View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0717_low_14 (Length: 252)
Name: NF0717_low_14
Description: NF0717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0717_low_14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 28990722 - 28990958
Alignment:
| Q |
1 |
taacgaaatcttgggagaaaaatgtgaaatttctaagggtatgatacaactacaagatcacccaaaagaatttggtagggttgagaatttgagaaaaatt |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
28990722 |
taacgaaatcttggaagaaaaatgtgaaatttctaagggtatgatacaactacaagatcacccaaaagaatttggtagggttgagaatttgacaaaaatt |
28990821 |
T |
|
| Q |
101 |
tgaggatttttgtacagatctacgctacaagagatgtttgagtattaggtttgaatcgagaagcgattttttgcagaaatcgaagaaaggaaaattgatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
28990822 |
tgaggatttttgtacagatctacgctacaagagatgtttgagtattaggtttgaatcgagaagcgatttgttgcagaaatcgaagaaaggaaaattgatt |
28990921 |
T |
|
| Q |
201 |
tgaagggttaggttgaaggcgctctatgtttcagtct |
237 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||| |
|
|
| T |
28990922 |
tgaagggttacggtgaaggcgctctatgtttcagtct |
28990958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 16 - 212
Target Start/End: Original strand, 29001176 - 29001387
Alignment:
| Q |
16 |
agaaaaatgtgaaatttctaagggtatgatacaactacaagatcacccaaaagaatttggtagggttgagaatttgagaaaaatttgaggatttttgtac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||| |||| ||||||||||||||| |
|
|
| T |
29001176 |
agaaaaatgtgaaatttctaagggtatgatacaactacaagatcacccaaaaaaattgggtagggttgaaaatttgaccaaaaagtgaggatttttgtac |
29001275 |
T |
|
| Q |
116 |
agatctacgctacaagagatgtttgag--------------tattagg-tttgaatcgagaagcgattttttgcagaaatcgaagaaaggaaaattgatt |
200 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||| ||||||||||| |||||||| ||| ||| |||||||| ||||||||||||| |
|
|
| T |
29001276 |
agatctacgctacaagaaatgtttgagggtttgattttgatgattaggttttgaatcgaggagcgatttgttgaagagatcgaagagaggaaaattgatt |
29001375 |
T |
|
| Q |
201 |
tgaagggttagg |
212 |
Q |
| |
|
|||||||||||| |
|
|
| T |
29001376 |
tgaagggttagg |
29001387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 212
Target Start/End: Original strand, 28977207 - 28977414
Alignment:
| Q |
16 |
agaaaaatgtgaaatttctaagggtatgatacaactacaagatcacccaaaagaatttggtagggttgagaatttgagaaaaatttgaggatttttgtac |
115 |
Q |
| |
|
||||||||||||||||||||| |||||||| | | || |||||||||| |||| ||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
28977207 |
agaaaaatgtgaaatttctaaaagtatgataaattgataa--tcacccaaaaaaattgggtagggttgagaatttgaccgaaaattgaggatttttgtac |
28977304 |
T |
|
| Q |
116 |
agatctacgctacaagagatg--------------tttgagtattaggtttgaatcgagaagcgattttttgcagaaatcgaagaaaggaaaattgattt |
201 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||||| |||| |||| ||| || ||||||||| |||||||||||||| |
|
|
| T |
28977305 |
agatctacgctacaagagatgtatgagggtttgattttgatgattaggtttgaatcgaaaagcaatttgttgaag-aatcgaagagaggaaaattgattt |
28977403 |
T |
|
| Q |
202 |
gaagggttagg |
212 |
Q |
| |
|
||||||||||| |
|
|
| T |
28977404 |
gaagggttagg |
28977414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1349 times since January 2019
Visitors: 4368