View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0717_low_13 (Length: 255)
Name: NF0717_low_13
Description: NF0717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0717_low_13 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 48 - 255
Target Start/End: Original strand, 29066378 - 29066585
Alignment:
| Q |
48 |
cccaatgaacatccacttgttgcattaagcactcaaaacaacaacacaaggagtnnnnnnnnnnnnnnnnnnnatgacttgcttcttcacaaagacattc |
147 |
Q |
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| T |
29066378 |
cccaatgaacatccacttgttgcattaagcactcaaaacaacaacacaaggagtacacacacacacacacacaatgacttgcttcttctcaaagacattc |
29066477 |
T |
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| Q |
148 |
attgtactattagtccttttcttgacaaattgtgtatacattgaagctcaaaaatgcaaccctaatggtatagttaaaggtaaaagtccttcagggcgtt |
247 |
Q |
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|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29066478 |
attgcactattagtccttttcttgacaaattgtctatacattgaagctcaaaaatgcaaccctaatggtatagttaaaggtaaaagtccttcagggcgtt |
29066577 |
T |
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| Q |
248 |
gcaagcac |
255 |
Q |
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|||||||| |
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| T |
29066578 |
gcaagcac |
29066585 |
T |
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