View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0717_high_5 (Length: 261)

Name: NF0717_high_5
Description: NF0717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0717_high_5
NF0717_high_5
[»] chr4 (5 HSPs)
chr4 (2-241)||(21800968-21801207)
chr4 (1-232)||(45892962-45893189)
chr4 (1-198)||(48665470-48665663)
chr4 (83-232)||(12583525-12583673)
chr4 (8-188)||(49421029-49421208)
[»] chr7 (9 HSPs)
chr7 (1-232)||(23773061-23773288)
chr7 (61-232)||(26469940-26470112)
chr7 (61-232)||(26546380-26546552)
chr7 (10-215)||(11275814-11276006)
chr7 (6-116)||(22859647-22859752)
chr7 (4-66)||(26469812-26469869)
chr7 (4-66)||(26546284-26546341)
chr7 (38-111)||(12119548-12119621)
chr7 (8-69)||(33435765-33435822)
[»] scaffold0219 (1 HSPs)
scaffold0219 (1-228)||(6216-6439)
[»] chr3 (1 HSPs)
chr3 (4-232)||(6000194-6000418)
[»] chr2 (3 HSPs)
chr2 (1-232)||(36658045-36658272)
chr2 (40-94)||(20361543-20361597)
chr2 (40-101)||(20429347-20429409)
[»] scaffold0527 (2 HSPs)
scaffold0527 (1-236)||(3599-3825)
scaffold0527 (60-236)||(11662-11834)
[»] chr6 (1 HSPs)
chr6 (8-229)||(23660945-23661162)
[»] chr8 (2 HSPs)
chr8 (8-224)||(923420-923630)
chr8 (39-82)||(42773176-42773219)
[»] chr1 (2 HSPs)
chr1 (15-199)||(16180807-16180990)
chr1 (38-103)||(9004840-9004906)
[»] chr5 (1 HSPs)
chr5 (39-215)||(32538367-32538546)


Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 2 - 241
Target Start/End: Original strand, 21800968 - 21801207
Alignment:
Q  2 ttgccacaatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatgaaaatatattt 101  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  21800968 ttgccacaatgatgataaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgttacgtgtttttatgtataaatgaaaatatattt 21801067  T
Q  102 atgggtttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaacgcc 201  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21801068 atgggtttcagatcaccgttgattaagcgccgcaacagctgtcctttcaaagtcttggtgtgtgttgattctattgtggtcactggttttgttcaacgcc 21801167  T
Q  202 gtcgttgtcttgtagagatctggtgttgacgtgatgatgt 241  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  21801168 gtcgttgtcttgtagagatctggtgttgacgtgattatgt 21801207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 45893189 - 45892962
Alignment:
Q  1 tttgccacaatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatgaaaa-tatat 99  Q
    |||||| |||||||||||||||||||||||||||||     | |||||||| | ||||||||||||||| |||||||||||||||||||||||| |||||    
T  45893189 tttgcctcaatgatgacaaatatgtgtcacatgttt-----tcatgtttatcaatggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatat 45893095  T
Q  100 ttatgggtttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaacg 199  Q
    |||| |||||||||||  ||||||| ||||||||| ||  ||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||     
T  45893094 ttataggtttcagatcgtcgttgatgaagcgccgccacggctgtccttttagagtcttggtgtgtgttgattctattgtggtcgctggtttcgttcaaca 45892995  T
Q  200 ccgtcgttgtcttgtagagatctggtgttgacg 232  Q
     ||| |||||||| ||||| | |||||||||||    
T  45892994 tcgttgttgtcttatagagctatggtgttgacg 45892962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 48665470 - 48665663
Alignment:
Q  1 tttgccacaatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatgaaaata-tat 99  Q
    |||||| |||||||||||||||||||||||||||||     |||||||||| ||||||||||||||||| |||||||||||||||||||||||| | |||    
T  48665470 tttgccgcaatgatgacaaatatgtgtcacatgttt-----ttatgtttatcagtggtaaatatatgtcccgtgtttttatgtataaatgaaaaaaatat 48665564  T
Q  100 ttatgggtttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaac 198  Q
    |||||||||| |||||  ||| ||| |||||||||| |  ||||||||||||||||||  ||||||||||||||||||||||  ||||||| |||||||    
T  48665565 ttatgggttttagatcgtcgtcgatgaagcgccgcagcggctgtcctttcagagtctttttgtgtgttgattctattgtggttgctggtttcgttcaac 48665663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 83 - 232
Target Start/End: Complemental strand, 12583673 - 12583525
Alignment:
Q  83 tataaatgaaaa-tatatttatgggtttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggt 181  Q
    |||||||||||| |||||||||||||||||||||  ||| ||| ||||||| || | |||||||||||| |||| ||||||||  ||||| |||||| ||    
T  12583673 tataaatgaaaaatatatttatgggtttcagatcgtcgtcgatgaagcgcctcagcgactgtcctttcatagtcatggtgtgt--tgattatattgtcgt 12583576  T
Q  182 cactggttttgttcaacgccgtcgttgtcttgtagagatctggtgttgacg 232  Q
    ||||||||| |||||||| ||| |||||||||||||| |||||||||||||    
T  12583575 cactggtttcgttcaacgtcgttgttgtcttgtagagctctggtgttgacg 12583525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 188
Target Start/End: Complemental strand, 49421208 - 49421029
Alignment:
Q  8 caatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatg-aaaatatatttatggg 106  Q
    ||||||||| ||||| ||||| ||| |||  |||||||||||||||||| |||| ||||||| ||| |||||||| ||||| | |||||||||||||| |    
T  49421208 caatgatgataaatacgtgtctcatattt--tttttatgtttattagtgataaacatatgtctcgtatttttatgcataaaagaaaaatatatttatgag 49421111  T
Q  107 tttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggt 188  Q
    ||| | |||| ||| | | |||||||||  | |||||||| ||| ||||||| |||  ||||||||| |||| |||||||||    
T  49421110 ttttatatcatcgtcggtgaagcgccgccccgactgtcctctcacagtcttgatgtaagttgattctgttgttgtcactggt 49421029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 129; Significance: 7e-67; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 23773061 - 23773288
Alignment:
Q  1 tttgccacaatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatg-aaaatatat 99  Q
    |||||| |||||||||||||||||||||||| |     ||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||    
T  23773061 tttgccgcaatgatgacaaatatgtgtcacagg-----tttttatgtttatcagtggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatat 23773155  T
Q  100 ttatgggtttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaacg 199  Q
    ||||| ||||||||||  ||| ||| |||||||||| |  || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  23773156 ttatgagtttcagatcgtcgtcgatgaagcgccgcagcggctatcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgtttaaca 23773255  T
Q  200 ccgtcgttgtcttgtagagatctggtgttgacg 232  Q
     ||||||||| |||||||| | |||||||||||    
T  23773256 tcgtcgttgtattgtagagctatggtgttgacg 23773288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 61 - 232
Target Start/End: Original strand, 26469940 - 26470112
Alignment:
Q  61 atatatgtcacgtgtttttatgtataaatg-aaaatatatttatgggtttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttgg 159  Q
    |||||| || ||||||||| |||||||||| |||||||||||||||||||||| ||  ||| ||| |||||||||| |   |||||||| | ||||||||    
T  26469940 atatatatcccgtgtttttgtgtataaatggaaaatatatttatgggtttcagttcgtcgtcgatgaagcgccgcagcggttgtccttttaaagtcttgg 26470039  T
Q  160 tgtgtgttgattctattgtggtcactggttttgttcaacgccgtcgttgtcttgtagagatctggtgttgacg 232  Q
    |||||||||||||||| |||||||||||||| |||||||  |||||  ||||||||||| | |||||||||||    
T  26470040 tgtgtgttgattctatcgtggtcactggtttcgttcaacatcgtcgacgtcttgtagagctatggtgttgacg 26470112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 61 - 232
Target Start/End: Original strand, 26546380 - 26546552
Alignment:
Q  61 atatatgtcacgtgtttttatgtataaatg-aaaatatatttatgggtttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttgg 159  Q
    |||||| || ||||||||| |||||||||| |||||||||||||||||||||| ||  ||| ||| |||||||||| |   |||||||| | ||||||||    
T  26546380 atatatatcccgtgtttttgtgtataaatggaaaatatatttatgggtttcagttcgtcgtcgatgaagcgccgcagcggttgtccttttaaagtcttgg 26546479  T
Q  160 tgtgtgttgattctattgtggtcactggttttgttcaacgccgtcgttgtcttgtagagatctggtgttgacg 232  Q
    |||||||||||||||| |||||||||||||| |||||||  |||||  ||||||||||| | |||||||||||    
T  26546480 tgtgtgttgattctatcgtggtcactggtttcgttcaacatcgtcgacgtcttgtagagctatggtgttgacg 26546552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 10 - 215
Target Start/End: Original strand, 11275814 - 11276006
Alignment:
Q  10 atgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatgaaaa-tatatttatgggtt 108  Q
    ||||||||||||||||||| ||| | |    |||| ||||||||||| ||||||||||||| || |||||||| ||||| ||||| |||||||| || ||    
T  11275814 atgatgacaaatatgtgtctcatatct----tttacgtttattagtgataaatatatgtcatgt-tttttatgcataaaagaaaaatatatttagggatt 11275908  T
Q  109 tcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaacgccgtcgttg 208  Q
    |||||||  ||         ||| ||  |||||||||| ||| |||||||||||| ||||||| | |||||||||||| |||||| ||||| ||| ||||    
T  11275909 tcagatcttcg---------cgcagccgcaactgtcctctcacagtcttggtgtgagttgattatgttgtggtcactgattttgtacaacgtcgttgttg 11275999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 116
Target Start/End: Original strand, 22859647 - 22859752
Alignment:
Q  6 cacaatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttt-tatgtataaatgaaaatatatttatg 104  Q
    ||||||||| | |||||||||||||||      ||||||||||||||  || | ||||||||||  ||||||| ||||||||||||||||||||||||||    
T  22859647 cacaatgataataaatatgtgtcacat------tttttatgtttattgatgatgaatatatgtccggtgttttttatgtataaatgaaaatatatttatg 22859740  T
Q  105 ggtttcagatca 116  Q
    ||||||| ||||    
T  22859741 ggtttcatatca 22859752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 26469812 - 26469869
Alignment:
Q  4 gccacaatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatat 66  Q
    ||||||||||||||||||||||||||||||     ||||||||||||| ||||||||||||||    
T  26469812 gccacaatgatgacaaatatgtgtcacatg-----tttttatgtttatcagtggtaaatatat 26469869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 26546284 - 26546341
Alignment:
Q  4 gccacaatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatat 66  Q
    ||||||||||||||||||||||||||||||     ||||||||||||| ||||||||||||||    
T  26546284 gccacaatgatgacaaatatgtgtcacatg-----tttttatgtttatcagtggtaaatatat 26546341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 38 - 111
Target Start/End: Original strand, 12119548 - 12119621
Alignment:
Q  38 ttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatg-aaaatatatttatgggtttca 111  Q
    |||||||||||||||| || |||||||||||| | || ||||||| ||||||| ||||||||||||| |||||||    
T  12119548 ttttttatgtttattattgataaatatatgtcccatg-ttttatgcataaatgaaaaatatatttataggtttca 12119621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 33435765 - 33435822
Alignment:
Q  8 caatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtc 69  Q
    ||||||||||||||||||||| ||    | |||||||| ||| |||||||||||||||||||    
T  33435765 caatgatgacaaatatgtgtccca----tattttttatttttgttagtggtaaatatatgtc 33435822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 6439 - 6216
Alignment:
Q  1 tttgccacaatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatg-aaaatatat 99  Q
    ||||| ||||||||||||||||||||||||||||||     |||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||    
T  6439 tttgctacaatgatgacaaatatgtgtcacatgttt-----ttatgtttatcagtggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatat 6345  T
Q  100 ttatgggtttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaacg 199  Q
    ||| ||||||||||||  |||  || | |||| ||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  6344 ttacgggtttcagatcgtcgtcaatgacgcgctgcagcggctgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggtttcgttaaacg 6245  T
Q  200 ccgtcgttgtcttgtagagatctggtgtt 228  Q
      ||||||||||||||||| | |||||||    
T  6244 tagtcgttgtcttgtagagttatggtgtt 6216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 7e-58; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 4 - 232
Target Start/End: Complemental strand, 6000418 - 6000194
Alignment:
Q  4 gccacaatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatgaaaa-tatattta 102  Q
    |||||||||||||||||||||||||||||||||     |||||||||| |||||||||||||| || ||||||||| |||||||||||||| ||||||||    
T  6000418 gccacaatgatgacaaatatgtgtcacatgttt-----ttatgtttatcagtggtaaatatatatcccgtgtttttgtgtataaatgaaaaatatattta 6000324  T
Q  103 tgggtttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaacgccg 202  Q
    ||||||| || |   ||| ||| |||||||||| |  ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||  ||    
T  6000323 tgggttttagtttgtcgtcgatgaagcgccgcagcggctgtccttttagagtcttggtgtgtgttgattctattgtggtcactggtttcgttcaacatcg 6000224  T
Q  203 tcgttgtcttgtagagatctggtgttgacg 232  Q
    |||  ||||||||||| | |||||||||||    
T  6000223 tcgacgtcttgtagagctatggtgttgacg 6000194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 113; Significance: 3e-57; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 36658045 - 36658272
Alignment:
Q  1 tttgccacaatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatgaaaa-tatat 99  Q
    ||||||||||||||||||||||||||||||||||||     |||||||||| |||| |||||||||||| |||||||||||||||||||||||| |||||    
T  36658045 tttgccacaatgatgacaaatatgtgtcacatgttt-----ttatgtttatcagtgataaatatatgtcccgtgtttttatgtataaatgaaaagtatat 36658139  T
Q  100 ttatgggtttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaacg 199  Q
    ||||||||||||||||  | | ||| |||||||||| |  ||||||| | ||||||||| | ||||| ||||||||||||||||||||||| ||||||||    
T  36658140 ttatgggtttcagatcgtcatcgatgaagcgccgcatcggctgtcctgttagagtcttgctttgtgtggattctattgtggtcactggtttcgttcaacg 36658239  T
Q  200 ccgtcgttgtcttgtagagatctggtgttgacg 232  Q
     |||  ||||||||||||| | || ||||||||    
T  36658240 tcgttattgtcttgtagagctatgatgttgacg 36658272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 94
Target Start/End: Complemental strand, 20361597 - 20361543
Alignment:
Q  40 ttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatgaaaa 94  Q
    ||||||||||||||||  ||||||||||||  |||||||||||||||| ||||||    
T  20361597 ttttatgtttattagttataaatatatgtcttgtgtttttatgtataagtgaaaa 20361543  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 20429409 - 20429347
Alignment:
Q  40 ttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaat-gaaaatatattt 101  Q
    ||||||||||||||||  ||||||||||||  |||||||||||||| | | ||||||||||||    
T  20429409 ttttatgtttattagttataaatatatgtcttgtgtttttatgtatcagtggaaaatatattt 20429347  T

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Target: scaffold0527 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 3825 - 3599
Alignment:
Q  1 tttgccacaatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatg-aaaatatat 99  Q
    |||||| |||||||||||||||||||||||||||||     |||||||||| |||||| |||||||||| |||||||||||||||||||| |||||||||    
T  3825 tttgccgcaatgatgacaaatatgtgtcacatgttt-----ttatgtttatcagtggtgaatatatgtcccgtgtttttatgtataaatgaaaaatatat 3731  T
Q  100 ttatgggtttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaacg 199  Q
    |||||||||| |||||  ||| ||| ||||||| || |  ||||||||| |||     ||||||||||||||||||||||||  ||||||| |||||| |    
T  3730 ttatgggttttagatcgtcgtcgatgaagcgccacagcggctgtccttttaga-----ggtgtgtgttgattctattgtggttgctggtttcgttcaagg 3636  T
Q  200 ccgtcgttgtcttgtagagatctggtgttgacgtgat 236  Q
     |||||||||||| ||||| | |||| ||||||||||    
T  3635 tcgtcgttgtcttatagagctatggtattgacgtgat 3599  T

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Target: scaffold0527; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 60 - 236
Target Start/End: Complemental strand, 11834 - 11662
Alignment:
Q  60 aatatatgtcacgtgtttttatgtataaatgaaaa-tatatttatgggtttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttg 158  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||  ||| ||| ||||||| || |  ||||||||| ||||         
T  11834 aatatatgtcccgtgtttttatgtataaatgaaaaatatatttatgggttttagatcgtcgtcgatgaagcgccacagcggctgtccttttagag----- 11740  T
Q  159 gtgtgtgttgattctattgtggtcactggttttgttcaacgccgtcgttgtcttgtagagatctggtgttgacgtgat 236  Q
    |||||||||||||||||||||||  ||||||| |||||| | |||||||||||| ||||| | |||| ||||||||||    
T  11739 gtgtgtgttgattctattgtggttgctggtttcgttcaaggtcgtcgttgtcttatagagctatggtattgacgtgat 11662  T

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Target: chr6 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 8 - 229
Target Start/End: Original strand, 23660945 - 23661162
Alignment:
Q  8 caatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatgaaaa-tatatttatggg 106  Q
    ||||||||| |||||||||||||||||||     |||||||||| |||| ||||||||| ||  | ||||||||||||||||||||| ||||||||||||    
T  23660945 caatgatgagaaatatgtgtcacatgttt-----ttatgtttatcagtgctaaatatatatcctgcgtttttatgtataaatgaaaaatatatttatggg 23661039  T
Q  107 tttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaacgccgtcgt 206  Q
    ||||||| |    |  || |||||||||| |  |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||   ||||||    
T  23661040 tttcagaccgtgatccatgaagcgccgcagcgcctgtcctttcagggtcttggtgtgtgttgattctattgtggtcactggtttcgttcaagttcgtcgt 23661139  T
Q  207 tgtcttgtagagatctggtgttg 229  Q
    |||||||||||| | ||||||||    
T  23661140 tgtcttgtagagctatggtgttg 23661162  T

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Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 8 - 224
Target Start/End: Original strand, 923420 - 923630
Alignment:
Q  8 caatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatgaaaatatatttatgggt 107  Q
    |||||||||||||||||| ||||||||||  |||||||||||||||||| ||||||||||||  ||| |||||||| ||||||||||||||||||||||     
T  923420 caatgatgacaaatatgt-tcacatgttt--tttttatgtttattagtgataaatatatgtccggtgcttttatgtgtaaatgaaaatatatttatgggg 923516  T
Q  108 ttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaacgccgtcgtt 207  Q
    | ||||| | ||| ||| || |||  || || |||||| ||||  ||||||| |||| || |||| |||||||||| | ||||  ||||||| |||||||    
T  923517 tccagat-atcgtcgatgaaccgc--caccacctgtcccttcatcgtcttggcgtgtcttaattccattgtggtcattagtttcattcaacgtcgtcgtt 923613  T
Q  208 gtcttgtagagatctgg 224  Q
    ||| ||||||| |||||    
T  923614 gtcatgtagagctctgg 923630  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 82
Target Start/End: Complemental strand, 42773219 - 42773176
Alignment:
Q  39 tttttatgtttattagtggtaaatatatgtcacgtgtttttatg 82  Q
    |||||||||||||||||| |||||||||||| | ||||||||||    
T  42773219 tttttatgtttattagtgataaatatatgtctcatgtttttatg 42773176  T

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Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 15 - 199
Target Start/End: Complemental strand, 16180990 - 16180807
Alignment:
Q  15 gacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatg-aaaatatatttatgggtttcaga 113  Q
    ||||||||||||||||||||||  |||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||| | |  ||||||||||||    
T  16180990 gacaaatatgtgtcacatgttt--tttttatgtttattagtgataaatatatgtcccgtgtttttatgtataaatgaaaaatgtgtagatgggtttcaga 16180893  T
Q  114 tcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaacg 199  Q
    ||  ||| ||| ||||  ||    |  |||||||||| | | |||||||||||||||||  ||||||||||| |||| ||||||||    
T  16180892 tcgtcgtcgatgaagcatcgtcgtaggtgtcctttcacaattttggtgtgtgttgattccgttgtggtcactagtttcgttcaacg 16180807  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 103
Target Start/End: Original strand, 9004840 - 9004906
Alignment:
Q  38 ttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatga-aaatatatttat 103  Q
    |||||||||| |||||||| |||||||||||||| |||||||||| |||||||| ||||||||||||    
T  9004840 ttttttatgtctattagtgataaatatatgtcacttgtttttatgcataaatgagaaatatatttat 9004906  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 215
Target Start/End: Complemental strand, 32538546 - 32538367
Alignment:
Q  39 tttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatgaaa---atatatttatgggtttcagatcaccgttgattaagcgccgca 135  Q
    ||||||||||||||||||   || ||||||| |||||||||||| ||||| ||||   |||| ||| || |||| |||||| ||| | | ||||| |||     
T  32538546 tttttatgtttattagtgaagaacatatgtctcgtgtttttatgcataaaagaaaaatatatttttgtgagttttagatcatcgtcggtgaagcgtcgcc 32538447  T
Q  136 acaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaacgccgtcgttgtcttgta 215  Q
     | ||| |||| ||| ||||||||| || ||||||| | || |||||| ||||||  ||||||  |||||||||||||||    
T  32538446 ccgactatcctctcacagtcttggtttgagttgattatgttatggtcattggtttcattcaacatcgtcgttgtcttgta 32538367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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