View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0717_low_1 (Length: 831)
Name: NF0717_low_1
Description: NF0717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0717_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 283 - 732
Target Start/End: Original strand, 41115601 - 41116041
Alignment:
| Q |
283 |
tcatagcaaatgattttaatagcaaataatatccattagcattattgtatttatttgaaatgctgttatacgtagaggtgaatgtggtctgatttagaca |
382 |
Q |
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| T |
41115601 |
tcatagcaaatgattttaatagcaaataatatccattagcattattgtatttatttgaaatgctgttatacatagaggtgaatgtggtctgatttagaca |
41115700 |
T |
|
| Q |
383 |
cagaagttgcaaattctagacaaataaaaggtatacaaagagcaacattcttcaaagctcgtctggccatgtttgaatgatcaaacacatattgtcctgt |
482 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41115701 |
cagaagttgcaaattctagacaaataaaaggtatacaaagagcaacattcttcaaagctcgtctggccatgtttgaatgatcaaacacatattgtcctgt |
41115800 |
T |
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| Q |
483 |
cctattattttctacctgcaaaaaggtaaacgacatacaaattaattaagagattcatataaggaagagttaaagttannnnnnnaataattccaggcag |
582 |
Q |
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| T |
41115801 |
cctattattttctacctgcaaaaaggtaaacaacatacaaattaattaagagattcatataaggaagagttaaagttatttttttaataattccaggcag |
41115900 |
T |
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| Q |
583 |
ctttggacaaaaaggcttactatactaaggaactctgatctcacagttcactcgcaagctgcttcccgatgaaagactcaacagtatgaacagtgtcagg |
682 |
Q |
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| T |
41115901 |
ctttggacaaaaaggcatactataataaggaactctgatctcacagttcactcgcaagctgcttcccgatgaaagactcaacagca---------tcagg |
41115991 |
T |
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| Q |
683 |
gtctgcaacttccatcatgtccattatttctccctcaccaggaagagtta |
732 |
Q |
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| T |
41115992 |
gtctgcaacttccatcatgtccattatttctccctcaccaggaagagtta |
41116041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 25 - 213
Target Start/End: Original strand, 41115345 - 41115531
Alignment:
| Q |
25 |
acatcatcacgagttttaccagggttctgagctagggaagccaatgctgcaaactgctcggtcatatttgtagcagttttgtattcttgaagtgctaggt |
124 |
Q |
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| T |
41115345 |
acatcatcacgagttttaccagggttctgagctagggaagccaatgctgcaaactgctcggtcatatttgtagcagtt--gtattcttgaagtgctaggt |
41115442 |
T |
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| Q |
125 |
tcgtgaattcttgatcctcaagggatgcaagataagctaacaatcagagaaaaacaaaaattagagatgacctgctaccaacatgaatg |
213 |
Q |
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| T |
41115443 |
tcgtgaattcttgatcctcaagggatgcaagataagctaacaatcagagaaaaacaaaaattagagatgacctgctaccaacatgaatg |
41115531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 25 - 199
Target Start/End: Original strand, 41101806 - 41101978
Alignment:
| Q |
25 |
acatcatcacgagttttaccagggttctgagctagggaagccaatgctgcaaactgctcggtcatatttgtagcagttttgtattcttgaagtgctaggt |
124 |
Q |
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|||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
41101806 |
acatcatcacgagttttaccagggttctgaactacggaggccaatgctgcaaactgctcggtcatatttgtagcagttttgtattcttgaagtgcaaggt |
41101905 |
T |
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| Q |
125 |
tcgtgaattcttgatcctcaagggatgcaagataagctaacaatcagagaaaaacaaaaattagagatgacctgc |
199 |
Q |
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| T |
41101906 |
tggtgaattcttgatcctcaagggatgcaagataagctgccaatc--aaacaaacaaaaattagatatgatctgc |
41101978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 608 - 732
Target Start/End: Original strand, 41102379 - 41102501
Alignment:
| Q |
608 |
taaggaactctgatctcacagttcactcgcaagctgcttcccgatgaaagactcaacagtatgaacagtgtcagggtctgcaacttccatcatgtccatt |
707 |
Q |
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| T |
41102379 |
taaggaactctgatctca--gttcactcgcaagctgcttcctgatgaaagaccgaacagtataaacagcatcagggtctgcaactttcatcatgtccatt |
41102476 |
T |
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| Q |
708 |
atttctccctcaccaggaagagtta |
732 |
Q |
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| T |
41102477 |
atttctccctcaccaggcagagtta |
41102501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 404 - 513
Target Start/End: Original strand, 41102145 - 41102260
Alignment:
| Q |
404 |
aaataaaaggtatacaa---agagcaacattcttcaaagctcgtctggccatgtttgaatgatcaaacacatattgtcctg---tcctattattttctac |
497 |
Q |
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||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| || |
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| T |
41102145 |
aaataaaaggtatactaccaagagcaatattcttcaaagctcgtctggccatgtttgaatgatcaaacacatattcgcctgagctcctattattttcaac |
41102244 |
T |
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| Q |
498 |
ctgcaaaaaggtaaac |
513 |
Q |
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| T |
41102245 |
ctgcaaaaagggaaac |
41102260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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