View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0717_low_10 (Length: 315)
Name: NF0717_low_10
Description: NF0717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0717_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 139; Significance: 1e-72; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 92 - 246
Target Start/End: Complemental strand, 341457 - 341303
Alignment:
| Q |
92 |
taatcaacgccgttagcatatcaacatgatgagcatcatcactttcagcattgatttcatttttgttacaatttttctttagctcttcgcgctttgaagc |
191 |
Q |
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| T |
341457 |
taatcaatgccgttaacatatcaacatgatgagcatcatcactttcagcattgatttcatttttgttacaatttttctttagctcttcgcgctttgaagc |
341358 |
T |
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| Q |
192 |
aatacacgaaaagaggaattgatcaaataccttgcatgcctctgtcatattcttc |
246 |
Q |
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| T |
341357 |
aatacacgaaaagaggaattgatcaaataccttgcatgcctcagtcattttcttc |
341303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 92 - 239
Target Start/End: Complemental strand, 333165 - 333018
Alignment:
| Q |
92 |
taatcaacgccgttagcatatcaacatgatgagcatcatcactttcagcattgatttcatttttgttacaatttttctttagctcttcgcgctttgaagc |
191 |
Q |
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||||||||| ||| |||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
333165 |
taatcaacgtcgtaagcaaatcaacatgatgagcatcgtcactttcaacattgatttcatttttgttacaattttgctttagctcttcgcgctttgaagc |
333066 |
T |
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| Q |
192 |
aatacacgaaaagaggaattgatcaaataccttgcatgcctctgtcat |
239 |
Q |
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| T |
333065 |
tatacacgaaaataggaatttatcaaatactttgcatgcctcggtcat |
333018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 100 - 239
Target Start/End: Complemental strand, 337411 - 337272
Alignment:
| Q |
100 |
gccgttagcatatcaacatgatgagcatcatcactttcagcattgatttcatttttgttacaatttttctttagctcttcgcgctttgaagcaatacacg |
199 |
Q |
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|||||||||| |||||||||||||||||||| ||||| | |||| |||||||||||||||| ||||||||||||||||||| |||||||| ||||||| |
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| T |
337411 |
gccgttagcaaatcaacatgatgagcatcattactttgaccattaatttcatttttgttaccgtttttctttagctcttcgcattttgaagctatacacg |
337312 |
T |
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| Q |
200 |
aaaagaggaattgatcaaataccttgcatgcctctgtcat |
239 |
Q |
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|| | ||||||||||||||||| |||||||| || ||||| |
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| T |
337311 |
aatataggaattgatcaaatactttgcatgcttcagtcat |
337272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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