaggtggtccaatggattttgg-agaggctctgatatcatcttataaatg 3157568  T
Q  340 gtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 389  Q
    ||||||||  ||||||||||| ||||||||||  ||||||||||| ||||    
T  3157569 gtggttgagcctaacacaaccccacaaaactggcttgtgaggtgaggatt 3157618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 335 - 384
Target Start/End: Complemental strand, 8084441 - 8084392
Alignment:
Q  335 aaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtga 384  Q
    |||||||||||| | ||||||||||| |||||||||| ||||||||||||    
T  8084441 aaatcgtggttggacctaacacaacctcacaaaactggtttgtgaggtga 8084392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 338 - 406
Target Start/End: Complemental strand, 16050105 - 16050037
Alignment:
Q  338 tcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 406  Q
    |||||||||  |||||||||||| ||||||||||| ||||||||||| |||| |  ||| |||||||||    
T  16050105 tcgtggttgggtctaacacaaccccacaaaactgacttgtgaggtgaggattgccttcacttataaaca 16050037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 406
Target Start/End: Complemental strand, 34843195 - 34843125
Alignment:
Q  336 aatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 406  Q
    |||||||||| | |||||||||||| |||||||| |  ||||||||||| |||| ||| || |||||||||    
T  34843195 aatcgtggttcagtctaacacaaccccacaaaaccggcttgtgaggtgaggattgctcccacttataaaca 34843125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 406
Target Start/End: Original strand, 10614922 - 10615015
Alignment:
Q  313 agagactatgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 406  Q
    |||| |||||||||||||||  |||||||||||||  |||| |||||| |||||||  |  ||||||||||| |||| | | ||||| ||||||    
T  10614922 agaggctatgatatcatcttataaatcgtggttgagcctaatacaaccccacaaaatcggcttgtgaggtgaagattacccccatttgtaaaca 10615015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 321 - 406
Target Start/End: Complemental strand, 6054262 - 6054177
Alignment:
Q  321 tgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 406  Q
    ||||||||||||  ||||||||||||| |||||||| | | ||||||||||| || |||||||||||||   |||| |||||||||    
T  6054262 tgatatcatcttagaaatcgtggttgagtctaacacgatcccacaaaactgacttatgaggtgatgattgtcctcacttataaaca 6054177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 315 - 406
Target Start/End: Original strand, 27993627 - 27993719
Alignment:
Q  315 agactatgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatga-tttctctcatttataaaca 406  Q
    ||||| ||||| ||| || |||||||| | || ||||||||||||| ||||||||| | ||||||||||| || |||| ||||||||||||||    
T  27993627 agactctgataccattttaaaaatcgtagatggatctaacacaacctcacaaaactaagttgtgaggtgaggattttccctcatttataaaca 27993719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 315 - 384
Target Start/End: Original strand, 10145735 - 10145804
Alignment:
Q  315 agactatgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtga 384  Q
    ||||| ||||||||||||  |||| ||||||||  |||||||||||  |||||||||| |||||||||||    
T  10145735 agactctgatatcatcttagaaattgtggttgagcctaacacaaccctacaaaactgacttgtgaggtga 10145804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 406
Target Start/End: Original strand, 6542934 - 6543019
Alignment:
Q  321 tgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 406  Q
    ||||| ||||||  ||||||||||||  |||||||||||| |||||||| |  || ||||||||||||| | | || |||||||||    
T  6542934 tgataccatctttgaaatcgtggttgggtctaacacaaccccacaaaaccggcttctgaggtgatgattgcccccacttataaaca 6543019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 406
Target Start/End: Complemental strand, 9705113 - 9705028
Alignment:
Q  321 tgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 406  Q
    ||||| ||||||  |||| |||||||   ||||||||||| |||||||| || |||||||||||||||| | | || |||||||||    
T  9705113 tgataccatcttagaaatggtggttgggcctaacacaaccccacaaaaccgacttgtgaggtgatgattgcccccacttataaaca 9705028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 326 - 369
Target Start/End: Original strand, 5398177 - 5398220
Alignment:
Q  326 tcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaac 369  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||    
T  5398177 tcatcttaaaaatcgtggttgaatctaacacaaccccacaaaac 5398220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 381
Target Start/End: Original strand, 35819039 - 35819179
Alignment:
Q  240 ttggttcgtcgacataaatgttggatgcctagatagtgaaaatctggtagcaggtagttcaatagatcttaatagagactatgatatcatcttgaaaatc 339  Q
    ||||||||| |||||||||| ||| || |  ||||| | ||| ||| |||||||| |  |||| |||||||  ||||||| ||||  |||||| ||||||    
T  35819039 ttggttcgtggacataaatggtgggtgacccgatagcggaaacctgatagcaggtggcccaatggatcttag-agagactctgatgccatcttaaaaatc 35819137  T
Q  340 gtggttgaatctaacacaaccgcacaaaactgatttgtgagg 381  Q
    |||||||   ||||||||||| ||||||||||  ||||||||    
T  35819138 gtggttgggcctaacacaacctcacaaaactggcttgtgagg 35819179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 384
Target Start/End: Original strand, 21750268 - 21750331
Alignment:
Q  321 tgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtga 384  Q
    ||||| |||||| ||| ||||| |||  |||||||||||| |||||||||| ||||||||||||    
T  21750268 tgataccatcttaaaattcgtgattgggtctaacacaacctcacaaaactggtttgtgaggtga 21750331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 389
Target Start/End: Complemental strand, 30305354 - 30305299
Alignment:
Q  334 aaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 389  Q
    ||||||||||||||   |||||||||  ||||||| ||||||||||||||||||||    
T  30305354 aaaatcgtggttgagcataacacaactccacaaaattgatttgtgaggtgatgatt 30305299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 406
Target Start/End: Original strand, 36685880 - 36685951
Alignment:
Q  335 aaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 406  Q
    ||||||||||||  ||||| |||||| ||||||||||| ||||||||||| |||  | | ||||||||||||    
T  36685880 aaatcgtggttgggtctaatacaaccccacaaaactgacttgtgaggtgaggataacccccatttataaaca 36685951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 389
Target Start/End: Original strand, 18528222 - 18528276
Alignment:
Q  335 aaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 389  Q
    |||||||||||| |||||||||||||  ||||||  |||||||||||||| ||||    
T  18528222 aaatcgtggttggatctaacacaaccctacaaaatcgatttgtgaggtgaggatt 18528276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 382
Target Start/End: Complemental strand, 43743304 - 43743251
Alignment:
Q  329 tcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggt 382  Q
    ||||| |||||||| |||  |||||||||||| |||||||| ||||||||||||    
T  43743304 tcttggaaatcgtgtttgggtctaacacaaccccacaaaaccgatttgtgaggt 43743251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 389
Target Start/End: Original strand, 18528448 - 18528516
Alignment:
Q  321 tgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 389  Q
    ||||| ||||||  ||||||||||||  ||||||| || | |||||||| |||||||||||||| ||||    
T  18528448 tgataccatcttagaaatcgtggttgggtctaacaaaatctcacaaaaccgatttgtgaggtgaggatt 18528516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 407
Target Start/End: Original strand, 35796998 - 35797054
Alignment:
Q  351 taacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaacat 407  Q
    |||||||||| |||||||||| |||||||||||| |||| | | || ||||||||||    
T  35796998 taacacaaccccacaaaactggtttgtgaggtgaggattgcccccacttataaacat 35797054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 240 - 406
Target Start/End: Original strand, 13574831 - 13574997
Alignment:
Q  240 ttggttcgtcgacataaatgttggatgcctagatagtgaaaatctggtagcaggtagttcaatagatcttaatagagactatgatatcatcttgaaaatc 339  Q
    ||||||||| |||||||||| ||| || |  ||||| | ||| ||| |||||||| |  |||| ||||||||  ||| || ||||| ||| ||  ||||     
T  13574831 ttggttcgtggacataaatggtgggtgacacgatagcggaaacctgatagcaggtggcccaatggatcttaactgaggctttgataccatattagaaatt 13574930  T
Q  340 gtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 406  Q
    |||||||   ||||||||||| ||||||||||  ||||||||||| |||||| | || |||||||||    
T  13574931 gtggttgggcctaacacaaccccacaaaactggcttgtgaggtgaggatttcccccacttataaaca 13574997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 325 - 389
Target Start/End: Original strand, 20303059 - 20303123
Alignment:
Q  325 atcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 389  Q
    |||||||| ||||||||||||||  ||||||||| | |||||||| | |||||||||||| ||||    
T  20303059 atcatcttaaaaatcgtggttgagcctaacacaatcccacaaaaccggtttgtgaggtgaggatt 20303123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 384
Target Start/End: Original strand, 37246764 - 37246907
Alignment:
Q  240 ttggttcgtcgacataaatgttggatgcctagatagtgaaaatctggtagcaggtagttcaatagatcttaatagagactatgatatcatcttgaaaatc 339  Q
    ||||||||| |||||||||| |||||| |  ||||  ||||| ||  |||||||| || ||||  ||||| | | ||||| ||||| |||||| ||||||    
T  37246764 ttggttcgttgacataaatggtggatgacccgataacgaaaacctaatagcaggtggtccaatgaatcttga-atagactttgataccatcttaaaaatc 37246862  T
Q  340 gtggttgaatctaacacaaccgcacaaaactgatttgtgaggtga 384  Q
     | ||||| |||||||||||  |||||| | ||||||||||||||    
T  37246863 attgttgagtctaacacaactccacaaatccgatttgtgaggtga 37246907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 406
Target Start/End: Complemental strand, 54567985 - 54567900
Alignment:
Q  321 tgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatttctctcatttataaaca 406  Q
    ||||| ||||||  ||||||||||||   ||||||||||| |||||||| |  ||||||||||| |||||| | || |||||||||    
T  54567985 tgataccatcttagaaatcgtggttgggcctaacacaaccccacaaaaccggcttgtgaggtgaggatttcccccacttataaaca 54567900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 368
Target Start/End: Complemental strand, 16163026 - 16162979
Alignment:
Q  321 tgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaa 368  Q
    |||||||||||| ||||| |||||||| |||||||||||| |||||||    
T  16163026 tgatatcatcttaaaaattgtggttgagtctaacacaaccccacaaaa 16162979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 380
Target Start/End: Complemental strand, 38733252 - 38733185
Alignment:
Q  313 agagactatgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgag 380  Q
    ||||||| ||||| ||||||  |||||||||||||| ||||||||| | |||||||| || |||||||    
T  38733252 agagactctgataccatcttagaaatcgtggttgaacctaacacaatctcacaaaaccgacttgtgag 38733185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 389
Target Start/End: Complemental strand, 46176806 - 46176751
Alignment:
Q  334 aaaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 389  Q
    |||||| |||||||  ||||||||| | ||||||||||||||||||| ||||||||    
T  46176806 aaaatcatggttgagcctaacacaaacccacaaaactgatttgtgagatgatgatt 46176751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 389
Target Start/End: Original strand, 25145490 - 25145544
Alignment:
Q  335 aaatcgtggttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 389  Q
    ||||||||||||  |||||||||||| |||||||| || ||||||||||| ||||    
T  25145490 aaatcgtggttgggtctaacacaacctcacaaaaccgacttgtgaggtgaggatt 25145544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 389
Target Start/End: Complemental strand, 27413516 - 27413372
Alignment:
Q  244 ttcgtcgacataaatgttggatgcctagatagtgaaaatctggtagcaggtagttcaatagatcttaatagagactatgatatcatcttgaaaatcgtgg 343  Q
    ||||| |||||||||| ||| || |  ||||| | ||||||| || ||||| ||  ||||||||||   |||| || ||||||||||||  |||||||||    
T  27413516 ttcgtggacataaatggtgggtggcccgatagcggaaatctgataacaggtggtctaatagatcttgg-agaggctctgatatcatcttagaaatcgtgg 27413418  T
Q  344 ttgaatctaacacaaccgcacaaaactgatttgtgaggtgatgatt 389  Q
    ||| | ||||||||||| |||||||  |  ||||||||||| ||||    
T  27413417 ttggacctaacacaacctcacaaaatcggcttgtgaggtgaggatt 27413372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 369
Target Start/End: Complemental strand, 9499346 - 9499290
Alignment:
Q  313 agagactatgatatcatcttgaaaatcgtggttgaatctaacacaaccgcacaaaac 369  Q
    ||||||| ||||||||| ||  ||||||||||||| || ||||||||| ||||||||    
T  9499346 agagactctgatatcattttagaaatcgtggttgagtcgaacacaaccccacaaaac 9499290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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