View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0717_low_4 (Length: 446)
Name: NF0717_low_4
Description: NF0717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0717_low_4 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 6e-84; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 285 - 446
Target Start/End: Original strand, 43194670 - 43194831
Alignment:
| Q |
285 |
gcttacagtaacaggtctctcaggcaacttcacacaaaacgaacagttaagactcccatcaaagatatcgagaacaccacttctcctaacatgaacctca |
384 |
Q |
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| T |
43194670 |
gcttacagtaacaggtctctcaggcaacttcacacaaaacgaacagttaagactcccatcaaagatatcaagaacaccacttctcctaacatgaacctca |
43194769 |
T |
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| Q |
385 |
tccttctctttcaaagatccaccatgtaactcttggcgtttctttctcttctcttcctccgt |
446 |
Q |
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| T |
43194770 |
tccttctctttcaaagatccaccatgtaactcttggcgtttctttctcttctcttcctccgt |
43194831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 21 - 203
Target Start/End: Original strand, 43194408 - 43194590
Alignment:
| Q |
21 |
acatcatcatcaacaacaataacaactttcaatcacacnnnnnnnnnnnnnnnttaatttaataaaatcaaatatttaacacacttcaagtcaagattga |
120 |
Q |
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| T |
43194408 |
acatcatcatcaacaacaataacaactttcaatcacaaaaaaaaaaaaaaaaattaatttaataaaatcaaatatttaacacatatcaagtcaagattga |
43194507 |
T |
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| Q |
121 |
atcgttcagataacctaaccaaaacaaactcgattaggtcatcagaacgattcaatctcacaactaaaacacaatgtcactcc |
203 |
Q |
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| T |
43194508 |
atcgttcagataacctaaccaaaacaaactcgattaggtcatcagaacgattcaatctcacaactaaaacacaatgtcactcc |
43194590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 90 - 180
Target Start/End: Original strand, 43194305 - 43194395
Alignment:
| Q |
90 |
aaatatttaacacacttcaagtcaagattgaatcgttcagataacctaaccaaaacaaactcgattaggtcatcagaacgattcaatctca |
180 |
Q |
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| T |
43194305 |
aaatatttaacacatttcaagttaagattgaaccgttcaggtaacctaaccaaaacaaactaagttaagtcacctgaacgattcaatctca |
43194395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 353
Target Start/End: Complemental strand, 43193844 - 43193780
Alignment:
| Q |
289 |
acagtaacaggtctctcaggcaacttcacacaaaacgaacagttaagactcccatcaaagatatc |
353 |
Q |
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| T |
43193844 |
acagtaacaggtctctcaggcaactggatgcagaaggaacagttaaggctaccatcgaagatatc |
43193780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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