View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0717_low_2 (Length: 524)
Name: NF0717_low_2
Description: NF0717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0717_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 8 - 496
Target Start/End: Original strand, 49437264 - 49437750
Alignment:
| Q |
8 |
cgaataatatagagtgtatttacttgtactcaaaaaacagagctgtggaccgatgagctaaccaaggctaaaaaactattttaaaacataaggatctttc |
107 |
Q |
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| T |
49437264 |
cgaacaatatagagtgtattttcttgaactcaaaaaacagagctgtggaccgatgagctaaccaagggtaaaaaactattttaaaacataaagatctttc |
49437363 |
T |
|
| Q |
108 |
aaatggaagatcttattgagatagaattcaaagttgcatatgtgtagtttataaatgatcctaagactatacatgatcatcccctttgttttacctctaa |
207 |
Q |
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| T |
49437364 |
aaatggaagatcttattgagatagaattcaaagttgcatatgtgtagtttataaatgatcctaagactatacatgatcatcccctttgttttacctctaa |
49437463 |
T |
|
| Q |
208 |
caaatggataaagtcatacacaaggtcaacaaatttaattgaagtatgataaatggattcaacaaatttataaaccnnnnnnntggaaagttgtagactt |
307 |
Q |
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| T |
49437464 |
caaatggataaagtcatacacaaggtcaacaaatttaattgaagtatgataaatggattcaacaaatttataaacc-aaaaaatggaaagttgtagactt |
49437562 |
T |
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| Q |
308 |
aatttcggtaacaaacaagtttatnnnnnnntatgtctacaagtttacgggataatttttccttcacttgtgcaccaacacaaatttaatgacaatcaag |
407 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
49437563 |
aatttcggtaacaaacaagtttataaaaaaa-atgtctacaagtttacgggataatttttccttcacttgtgcaccaacacaaatttcatgacaatcaag |
49437661 |
T |
|
| Q |
408 |
gtttcacattacaaaccaacaaacctagcagctgcatcataaaagcaaattaaagtgaactgtctggggagaacctatatgcatttagt |
496 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49437662 |
gtttcacattacaaaccaacaaacctagcagctgcatcataaaagcaaattaaagtgaactgtctggggagaacctatatgcatttagt |
49437750 |
T |
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