View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0717_low_16 (Length: 250)
Name: NF0717_low_16
Description: NF0717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0717_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 50101865 - 50101637
Alignment:
| Q |
1 |
cagagtgtttgtaacttgcccgaaccagttgctgttgagaatccaattgggattgatcccaatcttggtttgggatatgattttgctcagtttaacattg |
100 |
Q |
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| T |
50101865 |
cagagtgtttgtaactttcccgaaccagttgctgttgagaatccaattgggattgatcccaatcttggtttgggattggattttgctcggtttaacattg |
50101766 |
T |
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| Q |
101 |
atgattttggaccagattttgaagaatttggcgacataggtgacttcgaggatattcaagttcatggttttgatgacaatgaacctagtgagcttcctga |
200 |
Q |
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| T |
50101765 |
atgattttggaccagattttgaagaatttggcgacataggtgacttcgaggatattcaagttcatggttttgatgacaatgaacctagtgagcttcctga |
50101666 |
T |
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| Q |
201 |
ttttgattttggtgatattggtgatgatg |
229 |
Q |
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| T |
50101665 |
ttttgattttggtgatattggtgatgatg |
50101637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 3 - 229
Target Start/End: Complemental strand, 19398604 - 19398378
Alignment:
| Q |
3 |
gagtgtttgtaacttgcccgaaccagttgctgttgagaatccaattgggattgatcccaatcttggtttgggatatgattttgctcagtttaacattgat |
102 |
Q |
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| T |
19398604 |
gagtgtttttaacttgcctgagctagttgctgctgagaattcaattggcactgaccccaatcttggtttgggatttgatttagatcgatttaacattgat |
19398505 |
T |
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| Q |
103 |
gattttggaccagattttgaagaatttggcgacataggtgacttcgaggatattcaagttcatggttttgatgacaatgaacctagtgagcttcctgatt |
202 |
Q |
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| T |
19398504 |
gattttggatcagattttgaagaatttggtgacttaggtgactttgaggatattcaagttcatggttttgatgacaatgaacctagtgagcttcctgatt |
19398405 |
T |
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| Q |
203 |
ttgattttggtgatattggtgatgatg |
229 |
Q |
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| T |
19398404 |
ttgattttggtgatattggtgatgatg |
19398378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 36 - 229
Target Start/End: Original strand, 47425358 - 47425560
Alignment:
| Q |
36 |
tgagaatccaattgggattgatcccaatcttggtttgggatatgattttgctcagtttaacattgatgattttggaccagattttgaagaatttggcg-- |
133 |
Q |
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| T |
47425358 |
tgagaatccaattgggactgatcccaatcttggtttgggatttgattttgatcaatttaacattgatgattttggaaaagattttcaagaatttggtggc |
47425457 |
T |
|
| Q |
134 |
-------acataggtgacttcgaggatattcaagttcatggttttgatgacaatgaacctagtgagcttcctgattttgattttggtgatattggtgatg |
226 |
Q |
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| T |
47425458 |
tgtggtgacttaggtgacttcgaggatattcaaattcatggatttgatgacaatggacctagtgagcttcctgattttgattttggtgatattggtgatg |
47425557 |
T |
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| Q |
227 |
atg |
229 |
Q |
| |
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||| |
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| T |
47425558 |
atg |
47425560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 3 - 229
Target Start/End: Original strand, 8585356 - 8585591
Alignment:
| Q |
3 |
gagtgtttgtaacttgcccgaaccagttgctgttgagaatccaattgggattgatcccaatcttggtttgggatatgattttgctcagtttaacattgat |
102 |
Q |
| |
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|||||||| |||||||| || ||| ||||| ||||| ||||||||||| ||||||||||||| ||| |||| |||||||| || |||||||||||| |
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| T |
8585356 |
gagtgttttaaacttgcctgagccaactgctgctgagattccaattgggactgatcccaatctttgttctggatttgattttgatcggtttaacattgac |
8585455 |
T |
|
| Q |
103 |
gattttggaccagattttgaagaatttggcga---------cataggtgacttcgaggatattcaagttcatggttttgatgacaatgaacctagtgagc |
193 |
Q |
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||||||||||| |||||||| |||||||| || | ||||||||||| ||||||||||| | |||||||||||||||||||||||||| |||| |
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| T |
8585456 |
gattttggaccggattttgatgaatttggtgatttcgatgacttaggtgacttcaaggatattcaaatacatggttttgatgacaatgaacctagcgagc |
8585555 |
T |
|
| Q |
194 |
ttcctgattttgattttggtgatattggtgatgatg |
229 |
Q |
| |
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||||||||||||||||||| |||||||||| ||||| |
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| T |
8585556 |
ttcctgattttgattttggcgatattggtgttgatg |
8585591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 8602021 - 8602246
Alignment:
| Q |
13 |
aacttgcccgaaccagttgctgttgagaatccaattgggattgatcccaatcttggtttgggatatgattttgctcagtttaacattgatgattttggac |
112 |
Q |
| |
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|||||||| || ||| || ||| ||||||||||| ||| | |||||||||| ||||||| |||| |||||||| || ||||||||| || |||||||||| |
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| T |
8602021 |
aacttgcctgagccaattactgctgagaatccaactggaactgatcccaattttggttttggatttgattttgatcggtttaacatcgacgattttggac |
8602120 |
T |
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| Q |
113 |
cagattttgaagaatttggcgaca---------taggtgacttcgaggatattcaagttcatggttttgatgacaatgaacctagtgagcttcctgattt |
203 |
Q |
| |
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| |||||||| |||||||| ||| ||| ||||||| |||||||||| | ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
8602121 |
cggattttgatgaatttggtgactacggtgacttagttgacttcatggatattcaaatacatggttttgatgacaatgaaccaagtgagcttcctgattt |
8602220 |
T |
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| Q |
204 |
tgattttggtgatattggtgatgatg |
229 |
Q |
| |
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||||||||||||||| |||||||||| |
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| T |
8602221 |
tgattttggtgatatcggtgatgatg |
8602246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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