View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0717_high_7 (Length: 252)

Name: NF0717_high_7
Description: NF0717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0717_high_7
NF0717_high_7
[»] chr4 (4 HSPs)
chr4 (3-135)||(21800718-21800848)
chr4 (95-129)||(14269596-14269630)
chr4 (98-135)||(45893309-45893346)
chr4 (101-135)||(49421305-49421339)
[»] chr2 (2 HSPs)
chr2 (95-135)||(29463343-29463383)
chr2 (98-135)||(36657891-36657928)
[»] scaffold0445 (1 HSPs)
scaffold0445 (98-135)||(7122-7159)
[»] chr7 (3 HSPs)
chr7 (97-135)||(26469657-26469695)
chr7 (97-135)||(26546129-26546167)
chr7 (95-125)||(46463667-46463697)
[»] chr3 (1 HSPs)
chr3 (97-127)||(11217966-11217996)
[»] chr6 (1 HSPs)
chr6 (98-135)||(23660778-23660815)
[»] chr5 (1 HSPs)
chr5 (98-126)||(30739538-30739566)


Alignment Details
Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 3 - 135
Target Start/End: Original strand, 21800718 - 21800848
Alignment:
Q  3 gatgtcgaagaatattcacctcgaacttggagtgtacaannnnnnnnnnaattaacaacttattaaataatatatttattacttgcatgtactatactag 102  Q
    |||| |||| |||||||||||||||||||||||||||||          ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  21800718 gatgccgaataatattcacctcgaacttggagtgtacaatttttttt--aattaacaacttattgaataatatatttattacttgcatgtactatactag 21800815  T
Q  103 tgtgttaacccgtgcaatgcacgggtgatagac 135  Q
    |||||||||||||||||||||||||||||||||    
T  21800816 tgtgttaacccgtgcaatgcacgggtgatagac 21800848  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 95 - 129
Target Start/End: Complemental strand, 14269630 - 14269596
Alignment:
Q  95 tatactagtgtgttaacccgtgcaatgcacgggtg 129  Q
    |||||||||||||||||||||||||||||||||||    
T  14269630 tatactagtgtgttaacccgtgcaatgcacgggtg 14269596  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 135
Target Start/End: Complemental strand, 45893346 - 45893309
Alignment:
Q  98 actagtgtgttaacccgtgcaatgcacgggtgatagac 135  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  45893346 actagtgtgttaacccgtgcaatgcgcgggtgatagac 45893309  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 135
Target Start/End: Complemental strand, 49421339 - 49421305
Alignment:
Q  101 agtgtgttaacccgtgcaatgcacgggtgatagac 135  Q
    |||||||||||||| ||||||||||||||||||||    
T  49421339 agtgtgttaacccgcgcaatgcacgggtgatagac 49421305  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 95 - 135
Target Start/End: Original strand, 29463343 - 29463383
Alignment:
Q  95 tatactagtgtgttaacccgtgcaatgcacgggtgatagac 135  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  29463343 tatactagtgtgttaacccgtgcaatgcacgggtgatagac 29463383  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 135
Target Start/End: Original strand, 36657891 - 36657928
Alignment:
Q  98 actagtgtgttaacccgtgcaatgcacgggtgatagac 135  Q
    ||||||||||||||||||||||||||||||||||||||    
T  36657891 actagtgtgttaacccgtgcaatgcacgggtgatagac 36657928  T

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Target: scaffold0445 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 135
Target Start/End: Complemental strand, 7159 - 7122
Alignment:
Q  98 actagtgtgttaacccgtgcaatgcacgggtgatagac 135  Q
    |||||||||||||| |||||||||||||||||||||||    
T  7159 actagtgtgttaactcgtgcaatgcacgggtgatagac 7122  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 135
Target Start/End: Original strand, 26469657 - 26469695
Alignment:
Q  97 tactagtgtgttaacccgtgcaatgcacgggtgatagac 135  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  26469657 tactagtgtgttaacccttgcgatgcacgggtgatagac 26469695  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 135
Target Start/End: Original strand, 26546129 - 26546167
Alignment:
Q  97 tactagtgtgttaacccgtgcaatgcacgggtgatagac 135  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  26546129 tactagtgtgttaacccttgcgatgcacgggtgatagac 26546167  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 125
Target Start/End: Complemental strand, 46463697 - 46463667
Alignment:
Q  95 tatactagtgtgttaacccgtgcaatgcacg 125  Q
    |||||||||||||||||||||||||||||||    
T  46463697 tatactagtgtgttaacccgtgcaatgcacg 46463667  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 127
Target Start/End: Complemental strand, 11217996 - 11217966
Alignment:
Q  97 tactagtgtgttaacccgtgcaatgcacggg 127  Q
    |||||||||||||||||||||||||||||||    
T  11217996 tactagtgtgttaacccgtgcaatgcacggg 11217966  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 135
Target Start/End: Original strand, 23660778 - 23660815
Alignment:
Q  98 actagtgtgttaacccgtgcaatgcacgggtgatagac 135  Q
    ||||||| ||||||| ||||||||||||||||||||||    
T  23660778 actagtgcgttaaccggtgcaatgcacgggtgatagac 23660815  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 126
Target Start/End: Original strand, 30739538 - 30739566
Alignment:
Q  98 actagtgtgttaacccgtgcaatgcacgg 126  Q
    |||||||||||||||||||||||||||||    
T  30739538 actagtgtgttaacccgtgcaatgcacgg 30739566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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