View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0717_low_11 (Length: 295)
Name: NF0717_low_11
Description: NF0717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0717_low_11 |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 31045332 - 31045049
Alignment:
| Q |
1 |
caattggatacggataaaatatgtactcataattcaatggaattttagagaaagagagggctatatgaacatgtttgcatgagtttaaattttgaatctt |
100 |
Q |
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| T |
31045332 |
caattggatacggataaaatatgtactcataattcaatggaattttagagaaagagagggttatatgaacatgtttgcatgagtttaaattttgaatctt |
31045233 |
T |
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| Q |
101 |
aatttacatatacaaaaagtttttaatgtgaagatgaagacttgttatatgccgcaaacttcgtttggtgaggctttaggagaagagcaacttttccttt |
200 |
Q |
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| T |
31045232 |
aatttacatatacaaaaagtttttaatgtgaagatgaagacttgttatatgccgcaagcttcgtttggtgaggctttaggagaatagcaacttttccttt |
31045133 |
T |
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| Q |
201 |
acatacactgctgcataccttgcatgtgatgattcatgtcacactgtttatggtctttatctgagctctttgcttatagttcat |
284 |
Q |
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| T |
31045132 |
acatacactgctgaataccttgcatgagatgattcatgtcagactgtttatggtctttatctgagctctttgcttatagttcat |
31045049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 172041 - 172338
Alignment:
| Q |
1 |
caattggatacggataaaatatgtactcataattcaatggaattttagagaaagagagggctatatgaacatgtttgcatgagtttaaattttgaatctt |
100 |
Q |
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||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||| || ||||||||| ||| |
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| T |
172041 |
caattggatacggatgaaatatgtactaataattcaatggaatttcagagaaagagaggattatatgaacatgtttgcatgagattgaattttgaa-ctt |
172139 |
T |
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| Q |
101 |
aatttacatatacaaaaagtttttaatgtgaagatgaagacttgttatatgcc------gcaaacttcgtttggtgaggctttaggagaagagcaac-tt |
193 |
Q |
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||||||||||||||||| ||||||||||||||||||||||| |||||||| | ||| |||||||||||| ||||||| |||||||||||| || |
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| T |
172140 |
aatttacatatacaaaatgtttttaatgtgaagatgaagacctgttatatatcttctaatcaagcttcgtttggtgtggctttaagagaagagcaacatt |
172239 |
T |
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| Q |
194 |
ttcctt-tacatacactgc---tgcatacc--ttgcatgtgatgattcatgtcacac--tgtttatggtctttatctgagctctttgcttatagttcat |
284 |
Q |
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|||||| || | || | | | || ||| || |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||| |
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| T |
172240 |
ttccttctagaaacgtttcctttacacacccgtttcatgtgatgattcatgtcacactttgtttatggtctttatctgagctatttgcttataattcat |
172338 |
T |
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