View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0717_low_5 (Length: 404)

Name: NF0717_low_5
Description: NF0717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0717_low_5
NF0717_low_5
[»] chr1 (27 HSPs)
chr1 (32-380)||(41574306-41574651)
chr1 (121-352)||(43021770-43022000)
chr1 (299-380)||(34528926-34529008)
chr1 (237-370)||(12629266-12629397)
chr1 (107-214)||(19088674-19088781)
chr1 (244-380)||(28015933-28016067)
chr1 (237-373)||(19100216-19100348)
chr1 (237-373)||(32943681-32943814)
chr1 (298-362)||(907684-907749)
chr1 (298-362)||(18332726-18332790)
chr1 (237-362)||(34507895-34508017)
chr1 (298-380)||(10423808-10423891)
chr1 (311-380)||(16816241-16816311)
chr1 (322-388)||(19054383-19054451)
chr1 (100-380)||(10032095-10032372)
chr1 (298-379)||(42264406-42264488)
chr1 (311-362)||(13309404-13309456)
chr1 (311-362)||(21487861-21487913)
chr1 (311-362)||(27035877-27035929)
chr1 (298-368)||(31893101-31893173)
chr1 (318-364)||(41917086-41917133)
chr1 (311-380)||(19088875-19088945)
chr1 (312-380)||(10433199-10433268)
chr1 (298-368)||(3833445-3833517)
chr1 (311-362)||(17122830-17122882)
chr1 (319-362)||(21813172-21813216)
chr1 (305-380)||(34517674-34517750)
[»] scaffold0176 (1 HSPs)
scaffold0176 (114-373)||(26260-26515)
[»] chr7 (20 HSPs)
chr7 (135-380)||(1633130-1633375)
chr7 (302-380)||(1537965-1538044)
chr7 (311-362)||(1862352-1862404)
chr7 (311-386)||(14073790-14073866)
chr7 (311-386)||(14383818-14383894)
chr7 (298-362)||(4463455-4463521)
chr7 (311-362)||(980920-980972)
chr7 (298-368)||(28937335-28937407)
chr7 (314-380)||(12163399-12163466)
chr7 (298-362)||(22849549-22849614)
chr7 (96-160)||(1538149-1538213)
chr7 (298-368)||(4407428-4407500)
chr7 (298-337)||(9411264-9411303)
chr7 (314-364)||(20382337-20382388)
chr7 (311-380)||(3399558-3399628)
chr7 (311-380)||(10996375-10996445)
chr7 (298-362)||(11295395-11295461)
chr7 (311-380)||(28780182-28780252)
chr7 (311-379)||(23050630-23050699)
chr7 (314-362)||(38993122-38993171)
[»] chr6 (34 HSPs)
chr6 (237-373)||(31633596-31633730)
chr6 (237-373)||(33325857-33325989)
chr6 (298-362)||(9351149-9351214)
chr6 (106-352)||(8212290-8212536)
chr6 (298-380)||(14641424-14641507)
chr6 (298-380)||(20898950-20899033)
chr6 (311-370)||(11650840-11650900)
chr6 (314-362)||(24373519-24373568)
chr6 (112-197)||(26592706-26592791)
chr6 (305-380)||(14372193-14372269)
chr6 (101-197)||(14641224-14641320)
chr6 (298-362)||(18306753-18306817)
chr6 (325-380)||(24617740-24617796)
chr6 (311-362)||(26522726-26522778)
chr6 (313-380)||(34338101-34338169)
chr6 (314-380)||(13575005-13575072)
chr6 (314-380)||(13577544-13577611)
chr6 (314-380)||(15141911-15141978)
chr6 (98-141)||(15952152-15952195)
chr6 (315-380)||(11319474-11319540)
chr6 (314-362)||(12435958-12436007)
chr6 (306-362)||(26592547-26592604)
chr6 (311-362)||(3056938-3056990)
chr6 (298-373)||(17112237-17112313)
chr6 (315-362)||(20589638-20589686)
chr6 (311-362)||(24127849-24127901)
chr6 (298-380)||(13565901-13565984)
chr6 (311-370)||(841321-841382)
chr6 (298-362)||(9696883-9696948)
chr6 (298-362)||(14982378-14982443)
chr6 (311-378)||(1448791-1448859)
chr6 (340-380)||(8483639-8483679)
chr6 (311-362)||(10138872-10138924)
chr6 (315-362)||(27962068-27962116)
[»] chr8 (24 HSPs)
chr8 (235-373)||(29250257-29250395)
chr8 (298-380)||(16290844-16290927)
chr8 (314-380)||(24317404-24317470)
chr8 (298-380)||(24184758-24184841)
chr8 (298-362)||(26867446-26867511)
chr8 (298-362)||(29840849-29840914)
chr8 (305-380)||(26657662-26657738)
chr8 (311-362)||(23595378-23595430)
chr8 (311-362)||(23604300-23604352)
chr8 (314-364)||(40263679-40263730)
chr8 (311-380)||(44348-44418)
chr8 (298-357)||(10568330-10568391)
chr8 (298-362)||(16889962-16890027)
chr8 (305-380)||(17274705-17274781)
chr8 (311-362)||(43856119-43856171)
chr8 (311-349)||(16043680-16043719)
chr8 (311-369)||(21499360-21499419)
chr8 (312-362)||(26393367-26393418)
chr8 (298-362)||(15234787-15234852)
chr8 (324-380)||(18036823-18036880)
chr8 (298-356)||(16325651-16325708)
chr8 (311-362)||(21593184-21593236)
chr8 (154-198)||(26867301-26867345)
chr8 (244-284)||(29233298-29233338)
[»] scaffold0911 (1 HSPs)
scaffold0911 (298-380)||(2226-2309)
[»] scaffold0012 (2 HSPs)
scaffold0012 (237-373)||(52640-52773)
scaffold0012 (305-380)||(103701-103777)
[»] chr4 (13 HSPs)
chr4 (298-380)||(11415982-11416065)
chr4 (299-362)||(23795451-23795515)
chr4 (298-362)||(33040599-33040664)
chr4 (298-373)||(25219641-25219717)
chr4 (298-380)||(8667105-8667187)
chr4 (305-380)||(44673682-44673758)
chr4 (311-357)||(39406847-39406894)
chr4 (311-362)||(11485222-11485274)
chr4 (340-380)||(34657920-34657960)
chr4 (313-379)||(15159407-15159474)
chr4 (313-362)||(18234245-18234295)
chr4 (302-362)||(6192577-6192638)
chr4 (319-362)||(1924679-1924723)
[»] chr2 (23 HSPs)
chr2 (302-373)||(40926475-40926547)
chr2 (298-371)||(24297329-24297403)
chr2 (306-373)||(17151291-17151359)
chr2 (314-380)||(28522856-28522923)
chr2 (298-371)||(24270833-24270907)
chr2 (305-362)||(36802290-36802348)
chr2 (317-380)||(13619101-13619165)
chr2 (305-362)||(20477420-20477478)
chr2 (298-373)||(21565846-21565922)
chr2 (298-356)||(17377537-17377596)
chr2 (311-364)||(22169989-22170043)
chr2 (324-362)||(24440003-24440041)
chr2 (314-362)||(1490658-1490707)
chr2 (298-369)||(28948858-28948931)
chr2 (298-362)||(38242160-38242225)
chr2 (319-362)||(17679739-17679783)
chr2 (315-362)||(20386645-20386693)
chr2 (311-362)||(20434207-20434259)
chr2 (315-362)||(24524101-24524149)
chr2 (315-362)||(26916633-26916681)
chr2 (298-368)||(32234445-32234517)
chr2 (311-362)||(34454891-34454943)
chr2 (246-286)||(40926558-40926598)
[»] scaffold0195 (2 HSPs)
scaffold0195 (298-373)||(9001-9076)
scaffold0195 (298-373)||(14390-14465)
[»] chr3 (17 HSPs)
chr3 (298-380)||(26953958-26954041)
chr3 (306-380)||(1051324-1051399)
chr3 (298-380)||(25760008-25760091)
chr3 (237-362)||(40790597-40790718)
chr3 (298-380)||(51661668-51661751)
chr3 (311-362)||(16309690-16309742)
chr3 (311-362)||(18490684-18490736)
chr3 (298-380)||(18517666-18517749)
chr3 (301-362)||(16037948-16038010)
chr3 (305-362)||(26430252-26430310)
chr3 (299-371)||(10997416-10997489)
chr3 (319-362)||(2899938-2899982)
chr3 (311-362)||(19826437-19826489)
chr3 (322-380)||(10623242-10623301)
chr3 (305-362)||(16041497-16041555)
chr3 (106-199)||(1051506-1051599)
chr3 (315-362)||(47165911-47165959)
[»] chr5 (17 HSPs)
chr5 (311-380)||(2259404-2259474)
chr5 (298-380)||(21711545-21711628)
chr5 (298-362)||(19068719-19068784)
chr5 (317-380)||(15614744-15614808)
chr5 (298-380)||(4120507-4120590)
chr5 (311-362)||(21027041-21027093)
chr5 (112-195)||(4120302-4120385)
chr5 (112-197)||(21711733-21711819)
chr5 (311-380)||(24765508-24765578)
chr5 (298-362)||(34995474-34995539)
chr5 (298-362)||(35341877-35341941)
chr5 (311-362)||(5781105-5781157)
chr5 (311-362)||(11725649-11725701)
chr5 (319-362)||(21877926-21877970)
chr5 (315-362)||(28682782-28682830)
chr5 (298-338)||(32038470-32038510)
chr5 (311-362)||(39324371-39324423)
[»] scaffold0437 (3 HSPs)
scaffold0437 (298-380)||(11402-11485)
scaffold0437 (311-362)||(14355-14407)
scaffold0437 (96-197)||(11195-11296)
[»] scaffold0068 (2 HSPs)
scaffold0068 (298-380)||(2282-2365)
scaffold0068 (112-197)||(2091-2177)
[»] scaffold0009 (1 HSPs)
scaffold0009 (298-380)||(1501-1584)
[»] scaffold0013 (1 HSPs)
scaffold0013 (300-362)||(100967-101029)
[»] scaffold0291 (2 HSPs)
scaffold0291 (298-370)||(15567-15640)
scaffold0291 (315-362)||(21899-21947)
[»] scaffold0045 (1 HSPs)
scaffold0045 (317-380)||(80342-80406)
[»] scaffold0886 (1 HSPs)
scaffold0886 (311-380)||(2783-2853)
[»] scaffold0123 (1 HSPs)
scaffold0123 (302-371)||(29985-30055)
[»] scaffold0029 (1 HSPs)
scaffold0029 (298-362)||(129409-129474)
[»] scaffold0002 (1 HSPs)
scaffold0002 (298-362)||(307226-307291)
[»] scaffold0607 (1 HSPs)
scaffold0607 (311-357)||(337-384)
[»] scaffold0166 (1 HSPs)
scaffold0166 (311-380)||(8005-8075)
[»] scaffold1667 (1 HSPs)
scaffold1667 (298-362)||(728-792)
[»] scaffold0044 (1 HSPs)
scaffold0044 (298-362)||(20847-20911)
[»] scaffold0265 (1 HSPs)
scaffold0265 (319-362)||(19593-19637)
[»] scaffold0238 (1 HSPs)
scaffold0238 (315-362)||(4444-4492)
[»] scaffold0196 (1 HSPs)
scaffold0196 (340-380)||(795-835)
[»] scaffold0134 (1 HSPs)
scaffold0134 (315-362)||(2486-2534)
[»] scaffold0006 (1 HSPs)
scaffold0006 (305-380)||(36679-36755)


Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 32 - 380
Target Start/End: Complemental strand, 41574651 - 41574306
Alignment:
Q  32 agaaaacctccttcccaatgaatactctattggaatgtttgagtattgaagtttcgagttgttatcacgccattcagggttctgtttggttagattcgct 131  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  41574651 agaaaacctcattcccaatgaatactctattggaatgtttgagtattgaagtttcaagttgttatcacgccattcagggttctctttggttagattcgct 41574552  T
Q  132 tctgacggagctgcacctggacttctttcgtgatagacttggtttgcgtaactacaggtttccttaggtctctgtagtctgctttaacattatttttgtt 231  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||| |||||||||||||||||||    
T  41574551 tctgacggagctgcacttggacttctttcgtgatagacttggtttgcctaattacaggtttctttaggtctctgtagtctactttaacattatttttgtt 41574452  T
Q  232 ttctgtcttctcagggttttggccttgtccgccctcttcttgtatatatttttccnnnnnnnnnnnaataaaattttaaagtttggcggcataggatgga 331  Q
    ||||||||||| | |||||||| || |||||||||||||||||||||||||||||           |||||||||||| |||||||||||||||||||||    
T  41574451 ttctgtcttctgaaggttttggtctagtccgccctcttcttgtatatatttttcc---ttttttttaataaaattttagagtttggcggcataggatgga 41574355  T
Q  332 ggtttccagggtgccaacctagttgggatgttggtgtttccttttgatg 380  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  41574354 ggtttccagggtgtcaacctagttgggatgttggtgtttccttttgatg 41574306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 121 - 352
Target Start/End: Complemental strand, 43022000 - 43021770
Alignment:
Q  121 ttagattcgcttctgacggagctgcacctggacttctttcgtgatagacttggtttgcgtaactacaggtttccttaggtctctgtagtctgctttaaca 220  Q
    ||||||||| ||| ||||||||| ||| |||||||||||||||||||| ||||||||| |||||||| |||||||||||||||| |||||||||||| ||    
T  43022000 ttagattcgtttccgacggagctacacttggacttctttcgtgatagagttggtttgcctaactacaagtttccttaggtctctatagtctgctttagca 43021901  T
Q  221 ttatttttgttttctgtcttctcagggttttggccttgtccgccctcttcttgtatatatttttccnnnnnnnnnnnaataaaattttaaagtttggcgg 320  Q
    || ||||||||||||||||| | ||| ||||||||| |||| |||||||| ||||||||||||| |           |||||||||||| ||||||||||    
T  43021900 ttctttttgttttctgtcttatgaggattttggcctagtcccccctcttcctgtatatattttttc---ccccttttaataaaattttagagtttggcgg 43021804  T
Q  321 cataggatggaggttt--ccagggtgccaaccta 352  Q
    ||||||||||||||||  || |||||||||||||    
T  43021803 cataggatggaggtttccccggggtgccaaccta 43021770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 299 - 380
Target Start/End: Complemental strand, 34529008 - 34528926
Alignment:
Q  299 ataaaattttaaagtttggcggcataggatggaggttt-ccagggtgccaacctagttgggatgttggtgtttccttttgatg 380  Q
    ||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||| | |||||||| ||||||    
T  34529008 ataaaattttagagtttggcggcataggatggaggtttcccggggtgccaacctagttgggatgtcgctgtttcctcttgatg 34528926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 237 - 370
Target Start/End: Complemental strand, 12629397 - 12629266
Alignment:
Q  237 tcttctcagggttttggccttgtccgccctcttcttgtatatatttttccnnnnnnnnnnnaataaaattttaaagtttggcggcataggatggaggttt 336  Q
    |||||| |||||||||||||  ||| |||||||||||||||||||||||            |||||||||||| ||||||||||||||||| ||||||||    
T  12629397 tcttctgagggttttggcctaatcccccctcttcttgtatatatttttc---tttttttttaataaaattttagagtttggcggcataggacggaggttt 12629301  T
Q  337 ccaggg-tgccaacctagttgggatgttggtgttt 370  Q
    || ||| |||||| ||||||||||||| |||||||    
T  12629300 cccgggatgccaatctagttgggatgtcggtgttt 12629266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 107 - 214
Target Start/End: Original strand, 19088674 - 19088781
Alignment:
Q  107 agggttctgtttggttagattcgcttctgacggagctgcacctggacttctttcgtgatagacttggtttgcgtaactacaggtttccttaggtctctgt 206  Q
    |||||||||||||||||||| || | | |||| || |||| || || ||||||||||||||| | ||| ||| ||||||||||||||||||||||  |||    
T  19088674 agggttctgtttggttagatacgttaccgacgaagttgcatcttgatttctttcgtgatagagtaggtctgcctaactacaggtttccttaggtccatgt 19088773  T
Q  207 agtctgct 214  Q
    ||||||||    
T  19088774 agtctgct 19088781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 244 - 380
Target Start/End: Original strand, 28015933 - 28016067
Alignment:
Q  244 agggttttggccttgtccgccctcttcttgtatatatttttccnnnnnnnnnnnaataaaattttaaagtttggcggcataggatggaggtttcc-aggg 342  Q
    ||||||||||||| |||| ||||||||||||||||||||||||           |||||||||||| |||||||||| |||||| |||| |||||  |||    
T  28015933 agggttttggcctagtcccccctcttcttgtatatatttttcccttttttt---aataaaattttatagtttggcggaataggacggagatttcctgggg 28016029  T
Q  343 tgccaacctagttgggatgttggtgtttccttttgatg 380  Q
    || |||| |||||||||||| ||||||||||| |||||    
T  28016030 tgtcaacttagttgggatgtcggtgtttccttctgatg 28016067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 237 - 373
Target Start/End: Original strand, 19100216 - 19100348
Alignment:
Q  237 tcttctcagggttttggccttgtccgccctcttcttgtatatatttttccnnnnnnnnnnnaataaaattttaaagtttggcggcataggatggaggttt 336  Q
    |||||| ||||||||||||| || | ||||||||||||||||||||||||           |||||||||||| |||||| |||||||||| || |||||    
T  19100216 tcttctgagggttttggcctagttccccctcttcttgtatatatttttccttttttt----aataaaattttagagtttgacggcataggacggtggttt 19100311  T
Q  337 ccagggtgccaacctagttgggatgttggtgtttcct 373  Q
    || || ||||||||||||||| |||| | ||||||||    
T  19100312 cccggatgccaacctagttggtatgtcgatgtttcct 19100348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 237 - 373
Target Start/End: Original strand, 32943681 - 32943814
Alignment:
Q  237 tcttctcagggttttggccttgtccgccctcttcttgtatatatttttccnnnnnnnnnnnaataaaattttaaagtttggcggcataggatggaggttt 336  Q
    |||||| ||||||||||||| |||| ||||||||||||||||||||||||           |||||| ||||  |||||||||||||| || ||||||||    
T  32943681 tcttctgagggttttggcctagtcccccctcttcttgtatatatttttcc---ttttttttaataaattttttgagtttggcggcataagacggaggttt 32943777  T
Q  337 ccagggtgccaacctagttgggatgttggtgtttcct 373  Q
    || || |||||||||| |||| |||| ||||||||||    
T  32943778 cccggatgccaacctaattggtatgtcggtgtttcct 32943814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 298 - 362
Target Start/End: Complemental strand, 907749 - 907684
Alignment:
Q  298 aataaaattttaaagtttggcggcataggatggaggtttc-cagggtgccaacctagttgggatgt 362  Q
    |||||| ||||| |||||||||||||||||||||||| || ||||||||||| |||||||||||||    
T  907749 aataaatttttagagtttggcggcataggatggaggtctctcagggtgccaatctagttgggatgt 907684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 298 - 362
Target Start/End: Complemental strand, 18332790 - 18332726
Alignment:
Q  298 aataaaattttaaagtttggcggcataggatggaggtt-tccagggtgccaacctagttgggatgt 362  Q
    ||||||||||| | |||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  18332790 aataaaattttga-gtttggcggcataggatggaggttctccggggtgccaacctagttgggatgt 18332726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 237 - 362
Target Start/End: Complemental strand, 34508017 - 34507895
Alignment:
Q  237 tcttctcagggttttggccttgtccgccc-tcttcttgtatatatttttccnnnnnnnnnnnaataaaattttaaagtttggcggcataggatggaggtt 335  Q
    |||||| ||||||||||||| |||| ||| |||||||||||||||||||||           |||||||||||| |||||||| |||||||| |||||||    
T  34508017 tcttctgagggttttggcctagtccccccctcttcttgtatatatttttccttttttt----aataaaattttagagtttggctgcataggacggaggtt 34507922  T
Q  336 tccagggtgccaacctagttgggatgt 362  Q
    ||| |  ||||||||||||||| ||||    
T  34507921 tcccgaatgccaacctagttggtatgt 34507895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 298 - 380
Target Start/End: Complemental strand, 10423891 - 10423808
Alignment:
Q  298 aataaaattttaaagtttggcggcataggatggaggtttc-cagggtgccaacctagttgggatgttggtgtttccttttgatg 380  Q
    |||||||||||| ||||||  |||||| |||||||||||| | ||||||||||||||||||||||| | |||| ||| ||||||    
T  10423891 aataaaattttagagtttgagggcataagatggaggtttctcggggtgccaacctagttgggatgtcgatgttgcctcttgatg 10423808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 311 - 380
Target Start/End: Complemental strand, 16816311 - 16816241
Alignment:
Q  311 agtttggcggcataggatggaggtttccag-ggtgccaacctagttgggatgttggtgtttccttttgatg 380  Q
    |||||| | |||||||||||||||| || | || |||||||||||||||||||||||||||||| ||||||    
T  16816311 agtttgactgcataggatggaggttccccgaggcgccaacctagttgggatgttggtgtttcctcttgatg 16816241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 322 - 388
Target Start/End: Complemental strand, 19054451 - 19054383
Alignment:
Q  322 ataggatggaggtttccaggg-tgccaacctagttgggatgttggtgtttccttttgatg-atgtccat 388  Q
    |||||||||||||| || ||| |||||||||||||||||||| |||||||||| |||||| ||||||||    
T  19054451 ataggatggaggttccccggggtgccaacctagttgggatgtcggtgtttcctcttgatgcatgtccat 19054383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 100 - 380
Target Start/End: Complemental strand, 10032372 - 10032095
Alignment:
Q  100 gccattcagggttctgtttggttagattcgcttctgacggagctgcacctggacttctttcgtgatagacttggtttgcgtaactacaggtttccttagg 199  Q
    |||||| |||||||||||||||||||  |||||  ||| ||| | ||  |||| |||||| |||| | | ||||||||| ||||||||||||||||||      
T  10032372 gccatttagggttctgtttggttagacacgctttcgacagaggtccatatggatttcttttgtgacaaagttggtttgcctaactacaggtttcctta-c 10032274  T
Q  200 tct-ctgtagtctgctttaacattattt----ttgttttctgtcttctcagggttttggccttgtccgccctcttcttgtatatatttttccnnnnnnnn 294  Q
    |||  ||||||||| ||  |  ||||||    || |||  | |||||  ||||||||||||| |||| ||||||||||||| ||||||||||            
T  10032273 tctgttgtagtctgtttgcattttattttttattttttattttcttccgagggttttggcctagtcccccctcttcttgtacatatttttcc-------t 10032181  T
Q  295 nnnaataaaattttaaagtttggcggcataggatggag-gtttccagggtgccaacctagttgggatgttggtgtttccttttgatg 380  Q
       ||||| |||||| || |||||||||||||||| ||  ||||| ||||  ||||||||||||||||| |||||||||| ||||||    
T  10032180 tttaataatattttagag-ttggcggcataggatgaagtttttccggggtatcaacctagttgggatgtcggtgtttcctcttgatg 10032095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 298 - 379
Target Start/End: Original strand, 42264406 - 42264488
Alignment:
Q  298 aataaaattttaaagtttggcggcataggatggaggtttc-cagggtgccaacctagttgggatgttggtgtttccttttgat 379  Q
    |||||||||||| |||||||||| ||| |||||||||||| | || | |||||||||||||  ||| | ||||||||||||||    
T  42264406 aataaaattttagagtttggcggtatatgatggaggtttctcgggataccaacctagttggtttgtcgatgtttccttttgat 42264488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 362
Target Start/End: Complemental strand, 13309456 - 13309404
Alignment:
Q  311 agtttggcggcataggatggaggtttc-cagggtgccaacctagttgggatgt 362  Q
    ||||||||||| |||||||||||| || | |||||||||||||||||||||||    
T  13309456 agtttggcggcttaggatggaggtctctcggggtgccaacctagttgggatgt 13309404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 362
Target Start/End: Complemental strand, 21487913 - 21487861
Alignment:
Q  311 agtttggcggcataggatggaggtt-tccagggtgccaacctagttgggatgt 362  Q
    |||||||||||||||||||| |||| | | |||||||||||||||||||||||    
T  21487913 agtttggcggcataggatgggggttcttcggggtgccaacctagttgggatgt 21487861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 362
Target Start/End: Complemental strand, 27035929 - 27035877
Alignment:
Q  311 agtttggcggcataggatggaggtttc-cagggtgccaacctagttgggatgt 362  Q
    |||||||||||||||||||||||| || | || ||||||||||||||||||||    
T  27035929 agtttggcggcataggatggaggtctctcgggatgccaacctagttgggatgt 27035877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 368
Target Start/End: Original strand, 31893101 - 31893173
Alignment:
Q  298 aataaaattttaaagtttggcgg-cataggatggaggtttccaggg-tgccaacctagttgggatgttggtgt 368  Q
    |||||||||||| |||||| ||| ||||||||||||| |||  ||| |||||||||||||||||||| |||||    
T  31893101 aataaaattttagagtttgacgggcataggatggaggcttctcgggatgccaacctagttgggatgtcggtgt 31893173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 318 - 364
Target Start/End: Original strand, 41917086 - 41917133
Alignment:
Q  318 cggcataggatggaggtt-tccagggtgccaacctagttgggatgttg 364  Q
    ||||||||||||| |||| ||| |||||||||||||||||||||||||    
T  41917086 cggcataggatgggggttctccggggtgccaacctagttgggatgttg 41917133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 380
Target Start/End: Original strand, 19088875 - 19088945
Alignment:
Q  311 agtttggcggcataggatggaggttt-ccagggtgccaacctagttgggatgttggtgtttccttttgatg 380  Q
    |||||||||||||| ||||||||||| ||| ||| |||||||| ||| |||||  ||||||||| ||||||    
T  19088875 agtttggcggcataagatggaggtttcccaaggttccaacctaattgagatgtcagtgtttcctcttgatg 19088945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 380
Target Start/End: Original strand, 10433199 - 10433268
Alignment:
Q  312 gtttggcggcataggatggaggtt-tccagggtgccaacctagttgggatgttggtgtttccttttgatg 380  Q
    ||||||| ||||| |||||||||| |||  ||||| |||||||||||||||| |||| ||||| ||||||    
T  10433199 gtttggcagcatatgatggaggttctccgaggtgcaaacctagttgggatgtcggtgcttcctcttgatg 10433268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 368
Target Start/End: Complemental strand, 3833517 - 3833445
Alignment:
Q  298 aataaaattttaaagtttggcgg-cataggatggaggtttccaggg-tgccaacctagttgggatgttggtgt 368  Q
    |||||||||||| |||| | ||| ||||||| ||||| |||| ||| |||||||||||||||||||| |||||    
T  3833517 aataaaattttagagttagacgggcataggacggaggcttcccggggtgccaacctagttgggatgtcggtgt 3833445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 362
Target Start/End: Original strand, 17122830 - 17122882
Alignment:
Q  311 agtttggcggcataggatggaggtt-tccagggtgccaacctagttgggatgt 362  Q
    |||||||||||||||||||  |||| | | |||||||||||||||||||||||    
T  17122830 agtttggcggcataggatgagggttctgcggggtgccaacctagttgggatgt 17122882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 21813172 - 21813216
Alignment:
Q  319 ggcataggatggaggtttc-cagggtgccaacctagttgggatgt 362  Q
    |||||||||||||||| || | |||||||||||||||||||||||    
T  21813172 ggcataggatggaggtgtctcggggtgccaacctagttgggatgt 21813216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 380
Target Start/End: Original strand, 34517674 - 34517750
Alignment:
Q  305 ttttaaagtttggcggcataggatggaggtttc-cagggtgccaacctagttgggatgttggtgtttccttttgatg 380  Q
    ||||| |||||||| |||||||||||||||||| | || |||||||||  ||||||||| | |||||| | ||||||    
T  34517674 ttttagagtttggcagcataggatggaggtttctcgggatgccaaccttattgggatgtcgatgtttcttcttgatg 34517750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 114 - 373
Target Start/End: Original strand, 26260 - 26515
Alignment:
Q  114 tgtttggttagattcgcttctgacggagctgcacctggacttctttcgtgatagacttggtttgcgtaactacaggtttccttaggtctctgtagtctgc 213  Q
    ||||||||||||| |||||| ||||||| ||||||| || ||||||||||||||| |||| |||| ||||||||||||||||||| || |  |||| |||    
T  26260 tgtttggttagatacgcttccgacggagttgcacctagatttctttcgtgatagagttggcttgcctaactacaggtttccttagttcacaatagtttgc 26359  T
Q  214 tttaacattatttttgttttctgtcttctcagggttttggccttgtccgccctcttcttgtatatatttttccnnnnnnnnnnnaataaaattttaaagt 313  Q
     || |  ||||||||||||  | |||||| ||||||||||||| |||| |||||||||||||||| |||||||            |||| |||||| |||    
T  26360 -ttcagtttatttttgtttattttcttctgagggttttggcctagtcccccctcttcttgtatatctttttcccattttttg---ataatattttagagt 26455  T
Q  314 ttggcggcataggatggaggtttccaggg-tgccaacctagttgggatgttggtgtttcct 373  Q
    ||| ||| ||||||||||||||||| ||| ||||||||||  |||||||||||||||||||    
T  26456 ttgacggtataggatggaggtttcccgggatgccaaccta-atgggatgttggtgtttcct 26515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 5e-32; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 135 - 380
Target Start/End: Original strand, 1633130 - 1633375
Alignment:
Q  135 gacggagctgcacctggacttctttcgtgatagacttggtttgcgtaactacaggtttccttaggtctctgtagtctgctttaacattatttttgttttc 234  Q
    |||| |||||||| |||| ||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||| ||  ||||   |||||    
T  1633130 gacgaagctgcacttggatttctttcgtgatagagttggtttgcctaactacaggttttcttaggtctctgtagtctgctttagca--attt---ttttc 1633224  T
Q  235 tgtcttctcagggttttggccttgtc------cgccctcttcttgtatatatttttccnnnnnnnnnnnaataaaattttaaagtttggcggcataggat 328  Q
    |||||||| |||||||| |||| | |      | ||||||| ||||||||| ||||||           |||||||||||| ||||||||||||||||||    
T  1633225 tgtcttctgagggttttagcctagccccccctccccctctttttgtatatacttttcc--cccttttttaataaaattttagagtttggcggcataggat 1633322  T
Q  329 ggaggtttc-cagggtgccaacctagttgggatgttggtgtttccttttgatg 380  Q
     |||||||| | ||||| ||||||||||||  ||| |||||||||| ||||||    
T  1633323 tgaggtttctcggggtgtcaacctagttggattgtcggtgtttcctcttgatg 1633375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 302 - 380
Target Start/End: Complemental strand, 1538044 - 1537965
Alignment:
Q  302 aaattttaaagtttggcggcataggatggaggttt-ccagggtgccaacctagttgggatgttggtgtttccttttgatg 380  Q
    |||||||| |||||||||||||||||||||||||| ||  |||| ||||||||||||||||| |||||||||| ||||||    
T  1538044 aaattttagagtttggcggcataggatggaggtttccctaggtggcaacctagttgggatgtcggtgtttcctcttgatg 1537965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 311 - 362
Target Start/End: Complemental strand, 1862404 - 1862352
Alignment:
Q  311 agtttggcggcataggatggaggtt-tccagggtgccaacctagttgggatgt 362  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  1862404 agtttggcggcataggatggaggttctccggggtgccaacctagttgggatgt 1862352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 311 - 386
Target Start/End: Original strand, 14073790 - 14073866
Alignment:
Q  311 agtttggcggcataggatggaggtttc-cagggtgccaacctagttgggatgttggtgtttccttttgatgatgtcc 386  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| | || | |||| ||| |||||| |||||    
T  14073790 agtttggcggcataggatggaggtttctcagggtgccaacctagttggtaagtcgatgttgcctcttgatgctgtcc 14073866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 311 - 386
Target Start/End: Original strand, 14383818 - 14383894
Alignment:
Q  311 agtttggcggcataggatggaggtttc-cagggtgccaacctagttgggatgttggtgtttccttttgatgatgtcc 386  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| | || | |||| ||| |||||| |||||    
T  14383818 agtttggcggcataggatggaggtttctcagggtgccaacctagttggtaagtcgatgttgcctcttgatgctgtcc 14383894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 298 - 362
Target Start/End: Complemental strand, 4463521 - 4463455
Alignment:
Q  298 aataaaattttaaagtttggcgg-cataggatggaggtttccaggg-tgccaacctagttgggatgt 362  Q
    |||||||||||| |||||||||| ||||||||||||| |||| ||| ||||||||||||||||||||    
T  4463521 aataaaattttagagtttggcgggcataggatggaggcttcctggggtgccaacctagttgggatgt 4463455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 311 - 362
Target Start/End: Original strand, 980920 - 980972
Alignment:
Q  311 agtttggcggcataggatggaggtt-tccagggtgccaacctagttgggatgt 362  Q
    ||||||||||||||||||||||||| ||| | |||||||||||||||||||||    
T  980920 agtttggcggcataggatggaggttctccggagtgccaacctagttgggatgt 980972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 298 - 368
Target Start/End: Original strand, 28937335 - 28937407
Alignment:
Q  298 aataaaattttaaagtttggcgg-cataggatggagg-tttccagggtgccaacctagttgggatgttggtgt 368  Q
    |||||||||||| |||||| ||| ||||||||||||| ||||| || |||||||||||||||||||| |||||    
T  28937335 aataaaattttagagtttgacgggcataggatggaggctttccgggatgccaacctagttgggatgtcggtgt 28937407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 314 - 380
Target Start/End: Original strand, 12163399 - 12163466
Alignment:
Q  314 ttggcggcataggatggaggtttccag-ggtgccaacctagttgggatgttggtgtttccttttgatg 380  Q
    ||||||||| | ||||||||||||| | |||||||||||||||||||||| |||||| ||| ||||||    
T  12163399 ttggcggcagacgatggaggtttcccgaggtgccaacctagttgggatgtcggtgttgcctcttgatg 12163466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 298 - 362
Target Start/End: Complemental strand, 22849614 - 22849549
Alignment:
Q  298 aataaaattttaaagtttggcggcataggatggaggtttc-cagggtgccaacctagttgggatgt 362  Q
    |||||| ||||  |||||||||||||||||| ||||| || | |||||||||||||||||||||||    
T  22849614 aataaattttttgagtttggcggcataggatagaggtatctcggggtgccaacctagttgggatgt 22849549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 160
Target Start/End: Complemental strand, 1538213 - 1538149
Alignment:
Q  96 tcacgccattcagggttctgtttggttagattcgcttctgacggagctgcacctggacttctttc 160  Q
    |||| |||||||||||||||||||||||||  |||||| ||||||| ||||  |||| |||||||    
T  1538213 tcacaccattcagggttctgtttggttagacacgcttccgacggagttgcatatggatttctttc 1538149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 368
Target Start/End: Complemental strand, 4407500 - 4407428
Alignment:
Q  298 aataaaattttaaagtttggcgg-cataggatggagg-tttccagggtgccaacctagttgggatgttggtgt 368  Q
    |||||||||||| |||||| ||| ||||||| ||||| ||||  ||||||||||||||||||||||| |||||    
T  4407500 aataaaattttagagtttgacgggcataggacggaggctttctggggtgccaacctagttgggatgtcggtgt 4407428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 298 - 337
Target Start/End: Complemental strand, 9411303 - 9411264
Alignment:
Q  298 aataaaattttaaagtttggcggcataggatggaggtttc 337  Q
    ||||| |||||| |||||||||||||||||||||||||||    
T  9411303 aataatattttagagtttggcggcataggatggaggtttc 9411264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 314 - 364
Target Start/End: Original strand, 20382337 - 20382388
Alignment:
Q  314 ttggcggcataggatggaggtt-tccagggtgccaacctagttgggatgttg 364  Q
    ||||||||||||||||| |||| | | |||||||||||||||||||||||||    
T  20382337 ttggcggcataggatgggggttctgcggggtgccaacctagttgggatgttg 20382388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 380
Target Start/End: Complemental strand, 3399628 - 3399558
Alignment:
Q  311 agtttggcggcataggatggaggtttc-cagggtgccaacctagttgggatgttggtgtttccttttgatg 380  Q
    |||||| |||||||||||| ||||||| | |||||||||||||||||| | || | |||| ||||||||||    
T  3399628 agtttgacggcataggatgaaggtttctcggggtgccaacctagttggtaagtcgatgttgccttttgatg 3399558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 380
Target Start/End: Original strand, 10996375 - 10996445
Alignment:
Q  311 agtttggcggcataggatggaggtttcc-agggtgccaacctagttgggatgttggtgtttccttttgatg 380  Q
    |||||||||||||||||||||  |||||  |||||||||| |||||| ||| | |||||||||| ||||||    
T  10996375 agtttggcggcataggatggaattttcctggggtgccaacttagttgagatatcggtgtttcctcttgatg 10996445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 362
Target Start/End: Complemental strand, 11295461 - 11295395
Alignment:
Q  298 aataaaattt-taaagtttggcggcataggatggaggtttc-cagggtgccaacctagttgggatgt 362  Q
    |||||||||| || |||||||||||||||||| |||||||| | | |||||||||||||| ||||||    
T  11295461 aataaaatttatagagtttggcggcataggatagaggtttctcggagtgccaacctagtttggatgt 11295395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 380
Target Start/End: Original strand, 28780182 - 28780252
Alignment:
Q  311 agtttggcggcataggatggaggtttccaggg-tgccaacctagttgggatgttggtgtttccttttgatg 380  Q
    ||||||||||||||||||| || ||||  ||| |||||||||||||||||||| | |||| ||| ||||||    
T  28780182 agtttggcggcataggatgaagatttcttgggatgccaacctagttgggatgtcgatgttgcctcttgatg 28780252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 379
Target Start/End: Original strand, 23050630 - 23050699
Alignment:
Q  311 agtttggcggcataggatggaggtttc-cagggtgccaacctagttgggatgttggtgtttccttttgat 379  Q
    |||||||||| ||||||||||||| || | || || |||||||||||||||| || |||||||| |||||    
T  23050630 agtttggcggtataggatggaggtatcactggatgtcaacctagttgggatgctgttgtttcctcttgat 23050699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 362
Target Start/End: Complemental strand, 38993171 - 38993122
Alignment:
Q  314 ttggcggcataggatggaggtt-tccagggtgccaacctagttgggatgt 362  Q
    ||||||||||||||||| |||| | | |||||||||||||||||||||||    
T  38993171 ttggcggcataggatgggggttctgcggggtgccaacctagttgggatgt 38993122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 34)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 237 - 373
Target Start/End: Complemental strand, 31633730 - 31633596
Alignment:
Q  237 tcttctcagggttttggccttgtccgccctcttcttgtatatatttttccnnnnnnnnnnnaataaaattttaaagtttggcggcataggatggaggttt 336  Q
    |||||| ||||||||||||| |||| ||||||||||||||||||||||||           |||||||||||| ||||||||||||||||| ||||||||    
T  31633730 tcttctgagggttttggcctagtcccccctcttcttgtatatatttttcctttttttt---aataaaattttagagtttggcggcataggacggaggttt 31633634  T
Q  337 -ccagggtgccaacctagttgggatgttggtgtttcct 373  Q
     ||||| |||||| ||||||||||||| ||||||||||    
T  31633633 cccaggatgccaatctagttgggatgtcggtgtttcct 31633596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 237 - 373
Target Start/End: Complemental strand, 33325989 - 33325857
Alignment:
Q  237 tcttctcagggttttggccttgtccgccctcttcttgtatatatttttccnnnnnnnnnnnaataaaattttaaagtttggcggcataggatggaggttt 336  Q
    |||||| ||||||||||||| |||| ||||||||||||||||||||||||           |||||||||||| |||||| |||||||||| ||||||||    
T  33325989 tcttctgagggttttggcctagtcccccctcttcttgtatatatttttccttttttt----aataaaattttagagtttgacggcataggacggaggttt 33325894  T
Q  337 ccagggtgccaacctagttgggatgttggtgtttcct 373  Q
    || || ||||| ||||||||| |||| ||||||||||    
T  33325893 cccggatgccagcctagttggtatgtcggtgtttcct 33325857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 298 - 362
Target Start/End: Complemental strand, 9351214 - 9351149
Alignment:
Q  298 aataaaattttaaagtttggcggcataggatggaggtttc-cagggtgccaacctagttgggatgt 362  Q
    |||||||||||| | ||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  9351214 aataaaattttagaatttggcggcataggatggaggtttctcggggtgccaacctagttgggatgt 9351149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 106 - 352
Target Start/End: Complemental strand, 8212536 - 8212290
Alignment:
Q  106 cagggttctgtttggttagattcgcttctgacggagctgcacctggacttctttcgtgatagacttggtttgcgtaactacaggtttccttaggtctctg 205  Q
    |||||||| |||||||||||| |||  | ||||||| | || ||||| ||||||||||||| | |||| |||| |||||||| ||| |||||| ||  ||    
T  8212536 cagggttcagtttggttagatacgcccc-gacggagttacatctggatttctttcgtgataaagttggcttgcctaactacatgttcccttagttcattg 8212438  T
Q  206 tagtctgctttaacattatttttgttttc--tgtcttctcagggttttggccttgtccgccctcttcttgtatatatttttccnnnnnnnnnnnaataaa 303  Q
     |||||||| |||  || ||||| | ||   | ||||   ||||||||||||| |||| ||||||| ||||||||||||||||           ||||||    
T  8212437 cagtctgctgtaattttctttttctatttattttcttacgagggttttggcctagtcccccctctttttgtatatatttttccctttttttt--aataaa 8212340  T
Q  304 attttaaagtttggcggcataggatggaggtttc-cagggtgccaaccta 352  Q
    |||||| ||||| ||||||||||||||||||||| | |||||||||||||    
T  8212339 attttagagtttagcggcataggatggaggtttcgcggggtgccaaccta 8212290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 298 - 380
Target Start/End: Original strand, 14641424 - 14641507
Alignment:
Q  298 aataaaattttaaagtttggcggcataggatggaggtttccaggg-tgccaacctagttgggatgttggtgtttccttttgatg 380  Q
    |||||| ||||| || |||||||||||||||||||| |||| ||| |||||||||||||||||||| |||||| ||| ||||||    
T  14641424 aataaagttttagagattggcggcataggatggagggttcccggggtgccaacctagttgggatgtcggtgttccctcttgatg 14641507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 298 - 380
Target Start/End: Original strand, 20898950 - 20899033
Alignment:
Q  298 aataaaattttaaagtttggcggcataggatggaggtttccaggg-tgccaacctagttgggatgttggtgtttccttttgatg 380  Q
    ||||| |||||| |||||||| ||||||| ||||||||||| ||| |||||||||||||||||||| |||||| ||| ||||||    
T  20898950 aataatattttagagtttggcagcatagggtggaggtttcctggggtgccaacctagttgggatgtcggtgttgcctcttgatg 20899033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 311 - 370
Target Start/End: Original strand, 11650840 - 11650900
Alignment:
Q  311 agtttggcggcataggatggaggtttcc-agggtgccaacctagttgggatgttggtgttt 370  Q
    |||||||||||||| |||||||||| || |||||||||||||||||||||||| |||||||    
T  11650840 agtttggcggcataagatggaggttccctagggtgccaacctagttgggatgtaggtgttt 11650900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 314 - 362
Target Start/End: Original strand, 24373519 - 24373568
Alignment:
Q  314 ttggcggcataggatggaggtt-tccagggtgccaacctagttgggatgt 362  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  24373519 ttggcggcataggatggaggttctccagggtaccaacctagttgggatgt 24373568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 197
Target Start/End: Complemental strand, 26592791 - 26592706
Alignment:
Q  112 tctgtttggttagattcgcttctgacggagctgcacctggacttctttcgtgatagacttggtttgcgtaactacaggtttcctta 197  Q
    |||||||||||||||||| | |  |||||| |||| || || ||||||||||||||| | ||||||| |||||||| |||||||||    
T  26592791 tctgtttggttagattcgttacccacggagttgcatcttgatttctttcgtgatagagtaggtttgcctaactacatgtttcctta 26592706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 305 - 380
Target Start/End: Complemental strand, 14372269 - 14372193
Alignment:
Q  305 ttttaaagtttggcggcataggatggaggtttc-cagggtgccaacctagttgggatgttggtgtttccttttgatg 380  Q
    ||||| |||||||||||||||||||||| |||| | | ||||||||||||||||||||| | |||| ||| ||||||    
T  14372269 ttttagagtttggcggcataggatggagatttctcggagtgccaacctagttgggatgtcgatgttgcctcttgatg 14372193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 101 - 197
Target Start/End: Original strand, 14641224 - 14641320
Alignment:
Q  101 ccattcagggttctgtttggttagattcgcttctgacggagctgcacctggacttctttcgtgatagacttggtttgcgtaactacaggtttcctta 197  Q
    ||||||| || ||||||||||| |||||||| |  |||||| |||| || || |||||||| |||||| | ||||||| ||| ||||||||||||||    
T  14641224 ccattcacggctctgtttggttggattcgctacctacggagatgcatctagatttctttcgggatagagtaggtttgcctaattacaggtttcctta 14641320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 298 - 362
Target Start/End: Complemental strand, 18306817 - 18306753
Alignment:
Q  298 aataaaattttaaagtttggcggcataggatggaggtttccagggtgccaacctagttgggatgt 362  Q
    |||||| ||||  |||||| ||||||||||||||||| ||  |||||||||||||||||||||||    
T  18306817 aataaatttttcgagtttgacggcataggatggaggtatctcgggtgccaacctagttgggatgt 18306753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 325 - 380
Target Start/End: Complemental strand, 24617796 - 24617740
Alignment:
Q  325 ggatggaggttt-ccagggtgccaacctagttgggatgttggtgtttccttttgatg 380  Q
    |||||||||||| || ||||||||||||||||||||||| |||||||||| ||||||    
T  24617796 ggatggaggttttccggggtgccaacctagttgggatgtcggtgtttcctcttgatg 24617740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 311 - 362
Target Start/End: Original strand, 26522726 - 26522778
Alignment:
Q  311 agtttggcggcataggatggaggtttc-cagggtgccaacctagttgggatgt 362  Q
    |||||||||||||||||||||||| || | |||||||||||||||||||||||    
T  26522726 agtttggcggcataggatggaggtctctcggggtgccaacctagttgggatgt 26522778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 313 - 380
Target Start/End: Complemental strand, 34338169 - 34338101
Alignment:
Q  313 tttggcggcataggatggaggtttc-cagggtgccaacctagttgggatgttggtgtttccttttgatg 380  Q
    |||||||||||||||||||||| || | ||||||||||||||||||||||| | || ||||| ||||||    
T  34338169 tttggcggcataggatggaggtctctcggggtgccaacctagttgggatgtcgatgattcctcttgatg 34338101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 314 - 380
Target Start/End: Original strand, 13575005 - 13575072
Alignment:
Q  314 ttggcggcataggatggaggtttccagg-gtgccaacctagttgggatgttggtgtttccttttgatg 380  Q
    ||||||| |||||||| |||||||| || ||||||||||||||||||||| |||||| ||| ||||||    
T  13575005 ttggcggtataggatgaaggtttcccggagtgccaacctagttgggatgtcggtgttccctcttgatg 13575072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 314 - 380
Target Start/End: Original strand, 13577544 - 13577611
Alignment:
Q  314 ttggcggcataggatggaggtttccagg-gtgccaacctagttgggatgttggtgtttccttttgatg 380  Q
    ||||||| |||||||| |||||||| || ||||||||||||||||||||| |||||| ||| ||||||    
T  13577544 ttggcggtataggatgaaggtttcccggagtgccaacctagttgggatgtcggtgttccctcttgatg 13577611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 314 - 380
Target Start/End: Complemental strand, 15141978 - 15141911
Alignment:
Q  314 ttggcggcataggatggaggtttccagggt-gccaacctagttgggatgttggtgtttccttttgatg 380  Q
    ||||||||| | |||| |||||||| |||| ||||||||||||||||||| |||||||||| ||||||    
T  15141978 ttggcggcagacgatgcaggtttcccgggttgccaacctagttgggatgtcggtgtttcctcttgatg 15141911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 98 - 141
Target Start/End: Complemental strand, 15952195 - 15952152
Alignment:
Q  98 acgccattcagggttctgtttggttagattcgcttctgacggag 141  Q
    ||||||||||||||||||||||||||||| |||||| |||||||    
T  15952195 acgccattcagggttctgtttggttagatacgcttccgacggag 15952152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 315 - 380
Target Start/End: Original strand, 11319474 - 11319540
Alignment:
Q  315 tggcggcataggatggaggtt-tccagggtgccaacctagttgggatgttggtgtttccttttgatg 380  Q
    |||||||||| ||| |||||| |||| |||||||||||||||| |||||||||| ||||| ||||||    
T  11319474 tggcggcataagatagaggttctccaaggtgccaacctagttgagatgttggtgcttcctcttgatg 11319540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 314 - 362
Target Start/End: Original strand, 12435958 - 12436007
Alignment:
Q  314 ttggcggcataggatggaggttt-ccagggtgccaacctagttgggatgt 362  Q
    |||||||||||||||||||||||  | |||||||||||||||||||||||    
T  12435958 ttggcggcataggatggaggtttgtcggggtgccaacctagttgggatgt 12436007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 306 - 362
Target Start/End: Complemental strand, 26592604 - 26592547
Alignment:
Q  306 tttaaagtttggcggcataggatggaggttt-ccagggtgccaacctagttgggatgt 362  Q
    |||| |||||||||||||||||||||||||| ||| ||| ||||||||||||| ||||    
T  26592604 tttagagtttggcggcataggatggaggtttcccaaggtaccaacctagttggaatgt 26592547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 362
Target Start/End: Original strand, 3056938 - 3056990
Alignment:
Q  311 agtttggcggcataggatggaggtttc-cagggtgccaacctagttgggatgt 362  Q
    ||||||||||||||||||||||||||| | |||| ||||| ||||||||||||    
T  3056938 agtttggcggcataggatggaggtttctcggggtaccaacttagttgggatgt 3056990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 373
Target Start/End: Complemental strand, 17112313 - 17112237
Alignment:
Q  298 aataaaattttaaagtttggcggcataggatggaggtttccagg-gtgccaacctagttgggatgttggtgtttcct 373  Q
    |||||||||||||| ||||||| | |||||||||||||||| ||  |||||| |||||||  |||| ||||||||||    
T  17112313 aataaaattttaaaatttggcgacgtaggatggaggtttcccggaatgccaatctagttgatatgtcggtgtttcct 17112237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 362
Target Start/End: Original strand, 20589638 - 20589686
Alignment:
Q  315 tggcggcataggatggaggtt-tccagggtgccaacctagttgggatgt 362  Q
    ||||||||||||||||||||| ||| ||||||||||||||||| |||||    
T  20589638 tggcggcataggatggaggttctccggggtgccaacctagttgagatgt 20589686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 362
Target Start/End: Complemental strand, 24127901 - 24127849
Alignment:
Q  311 agtttggcggcataggatggaggtttc-cagggtgccaacctagttgggatgt 362  Q
    ||||||||||||||||||||||||||| |  ||||||||||||| ||||||||    
T  24127901 agtttggcggcataggatggaggtttctcgaggtgccaacctagctgggatgt 24127849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 298 - 380
Target Start/End: Original strand, 13565901 - 13565984
Alignment:
Q  298 aataaaattttaaagtttggcggcataggatggaggtttccagg-gtgccaacctagttgggatgttggtgtttccttttgatg 380  Q
    |||||| ||||| |||||||||| ||||||| ||||||||  |  ||||||||||||||||||||| | |||| ||| ||||||    
T  13565901 aataaatttttagagtttggcggtataggatagaggtttcttgatgtgccaacctagttgggatgtcgttgttccctcttgatg 13565984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 370
Target Start/End: Complemental strand, 841382 - 841321
Alignment:
Q  311 agtttggcggcataggatggaggtttcca--gggtgccaacctagttgggatgttggtgttt 370  Q
    ||||||||| ||||||||||||||| ||   |||||||||| |||||||||||| |||||||    
T  841382 agtttggcgacataggatggaggttccctcggggtgccaacttagttgggatgtcggtgttt 841321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 362
Target Start/End: Complemental strand, 9696948 - 9696883
Alignment:
Q  298 aataaaattttaaagtttggcggcataggatggaggtttc-cagggtgccaacctagttgggatgt 362  Q
    |||||| ||||  |||||||||||||||||||||||| || | | |||||||| ||||||||||||    
T  9696948 aataaatttttcgagtttggcggcataggatggaggtatctcggcgtgccaacttagttgggatgt 9696883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 362
Target Start/End: Original strand, 14982378 - 14982443
Alignment:
Q  298 aataaaattttaaagtttggcggcataggatggaggtttc-cagggtgccaacctagttgggatgt 362  Q
    ||||||| |||| ||||||||||||||||||||| ||||| |  |||| ||||| |||||||||||    
T  14982378 aataaaaatttagagtttggcggcataggatggaagtttctcgaggtgtcaaccaagttgggatgt 14982443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 378
Target Start/End: Original strand, 1448791 - 1448859
Alignment:
Q  311 agtttggcggcataggatggaggtt-tccagggtgccaacctagttgggatgttggtgtttccttttga 378  Q
    |||||||||||||||||| |||||| |||  |||||| |||||||| |||||| |||| ||||| ||||    
T  1448791 agtttggcggcataggatagaggttctccgtggtgccgacctagttaggatgtcggtgcttcctcttga 1448859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 380
Target Start/End: Complemental strand, 8483679 - 8483639
Alignment:
Q  340 gggtgccaacctagttgggatgttggtgtttccttttgatg 380  Q
    |||||||||||||||||||||||  ||||||||| ||||||    
T  8483679 gggtgccaacctagttgggatgtccgtgtttcctcttgatg 8483639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 362
Target Start/End: Original strand, 10138872 - 10138924
Alignment:
Q  311 agtttggcggcataggatggaggtttc-cagggtgccaacctagttgggatgt 362  Q
    |||||||||| ||||||| ||||| || | |||||||||||||||||||||||    
T  10138872 agtttggcggtataggatagaggtgtctcggggtgccaacctagttgggatgt 10138924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 362
Target Start/End: Complemental strand, 27962116 - 27962068
Alignment:
Q  315 tggcggcataggatggaggtttc-cagggtgccaacctagttgggatgt 362  Q
    |||||||||||||||||| | || | |||||||||||||||||||||||    
T  27962116 tggcggcataggatggagatgtctcggggtgccaacctagttgggatgt 27962068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 235 - 373
Target Start/End: Complemental strand, 29250395 - 29250257
Alignment:
Q  235 tgtcttctcagggttttggccttgtccgccctcttcttgtatatatttttccnnnnnnnnnnnaataaaattttaaagtttggcggcataggatggaggt 334  Q
    |||||||| ||||||||||||| || | || |||||||||||||||||||||           |||||||||||| ||||||||||||||||| ||||||    
T  29250395 tgtcttctgagggttttggcctagttccccttcttcttgtatatatttttccttttttttaaaaataaaattttagagtttggcggcataggacggaggt 29250296  T
Q  335 ttccagggtgccaacctagttgggatgttggtgtttcct 373  Q
    |||| || ||||||||||||||| |||  ||||||||||    
T  29250295 ttcccggatgccaacctagttggtatgccggtgtttcct 29250257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 298 - 380
Target Start/End: Original strand, 16290844 - 16290927
Alignment:
Q  298 aataaaattttaaagtttggcggcataggatggaggttt-ccagggtgccaacctagttgggatgttggtgtttccttttgatg 380  Q
    ||||| |||||| |||||||| ||||||||||||||||| || ||||||||||||||||||||||| |||||| ||| ||||||    
T  16290844 aataatattttagagtttggcagcataggatggaggtttcccggggtgccaacctagttgggatgtcggtgttgcctcttgatg 16290927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 314 - 380
Target Start/End: Original strand, 24317404 - 24317470
Alignment:
Q  314 ttggcggcataggatggaggtttccagggtgccaacctagttgggatgttggtgtttccttttgatg 380  Q
    ||||||||||||||| |||||| || |||||||||||||||||| ||||||||||||||| ||||||    
T  24317404 ttggcggcataggatagaggttcccggggtgccaacctagttggtatgttggtgtttcctcttgatg 24317470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 298 - 380
Target Start/End: Complemental strand, 24184841 - 24184758
Alignment:
Q  298 aataaaattttaaagtttggcggcataggatggaggtttccaggg-tgccaacctagttgggatgttggtgtttccttttgatg 380  Q
    |||||| ||||| || |||||||||||||||||||| |||| ||| |||||||||||||||||||| |||||| ||| ||||||    
T  24184841 aataaagttttagagattggcggcataggatggagggttcccgggatgccaacctagttgggatgtcggtgttccctcttgatg 24184758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 298 - 362
Target Start/End: Original strand, 26867446 - 26867511
Alignment:
Q  298 aataaaattttaaagtttggcggcataggatggaggtttccag-ggtgccaacctagttgggatgt 362  Q
    |||||| ||||| ||||||||||| |||||||||||||||| | ||||||||||||||||||||||    
T  26867446 aataaatttttagagtttggcggcgtaggatggaggtttcccgaggtgccaacctagttgggatgt 26867511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 298 - 362
Target Start/End: Original strand, 29840849 - 29840914
Alignment:
Q  298 aataaaattttaaagtttggcggcataggatggaggtttc-cagggtgccaacctagttgggatgt 362  Q
    |||||||||||| || ||||||||||| |||||||||||| | |||||||||||||||||||||||    
T  29840849 aataaaattttagagattggcggcatatgatggaggtttctcggggtgccaacctagttgggatgt 29840914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 305 - 380
Target Start/End: Original strand, 26657662 - 26657738
Alignment:
Q  305 ttttaaagtttggcggcataggatggaggtttccagg-gtgccaacctagttgggatgttggtgtttccttttgatg 380  Q
    ||||| ||||||| |||||||||||||||||||| |  |||||||| |||||||||||| |||||||||| ||||||    
T  26657662 ttttagagtttggtggcataggatggaggtttcccgaagtgccaacttagttgggatgtcggtgtttcctcttgatg 26657738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 311 - 362
Target Start/End: Original strand, 23595378 - 23595430
Alignment:
Q  311 agtttggcggcataggatggaggtttc-cagggtgccaacctagttgggatgt 362  Q
    |||||||||||||||||||||||| || |||||| ||||||||||||||||||    
T  23595378 agtttggcggcataggatggaggtctctcagggtaccaacctagttgggatgt 23595430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 311 - 362
Target Start/End: Original strand, 23604300 - 23604352
Alignment:
Q  311 agtttggcggcataggatggaggtttc-cagggtgccaacctagttgggatgt 362  Q
    |||||||||||||||||||||||| || |||||| ||||||||||||||||||    
T  23604300 agtttggcggcataggatggaggtctctcagggtaccaacctagttgggatgt 23604352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 314 - 364
Target Start/End: Complemental strand, 40263730 - 40263679
Alignment:
Q  314 ttggcggcataggatggaggtt-tccagggtgccaacctagttgggatgttg 364  Q
    ||||||||||||||||| |||| | |||||||||||||||||||||||||||    
T  40263730 ttggcggcataggatgggggttctgcagggtgccaacctagttgggatgttg 40263679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 311 - 380
Target Start/End: Original strand, 44348 - 44418
Alignment:
Q  311 agtttggcggcataggatggaggtttccaggg-tgccaacctagttgggatgttggtgtttccttttgatg 380  Q
    |||||||| |||||| |||||||||||| ||| | |||||||| ||||||| | |||||||||||||||||    
T  44348 agtttggctgcatagtatggaggtttcccggggtaccaacctaattgggatttcggtgtttccttttgatg 44418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 298 - 357
Target Start/End: Complemental strand, 10568391 - 10568330
Alignment:
Q  298 aataaaat-tttaaagtttggcggcataggatggaggtttc-cagggtgccaacctagttgg 357  Q
    |||||||| |||| ||||||||||||||||||||| ||||| | ||||||||||||||||||    
T  10568391 aataaaatctttagagtttggcggcataggatggaagtttctcggggtgccaacctagttgg 10568330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 298 - 362
Target Start/End: Original strand, 16889962 - 16890027
Alignment:
Q  298 aataaaattttaaagtttggcggcataggatggaggtttc-cagggtgccaacctagttgggatgt 362  Q
    |||||| ||||  |||||||||||||| ||||||||| || | |||||||||||||||||||||||    
T  16889962 aataaattttttgagtttggcggcataagatggaggtatctcggggtgccaacctagttgggatgt 16890027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 380
Target Start/End: Original strand, 17274705 - 17274781
Alignment:
Q  305 ttttaaagtttggcggcataggatggaggtttc-cagggtgccaacctagttgggatgttggtgtttccttttgatg 380  Q
    ||||| |||||||| ||||||||||||| |||| || |||||||||| ||||||||||| | |||| ||| ||||||    
T  17274705 ttttagagtttggcagcataggatggagatttctcacggtgccaaccaagttgggatgtcgatgttgcctcttgatg 17274781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 362
Target Start/End: Original strand, 43856119 - 43856171
Alignment:
Q  311 agtttggcggcataggatggaggtt-tccagggtgccaacctagttgggatgt 362  Q
    |||||||||||| |||||||||||| | | |||||||||||||||||||||||    
T  43856119 agtttggcggcacaggatggaggttctgcggggtgccaacctagttgggatgt 43856171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 311 - 349
Target Start/End: Complemental strand, 16043719 - 16043680
Alignment:
Q  311 agtttggcggcataggatggaggtttc-cagggtgccaac 349  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  16043719 agtttggcggcataggatggaggtttcgcagggtgccaac 16043680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 311 - 369
Target Start/End: Complemental strand, 21499419 - 21499360
Alignment:
Q  311 agtttggcggcataggatggaggtttccag-ggtgccaacctagttgggatgttggtgtt 369  Q
    ||||||||||| |||||| ||||||| | | |||||||||||||||||||||| ||||||    
T  21499419 agtttggcggcgtaggattgaggttttctgcggtgccaacctagttgggatgtcggtgtt 21499360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 312 - 362
Target Start/End: Complemental strand, 26393418 - 26393367
Alignment:
Q  312 gtttggcggcataggatggaggtttc-cagggtgccaacctagttgggatgt 362  Q
    |||||||||||||||||||||||||| | ||||| |||| ||||||||||||    
T  26393418 gtttggcggcataggatggaggtttcgcggggtggcaacttagttgggatgt 26393367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 362
Target Start/End: Complemental strand, 15234852 - 15234787
Alignment:
Q  298 aataaaattttaaagtttggcggcataggatggagg-tttccagggtgccaacctagttgggatgt 362  Q
    |||||||||||| ||||||| | ||||||||||||| |||||  |||||||||||| ||| |||||    
T  15234852 aataaaattttagagtttggagacataggatggaggttttccgaggtgccaacctaattgagatgt 15234787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 380
Target Start/End: Complemental strand, 18036880 - 18036823
Alignment:
Q  324 aggatggaggtttc-cagggtgccaacctagttgggatgttggtgtttccttttgatg 380  Q
    |||||||||||| | | |||||||||| |||||||||||| |||||||||| ||||||    
T  18036880 aggatggaggttcctcggggtgccaacatagttgggatgtcggtgtttcctcttgatg 18036823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 356
Target Start/End: Complemental strand, 16325708 - 16325651
Alignment:
Q  298 aataaaattttaaagtttggcggcataggatggaggtttccag-ggtgccaacctagttg 356  Q
    |||||||||||| |||  ||||||||||||||||||||| | | ||||||||||||||||    
T  16325708 aataaaattttagagt--ggcggcataggatggaggttttctgaggtgccaacctagttg 16325651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 362
Target Start/End: Original strand, 21593184 - 21593236
Alignment:
Q  311 agtttggcggcataggatggaggtttc-cagggtgccaacctagttgggatgt 362  Q
    ||||||||||||||||||| |||| || | |||||||||||||||||| ||||    
T  21593184 agtttggcggcataggatgaaggtctctcggggtgccaacctagttggaatgt 21593236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 26867301 - 26867345
Alignment:
Q  154 ttctttcgtgatagacttggtttgcgtaactacaggtttccttag 198  Q
    ||||| ||||||||| ||||||||| |||||| ||||||||||||    
T  26867301 ttcttccgtgatagagttggtttgcctaactataggtttccttag 26867345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 284
Target Start/End: Original strand, 29233298 - 29233338
Alignment:
Q  244 agggttttggccttgtccgccctcttcttgtatatattttt 284  Q
    ||||||||||||| |||| ||||||| ||||||||||||||    
T  29233298 agggttttggcctagtcccccctctttttgtatatattttt 29233338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0911 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0911
Description:

Target: scaffold0911; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 298 - 380
Target Start/End: Complemental strand, 2309 - 2226
Alignment:
Q  298 aataaaattttaaagtttggcggcataggatggaggttt-ccagggtgccaacctagttgggatgttggtgtttccttttgatg 380  Q
    |||||||||||| |||||||||||||||||||||||||| || ||||||||| |||||||| | || |||||||||||||||||    
T  2309 aataaaattttagagtttggcggcataggatggaggtttcccggggtgccaatctagttggaacgtcggtgtttccttttgatg 2226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 237 - 373
Target Start/End: Original strand, 52640 - 52773
Alignment:
Q  237 tcttctcagggttttggccttgtccgccctcttcttgtatatatttttccnnnnnnnnnnnaataaaattttaaagtttggcggcataggatggaggttt 336  Q
    |||||| ||||||||||||| |||| ||||||| ||||||||||||||||           |||||||||||||||||||| || |||||| ||||||||    
T  52640 tcttctgagggttttggcctagtcccccctctttttgtatatatttttccttttttt----aataaaattttaaagtttggtggtataggacggaggttt 52735  T
Q  337 -ccagggtgccaacctagttgggatgttggtgtttcct 373  Q
     ||| |||||||||||||||||||| | ||||||||||    
T  52736 cccaaggtgccaacctagttgggatttcggtgtttcct 52773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 305 - 380
Target Start/End: Original strand, 103701 - 103777
Alignment:
Q  305 ttttaaagtttggcggcataggatggaggtttc-cagggtgccaacctagttgggatgttggtgtttccttttgatg 380  Q
    ||||| |||||| ||||||||||||||| |||| | ||||||||||||||||||||||| | |||| ||| ||||||    
T  103701 ttttagagtttgacggcataggatggagatttctcggggtgccaacctagttgggatgtcgatgttgcctcttgatg 103777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 298 - 380
Target Start/End: Complemental strand, 11416065 - 11415982
Alignment:
Q  298 aataaaattttaaagtttggcggcataggatggaggttt-ccagggtgccaacctagttgggatgttggtgtttccttttgatg 380  Q
    |||||||||||| |||||||| |||||| |||| ||||| ||||||||||||| |||||||||||| |||||||||||||||||    
T  11416065 aataaaattttagagtttggcagcatagaatgggggttttccagggtgccaacttagttgggatgtcggtgtttccttttgatg 11415982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 299 - 362
Target Start/End: Original strand, 23795451 - 23795515
Alignment:
Q  299 ataaaattttaaagtttggcggcataggatggaggtttc-cagggtgccaacctagttgggatgt 362  Q
    ||||||||||| |||||| |||||||||||||||||||| |||| ||||||||||||||||||||    
T  23795451 ataaaattttagagtttgacggcataggatggaggtttcacaggatgccaacctagttgggatgt 23795515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 298 - 362
Target Start/End: Complemental strand, 33040664 - 33040599
Alignment:
Q  298 aataaaattttaaagtttggcggcataggatggaggtttc-cagggtgccaacctagttgggatgt 362  Q
    |||||||||||| |||||| ||||||| |||||||||||| | |||||||||||||||||||||||    
T  33040664 aataaaattttagagtttgacggcatatgatggaggtttctcggggtgccaacctagttgggatgt 33040599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 298 - 373
Target Start/End: Original strand, 25219641 - 25219717
Alignment:
Q  298 aataaaattttaaagtttggcggcataggatggaggtttccag-ggtgccaacctagttgggatgttggtgtttcct 373  Q
    |||||||||||| ||||||||||||||||  ||| |||||| | ||||||||||||||||| |||| ||||||||||    
T  25219641 aataaaattttagagtttggcggcatagggcggaagtttcccgaggtgccaacctagttggaatgtcggtgtttcct 25219717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 298 - 380
Target Start/End: Complemental strand, 8667187 - 8667105
Alignment:
Q  298 aataaaattttaaagtttggcggcataggatggaggtttccagggtgccaacctagttgggatgttggtgtttccttttgatg 380  Q
    ||||| |||||| |||||||||||||||||||||||||||  |||  ||||||||||| |||||| | |||| ||| ||||||    
T  8667187 aataatattttagagtttggcggcataggatggaggtttctcggggtccaacctagttaggatgtcgatgttgcctcttgatg 8667105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 305 - 380
Target Start/End: Complemental strand, 44673758 - 44673682
Alignment:
Q  305 ttttaaagtttggcggcataggatggaggtttc-cagggtgccaacctagttgggatgttggtgtttccttttgatg 380  Q
    ||||| |||||||||||||||||||||| |||  | ||||||||||||||||||||||| | |||| ||| ||||||    
T  44673758 ttttagagtttggcggcataggatggagattttgcggggtgccaacctagttgggatgtcgatgttgcctcttgatg 44673682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 311 - 357
Target Start/End: Complemental strand, 39406894 - 39406847
Alignment:
Q  311 agtttggcggcataggatggaggtttc-cagggtgccaacctagttgg 357  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||    
T  39406894 agtttggcggcataggatggaggtttctcggggtgccaacctagttgg 39406847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 362
Target Start/End: Complemental strand, 11485274 - 11485222
Alignment:
Q  311 agtttggcggcataggatggaggtttc-cagggtgccaacctagttgggatgt 362  Q
    |||||||||||||||||||||||  || | |||||||||||||||||||||||    
T  11485274 agtttggcggcataggatggaggcctctcggggtgccaacctagttgggatgt 11485222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 340 - 380
Target Start/End: Complemental strand, 34657960 - 34657920
Alignment:
Q  340 gggtgccaacctagttgggatgttggtgtttccttttgatg 380  Q
    ||||||||||||||||||||||| |||||||||| ||||||    
T  34657960 gggtgccaacctagttgggatgtcggtgtttcctcttgatg 34657920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 313 - 379
Target Start/End: Original strand, 15159407 - 15159474
Alignment:
Q  313 tttggcggcataggatggaggtttccagg-gtgccaacctagttgggatgttggtgtttccttttgat 379  Q
    |||||||||||||| ||||||||||  || ||| |||| |||||||||||| | ||||||||||||||    
T  15159407 tttggcggcataggttggaggtttcgcggagtgtcaacttagttgggatgtcgttgtttccttttgat 15159474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 362
Target Start/End: Original strand, 18234245 - 18234295
Alignment:
Q  313 tttggcggcataggatggaggtttc-cagggtgccaacctagttgggatgt 362  Q
    |||||||||||||||||||||| || | |||||||||||||||||| ||||    
T  18234245 tttggcggcataggatggaggtatctcggggtgccaacctagttggaatgt 18234295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 362
Target Start/End: Original strand, 6192577 - 6192638
Alignment:
Q  302 aaattttaaagtttggcggcataggatggaggtttccag-ggtgccaacctagttgggatgt 362  Q
    |||||||  |||||||||||||| ||||||||| ||  | ||||||||||||||||||||||    
T  6192577 aaattttcgagtttggcggcataagatggaggtatctcgaggtgccaacctagttgggatgt 6192638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 362
Target Start/End: Complemental strand, 1924723 - 1924679
Alignment:
Q  319 ggcataggatggaggtttc-cagggtgccaacctagttgggatgt 362  Q
    |||||||||||||||| || | |||||||||||||||||||||||    
T  1924723 ggcataggatggaggtgtctcggggtgccaacctagttgggatgt 1924679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 302 - 373
Target Start/End: Complemental strand, 40926547 - 40926475
Alignment:
Q  302 aaattttaaagtttggcggcataggatggaggttt-ccagggtgccaacctagttgggatgttggtgtttcct 373  Q
    |||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||| | ||||||||    
T  40926547 aaattttatagtttggcggcataggatggaggtttcccggggtgccaacctagttgggatgtcgatgtttcct 40926475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 298 - 371
Target Start/End: Original strand, 24297329 - 24297403
Alignment:
Q  298 aataaaattttaaagtttggcggcataggatggaggtttccag-ggtgccaacctagttgggatgttggtgtttc 371  Q
    ||||||||||||||||||| | ||||||||||||||||||| |  |||||||||||||||||||||  |||||||    
T  24297329 aataaaattttaaagtttgacagcataggatggaggtttcccgcagtgccaacctagttgggatgtcagtgtttc 24297403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 306 - 373
Target Start/End: Original strand, 17151291 - 17151359
Alignment:
Q  306 tttaaagtttggcggcataggatggaggtttccagg-gtgccaacctagttgggatgttggtgtttcct 373  Q
    |||| |||||||||||||||||||||||||||| || |||||||||||||||| ||||  |||||||||    
T  17151291 tttagagtttggcggcataggatggaggtttcccggagtgccaacctagttggcatgtcagtgtttcct 17151359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 314 - 380
Target Start/End: Original strand, 28522856 - 28522923
Alignment:
Q  314 ttggcggcataggatggaggtt-tccagggtgccaacctagttgggatgttggtgtttccttttgatg 380  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||||   |||||||| ||||||    
T  28522856 ttggcggcataggatggaggttctctagggtgccaacctagttgggatgtcaatgtttcctcttgatg 28522923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 298 - 371
Target Start/End: Complemental strand, 24270907 - 24270833
Alignment:
Q  298 aataaaattttaaagtttggcggcataggatggaggtttccag-ggtgccaacctagttgggatgttggtgtttc 371  Q
    |||||||||||| |||||| | ||||||||||||||||||| |  |||||||||||||||||||||  |||||||    
T  24270907 aataaaattttagagtttgacagcataggatggaggtttcccgcagtgccaacctagttgggatgtcagtgtttc 24270833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 305 - 362
Target Start/End: Complemental strand, 36802348 - 36802290
Alignment:
Q  305 ttttaaagtttggcggcataggatggaggtttc-cagggtgccaacctagttgggatgt 362  Q
    ||||| ||||||||||||||||||||||||||| | ||||||||||||||||| |||||    
T  36802348 ttttagagtttggcggcataggatggaggtttctcggggtgccaacctagttgagatgt 36802290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 317 - 380
Target Start/End: Complemental strand, 13619165 - 13619101
Alignment:
Q  317 gcggcataggatggaggtt-tccagggtgccaacctagttgggatgttggtgtttccttttgatg 380  Q
    ||||||||||||||||||| |||  | ||||||||||||||||||||| ||||||||| ||||||    
T  13619165 gcggcataggatggaggttctccgagttgccaacctagttgggatgttagtgtttcctcttgatg 13619101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 305 - 362
Target Start/End: Original strand, 20477420 - 20477478
Alignment:
Q  305 ttttaaagtttggcggcataggatggaggtttc-cagggtgccaacctagttgggatgt 362  Q
    ||||| |||||| ||||||||||||||||| || | |||||||||||||||||||||||    
T  20477420 ttttagagtttgacggcataggatggaggtatctcggggtgccaacctagttgggatgt 20477478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 373
Target Start/End: Original strand, 21565846 - 21565922
Alignment:
Q  298 aataaaattttaaagtttggcggcataggatggaggtttccaggg-tgccaacctagttgggatgttggtgtttcct 373  Q
    ||||||||| || |||||| |||||||||| |||||||| | ||| ||||||||||||||| ||||  |||||||||    
T  21565846 aataaaattgtagagtttgacggcataggacggaggttttccgggatgccaacctagttggaatgtcagtgtttcct 21565922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 298 - 356
Target Start/End: Complemental strand, 17377596 - 17377537
Alignment:
Q  298 aataaaattttaaagtttggcggcataggatggaggtttc-cagggtgccaacctagttg 356  Q
    ||||| |||||| ||||||||| |||||||||||||||||   |||||||||||||||||    
T  17377596 aataatattttagagtttggcgtcataggatggaggtttcttggggtgccaacctagttg 17377537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 364
Target Start/End: Complemental strand, 22170043 - 22169989
Alignment:
Q  311 agtttggcggcataggatggaggtttc-cagggtgccaacctagttgggatgttg 364  Q
    |||||||||||||||||||||||| || | || |||||||||| |||||||||||    
T  22170043 agtttggcggcataggatggaggtctctcgggatgccaacctaattgggatgttg 22169989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 362
Target Start/End: Complemental strand, 24440041 - 24440003
Alignment:
Q  324 aggatggaggtttccagggtgccaacctagttgggatgt 362  Q
    |||| ||||||||||||| ||||||||||||||||||||    
T  24440041 aggacggaggtttccaggatgccaacctagttgggatgt 24440003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 362
Target Start/End: Original strand, 1490658 - 1490707
Alignment:
Q  314 ttggcggcataggatggaggtt-tccagggtgccaacctagttgggatgt 362  Q
    |||||||| ||||||||||||| ||| ||||| |||||||||||||||||    
T  1490658 ttggcggcgtaggatggaggttctccggggtgacaacctagttgggatgt 1490707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 369
Target Start/End: Original strand, 28948858 - 28948931
Alignment:
Q  298 aataaaattttaaagtttggc-ggcataggatggaggtttccaggg-tgccaacctagttgggatgttggtgtt 369  Q
    |||||| ||||| |||||||| |||| |||| |||||||||| ||| ||||||| |||||||||||| ||||||    
T  28948858 aataaatttttagagtttggcaggcagaggacggaggtttcccggggtgccaacatagttgggatgtcggtgtt 28948931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 362
Target Start/End: Complemental strand, 38242225 - 38242160
Alignment:
Q  298 aataaaattttaaagtttggcggcataggatggaggtttc-cagggtgccaacctagttgggatgt 362  Q
    |||||| ||||  ||| ||||||||||||||| |||| || | |||||||||||||||||||||||    
T  38242225 aataaatttttcgagtgtggcggcataggatgaaggtgtctcggggtgccaacctagttgggatgt 38242160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 362
Target Start/End: Complemental strand, 17679783 - 17679739
Alignment:
Q  319 ggcataggatggaggtttc-cagggtgccaacctagttgggatgt 362  Q
    |||||||||||||||| || | |||||||||||||||||||||||    
T  17679783 ggcataggatggaggtgtctcggggtgccaacctagttgggatgt 17679739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 362
Target Start/End: Original strand, 20386645 - 20386693
Alignment:
Q  315 tggcggcataggatggaggtttc-cagggtgccaacctagttgggatgt 362  Q
    |||||||||| || |||||| || |||||||||||||||||||||||||    
T  20386645 tggcggcatacgacggaggtatctcagggtgccaacctagttgggatgt 20386693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 362
Target Start/End: Complemental strand, 20434259 - 20434207
Alignment:
Q  311 agtttggcggcataggatggagg-tttccagggtgccaacctagttgggatgt 362  Q
    |||||||||||||||||||| || ||| | ||||||||||||||||| |||||    
T  20434259 agtttggcggcataggatgggggttttgcggggtgccaacctagttgtgatgt 20434207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 362
Target Start/End: Complemental strand, 24524149 - 24524101
Alignment:
Q  315 tggcggcataggatggaggtttc-cagggtgccaacctagttgggatgt 362  Q
    |||||||||||||||||| | || | |||||||||||||||||||||||    
T  24524149 tggcggcataggatggagatgtctcggggtgccaacctagttgggatgt 24524101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 362
Target Start/End: Original strand, 26916633 - 26916681
Alignment:
Q  315 tggcggcataggatggaggtttc-cagggtgccaacctagttgggatgt 362  Q
    |||||||||||||||||| | || | |||||||||||||||||||||||    
T  26916633 tggcggcataggatggagatgtctcggggtgccaacctagttgggatgt 26916681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 368
Target Start/End: Complemental strand, 32234517 - 32234445
Alignment:
Q  298 aataaaattttaaagtttggc-ggcataggatggaggtttccag-ggtgccaacctagttgggatgttggtgt 368  Q
    |||||||||||| |||| | | ||||||||| ||||| |||| | |||||||||||||||||||||| |||||    
T  32234517 aataaaattttagagttagacaggcataggacggaggcttcccgaggtgccaacctagttgggatgtcggtgt 32234445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 362
Target Start/End: Original strand, 34454891 - 34454943
Alignment:
Q  311 agtttggcggcataggatggaggtttc-cagggtgccaacctagttgggatgt 362  Q
    |||||||||||||||||||||| | || | ||||||||||||| |||||||||    
T  34454891 agtttggcggcataggatggagatgtctcggggtgccaacctaattgggatgt 34454943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 286
Target Start/End: Complemental strand, 40926598 - 40926558
Alignment:
Q  246 ggttttggccttgtccgccctcttcttgtatatatttttcc 286  Q
    |||||||||||  ||| ||||||||||||||||||||||||    
T  40926598 ggttttggcctaatcccccctcttcttgtatatatttttcc 40926558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0195 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold0195
Description:

Target: scaffold0195; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 298 - 373
Target Start/End: Complemental strand, 9076 - 9001
Alignment:
Q  298 aataaaattttaaagtttggcggcataggatggaggtttccagggtgccaacctagttgggatgttggtgtttcct 373  Q
    |||||||||||| |||||| |||||||||| |||||||||| || ||||||||||||||| |||| ||||||||||    
T  9076 aataaaattttagagtttgacggcataggacggaggtttcccggatgccaacctagttggtatgtcggtgtttcct 9001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0195; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 298 - 373
Target Start/End: Complemental strand, 14465 - 14390
Alignment:
Q  298 aataaaattttaaagtttggcggcataggatggaggtttccagggtgccaacctagttgggatgttggtgtttcct 373  Q
    |||||||||||| |||||| |||||||||| |||||||||| || ||||||||||||||| |||| ||||||||||    
T  14465 aataaaattttagagtttgacggcataggacggaggtttcccggatgccaacctagttggtatgtcggtgtttcct 14390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 298 - 380
Target Start/End: Complemental strand, 26954041 - 26953958
Alignment:
Q  298 aataaaattttaaagtttggcggcataggatggaggtttccag-ggtgccaacctagttgggatgttggtgtttccttttgatg 380  Q
    |||||||||||| |||||||||||||| ||||||||||| | | | |||||||||||||||||||| |||||||||| ||||||    
T  26954041 aataaaattttagagtttggcggcatatgatggaggttttctgagatgccaacctagttgggatgtcggtgtttcctcttgatg 26953958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 306 - 380
Target Start/End: Complemental strand, 1051399 - 1051324
Alignment:
Q  306 tttaaagtttggcggcataggatggaggtttccag-ggtgccaacctagttgggatgttggtgtttccttttgatg 380  Q
    |||| ||||||||||| |||||||||||||||| | |||||||||||||||||||||| |||||| ||| ||||||    
T  1051399 tttagagtttggcggcttaggatggaggtttcccgaggtgccaacctagttgggatgtcggtgttccctcttgatg 1051324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 298 - 380
Target Start/End: Original strand, 25760008 - 25760091
Alignment:
Q  298 aataaaattttaaagtttggcggcataggatggagg-tttccagggtgccaacctagttgggatgttggtgtttccttttgatg 380  Q
    ||||| |||||| |||||||| |||||||||||||| |||||   ||||||||||||||||||||| |||||| ||| ||||||    
T  25760008 aataatattttagagtttggcagcataggatggaggttttccgaagtgccaacctagttgggatgtcggtgttgcctcttgatg 25760091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 237 - 362
Target Start/End: Original strand, 40790597 - 40790718
Alignment:
Q  237 tcttctcagggttttggccttgtccgccctcttcttgtatatatttttccnnnnnnnnnnnaataaaattttaaagtttggcggcataggatggaggttt 336  Q
    |||||| ||| ||||||||| |||| |||||||||||||| |||||||||           |||||||||||| | |||| ||||||||||| |||||||    
T  40790597 tcttctgaggattttggcctagtcccccctcttcttgtatgtatttttccttttttt----aataaaattttagaatttgacggcataggattgaggttt 40790692  T
Q  337 ccagggtgccaacctagttgggatgt 362  Q
    || || ||||||||||||||| ||||    
T  40790693 cccggatgccaacctagttggtatgt 40790718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 298 - 380
Target Start/End: Original strand, 51661668 - 51661751
Alignment:
Q  298 aataaaattttaaagtttggcggcataggatggag-gtttccagggtgccaacctagttgggatgttggtgtttccttttgatg 380  Q
    |||||||||||| |||||| ||||||||||||||| |||  | ||||||||||||||||||||||| | |||| ||| ||||||    
T  51661668 aataaaattttagagtttgacggcataggatggagagttctcggggtgccaacctagttgggatgtcgatgttgcctcttgatg 51661751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 311 - 362
Target Start/End: Complemental strand, 16309742 - 16309690
Alignment:
Q  311 agtttggcggcataggatggaggtt-tccagggtgccaacctagttgggatgt 362  Q
    ||||||||||||||||||||||||| ||| |||||||||| ||||||||||||    
T  16309742 agtttggcggcataggatggaggttctccggggtgccaacttagttgggatgt 16309690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 311 - 362
Target Start/End: Complemental strand, 18490736 - 18490684
Alignment:
Q  311 agtttggcggcataggatggaggtt-tccagggtgccaacctagttgggatgt 362  Q
    ||||||||||||||||||||||||| ||| |||||||||| ||||||||||||    
T  18490736 agtttggcggcataggatggaggttctccggggtgccaacttagttgggatgt 18490684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 298 - 380
Target Start/End: Original strand, 18517666 - 18517749
Alignment:
Q  298 aataaaattttaaagtttggcggcataggatggaggtttc-cagggtgccaacctagttgggatgttggtgtttccttttgatg 380  Q
    |||||||||||| |||||| ||||||||||||||| | || | || |||||||||||||||||||| | |||| ||| ||||||    
T  18517666 aataaaattttagagtttgacggcataggatggagctatctcgggatgccaacctagttgggatgtcgatgttgcctcttgatg 18517749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 362
Target Start/End: Original strand, 16037948 - 16038010
Alignment:
Q  301 aaaattttaaagtttggcggcataggatggaggtttc-cagggtgccaacctagttgggatgt 362  Q
    ||||||||| |||||||||||||||||||||||| || | |||| |||||||||||| |||||    
T  16037948 aaaattttagagtttggcggcataggatggaggtctctcggggttccaacctagttgagatgt 16038010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 305 - 362
Target Start/End: Original strand, 26430252 - 26430310
Alignment:
Q  305 ttttaaagtttggcggcataggatggaggt-ttccagggtgccaacctagttgggatgt 362  Q
    ||||| |||||||||||||||||||||||| || | |||||||||||||||| ||||||    
T  26430252 ttttagagtttggcggcataggatggaggtattacggggtgccaacctagttaggatgt 26430310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 371
Target Start/End: Original strand, 10997416 - 10997489
Alignment:
Q  299 ataaaattttaaagtttggcggcataggatggaggtttc-cagggtgccaacctagttgggatgttggtgtttc 371  Q
    ||||||||||| |||||| || |||| || ||||||||| | ||||||||||||| ||||||||| ||||||||    
T  10997416 ataaaattttagagtttgacgacataagacggaggtttctcggggtgccaacctaattgggatgtcggtgtttc 10997489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 2899938 - 2899982
Alignment:
Q  319 ggcataggatggagg-tttccagggtgccaacctagttgggatgt 362  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||    
T  2899938 ggcataggacggaggctttccagggtgccaacctagttgggatgt 2899982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 362
Target Start/End: Complemental strand, 19826489 - 19826437
Alignment:
Q  311 agtttggcggcataggatggaggtttccaggg-tgccaacctagttgggatgt 362  Q
    ||||||||||||||||| |||||||||  ||| ||||||||||||||||||||    
T  19826489 agtttggcggcataggacggaggtttcttggggtgccaacctagttgggatgt 19826437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 380
Target Start/End: Complemental strand, 10623301 - 10623242
Alignment:
Q  322 ataggatggaggtttccaggg-tgccaacctagttgggatgttggtgtttccttttgatg 380  Q
    |||||||||||||| || ||| ||||||||||||| |||||| |||||||||| ||||||    
T  10623301 ataggatggaggttccccggggtgccaacctagttaggatgtcggtgtttcctcttgatg 10623242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 362
Target Start/End: Original strand, 16041497 - 16041555
Alignment:
Q  305 ttttaaagtttggcggcataggatggaggtttc-cagggtgccaacctagttgggatgt 362  Q
    ||||| |||||||||||||||||||||||| || | |||| |||||||||||| |||||    
T  16041497 ttttagagtttggcggcataggatggaggtctctcggggttccaacctagttgagatgt 16041555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 199
Target Start/End: Complemental strand, 1051599 - 1051506
Alignment:
Q  106 cagggttctgtttggttagattcgcttctgacggagctgcacctggacttctttcgtgatagacttggtttgcgtaactacaggtttccttagg 199  Q
    ||||| |||||||||||||||| | | |  | |||| |||| || || ||||||||||||||| | || || | ||||||||||||||||||||    
T  1051599 cagggctctgtttggttagatttgttacccatggagttgcatcttgatttctttcgtgatagagtaggctttcctaactacaggtttccttagg 1051506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 362
Target Start/End: Complemental strand, 47165959 - 47165911
Alignment:
Q  315 tggcggcataggatggaggtttc-cagggtgccaacctagttgggatgt 362  Q
    |||||||||||||||||| | || | |||||||||||||||||||||||    
T  47165959 tggcggcataggatggagttctctcggggtgccaacctagttgggatgt 47165911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 311 - 380
Target Start/End: Complemental strand, 2259474 - 2259404
Alignment:
Q  311 agtttggcggcataggatggaggtttccaggg-tgccaacctagttgggatgttggtgtttccttttgatg 380  Q
    |||||||| ||||||||||||||||||| ||| |||||||||||||||||||| |||||||||| ||||||    
T  2259474 agtttggctgcataggatggaggtttcccgggatgccaacctagttgggatgtcggtgtttcctcttgatg 2259404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 298 - 380
Target Start/End: Complemental strand, 21711628 - 21711545
Alignment:
Q  298 aataaaattttaaagtttggcggcataggatggaggtttccaggg-tgccaacctagttgggatgttggtgtttccttttgatg 380  Q
    |||||| ||||| || |||||||||||||||||||| |||| ||| |||||||||||||||||||| |||||| ||| ||||||    
T  21711628 aataaagttttagagattggcggcataggatggagggttcccggggtgccaacctagttgggatgtcggtgttccctcttgatg 21711545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 298 - 362
Target Start/End: Complemental strand, 19068784 - 19068719
Alignment:
Q  298 aataaaattttaaagtttggcggcataggatggaggtttc-cagggtgccaacctagttgggatgt 362  Q
    |||||| || || ||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  19068784 aataaatttctagagtttggcggcataggatggaggtttctcagggtgccaacctagtttggatgt 19068719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 317 - 380
Target Start/End: Original strand, 15614744 - 15614808
Alignment:
Q  317 gcggcataggatggaggtttccaggg-tgccaacctagttgggatgttggtgtttccttttgatg 380  Q
    ||||||||||||||||| |||| ||| |||||||||||||||||||| |||||| ||| ||||||    
T  15614744 gcggcataggatggagggttcccggggtgccaacctagttgggatgtcggtgttccctcttgatg 15614808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 298 - 380
Target Start/End: Original strand, 4120507 - 4120590
Alignment:
Q  298 aataaaattttaaagtttggcggcataggatggaggtttcc-agggtgccaacctagttgggatgttggtgtttccttttgatg 380  Q
    |||| ||||||| || |||| ||||||| ||| ||| |||| |||||||||||||||||||||||| |||||| ||| ||||||    
T  4120507 aatacaattttagagattggtggcatagaatgaagggttcccagggtgccaacctagttgggatgtcggtgttccctcttgatg 4120590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 362
Target Start/End: Complemental strand, 21027093 - 21027041
Alignment:
Q  311 agtttggcggcataggatggaggtt-tccagggtgccaacctagttgggatgt 362  Q
    |||||||||||||||||||| |||| | | |||||||||||||||||||||||    
T  21027093 agtttggcggcataggatgggggttctgcggggtgccaacctagttgggatgt 21027041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 112 - 195
Target Start/End: Original strand, 4120302 - 4120385
Alignment:
Q  112 tctgtttggttagattcgcttctgacggagctgcacctggacttctttcgtgatagacttggtttgcgtaactacaggtttcct 195  Q
    |||||||||||||||||| | |  |||||| |||| || || |||||||| |||||| | ||||||| ||| ||||||||||||    
T  4120302 tctgtttggttagattcgttgcctacggagatgcatctagatttctttcgggatagagtaggtttgcctaattacaggtttcct 4120385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 197
Target Start/End: Complemental strand, 21711819 - 21711733
Alignment:
Q  112 tctgtttggttagattcgcttc-tgacggagctgcacctggacttctttcgtgatagacttggtttgcgtaactacaggtttcctta 197  Q
    ||||||||||| |||||||| | | |||||| |||| || || |||||||| |||||| | ||||||| ||| ||||||||||||||    
T  21711819 tctgtttggttggattcgctgcctcacggagatgcatctagatttctttcgggatagagtaggtttgcctaattacaggtttcctta 21711733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 380
Target Start/End: Complemental strand, 24765578 - 24765508
Alignment:
Q  311 agtttggcggcataggatggaggtttccaggg-tgccaacctagttgggatgttggtgtttccttttgatg 380  Q
    |||||||| ||||| || |||||||||| ||| |||||| ||||||||||||| ||| |||||| ||||||    
T  24765578 agtttggctgcatatgagggaggtttcccgggatgccaatctagttgggatgtcggtatttcctcttgatg 24765508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 362
Target Start/End: Complemental strand, 34995539 - 34995474
Alignment:
Q  298 aataaaattttaaagtttggcggcataggatggaggtttc-cagggtgccaacctagttgggatgt 362  Q
    |||||| ||||  ||||||| |||||||||||||| | || | |||||||||||||||||||||||    
T  34995539 aataaatttttcgagtttggtggcataggatggagttatctcggggtgccaacctagttgggatgt 34995474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 362
Target Start/End: Original strand, 35341877 - 35341941
Alignment:
Q  298 aataaaattttaaagtttggcggcataggatggaggtttc-cagggtgccaacctagttgggatgt 362  Q
    |||||| ||||  |||||||||||||||||||||||| || | ||||||||| |||||||||||||    
T  35341877 aataaatttttcgagtttggcggcataggatggaggtatctcggggtgccaa-ctagttgggatgt 35341941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 362
Target Start/End: Complemental strand, 5781157 - 5781105
Alignment:
Q  311 agtttggcggcataggatggaggtttccaggg-tgccaacctagttgggatgt 362  Q
    ||||||| ||||||||||||| |||||  ||| ||||||||||||||||||||    
T  5781157 agtttggtggcataggatggaagtttctcgggatgccaacctagttgggatgt 5781105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 362
Target Start/End: Original strand, 11725649 - 11725701
Alignment:
Q  311 agtttggcggcataggatggaggtttc-cagggtgccaacctagttgggatgt 362  Q
    |||||||||||||||||||||||| || | | ||||||||||| |||||||||    
T  11725649 agtttggcggcataggatggaggtctctcggagtgccaacctaattgggatgt 11725701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 362
Target Start/End: Complemental strand, 21877970 - 21877926
Alignment:
Q  319 ggcataggatggaggtttc-cagggtgccaacctagttgggatgt 362  Q
    |||||||||||||||| || | |||||||||||||||||||||||    
T  21877970 ggcataggatggaggtgtctcggggtgccaacctagttgggatgt 21877926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 362
Target Start/End: Complemental strand, 28682830 - 28682782
Alignment:
Q  315 tggcggcataggatggaggtttccaggg-tgccaacctagttgggatgt 362  Q
    |||||||||||||||||||| ||  ||| ||||||||||||||||||||    
T  28682830 tggcggcataggatggaggtctctcgggatgccaacctagttgggatgt 28682782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 338
Target Start/End: Complemental strand, 32038510 - 32038470
Alignment:
Q  298 aataaaattttaaagtttggcggcataggatggaggtttcc 338  Q
    |||||| | ||| ||||||||||||||||||||||||||||    
T  32038510 aataaattattagagtttggcggcataggatggaggtttcc 32038470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 362
Target Start/End: Complemental strand, 39324423 - 39324371
Alignment:
Q  311 agtttggcggcataggatggaggtttccagg-gtgccaacctagttgggatgt 362  Q
    |||||||||| ||||||||||||| ||  || |||||||||||||||||||||    
T  39324423 agtttggcggtataggatggaggtctctcggagtgccaacctagttgggatgt 39324371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0437 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: scaffold0437
Description:

Target: scaffold0437; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 298 - 380
Target Start/End: Original strand, 11402 - 11485
Alignment:
Q  298 aataaaattttaaagtttggcggcataggatggaggtttccaggg-tgccaacctagttgggatgttggtgtttccttttgatg 380  Q
    |||||| ||||| || |||||||||||||||||||| |||| ||| |||||||||||||||||||| |||||| ||| ||||||    
T  11402 aataaagttttagagattggcggcataggatggagggttcccggggtgccaacctagttgggatgtcggtgttccctcttgatg 11485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0437; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 362
Target Start/End: Complemental strand, 14407 - 14355
Alignment:
Q  311 agtttggcggcataggatggaggtttc-cagggtgccaacctagttgggatgt 362  Q
    |||||||||||||||||||||||| || | || ||||||||||||||||||||    
T  14407 agtttggcggcataggatggaggtctctcgggatgccaacctagttgggatgt 14355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0437; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 197
Target Start/End: Original strand, 11195 - 11296
Alignment:
Q  96 tcacgccattcagggttctgtttggttagattcgcttctgacggagctgcacctggacttctttcgtgatagacttggtttgcgtaactacaggtttcct 195  Q
    |||| ||||||| || ||||||||||| |||||||| |  || ||| |||| || || |||||||| |||||| | ||||||  ||| ||||||||||||    
T  11195 tcactccattcatggctctgtttggttggattcgctgcctacagagatgcatctagatttctttcgggatagagtaggtttgtctaattacaggtttcct 11294  T
Q  196 ta 197  Q
    ||    
T  11295 ta 11296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 298 - 380
Target Start/End: Original strand, 2282 - 2365
Alignment:
Q  298 aataaaattttaaagtttggcggcataggatggaggtttccaggg-tgccaacctagttgggatgttggtgtttccttttgatg 380  Q
    |||||| ||||| || |||||||||||||||||||| |||| ||| |||||||||||||||||||| |||||| ||| ||||||    
T  2282 aataaagttttagagattggcggcataggatggagggttcccggggtgccaacctagttgggatgtcggtgttccctcttgatg 2365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 197
Target Start/End: Original strand, 2091 - 2177
Alignment:
Q  112 tctgtttggttagattcgcttc-tgacggagctgcacctggacttctttcgtgatagacttggtttgcgtaactacaggtttcctta 197  Q
    ||||||||||| |||||||| | | |||||| |||| || || |||||||| |||||| | ||||||| ||| ||||||||||||||    
T  2091 tctgtttggttggattcgctgcctcacggagatgcatctagatttctttcgggatagagtaggtttgcctaattacaggtttcctta 2177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 298 - 380
Target Start/End: Complemental strand, 1584 - 1501
Alignment:
Q  298 aataaaattttaaagtttggcggcataggatggaggtttccaggg-tgccaacctagttgggatgttggtgtttccttttgatg 380  Q
    ||||| |||||| |||||||  ||||||||||||||||||| ||| |||||||||||||||||||| |||||| ||| ||||||    
T  1584 aataatattttagagtttggaagcataggatggaggtttcccggggtgccaacctagttgggatgtcggtgttgcctcttgatg 1501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 300 - 362
Target Start/End: Original strand, 100967 - 101029
Alignment:
Q  300 taaaattttaaagtttggcggcataggatggaggtttccagggtgccaacctagttgggatgt 362  Q
    |||||||||| ||||||||||||||||| |||||||||| |||||||||||| ||||| ||||    
T  100967 taaaattttagagtttggcggcataggacggaggtttcccgggtgccaacctggttggaatgt 101029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 298 - 370
Target Start/End: Complemental strand, 15640 - 15567
Alignment:
Q  298 aataaaattttaaagtttggcggcataggatggaggtttcc-agggtgccaacctagttgggatgttggtgttt 370  Q
    |||||||||||| ||||||||||||||||| |||| ||||| ||||||||||||| ||||| |||| |||||||    
T  15640 aataaaattttagagtttggcggcataggacggagatttcctagggtgccaacctggttggaatgtcggtgttt 15567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 362
Target Start/End: Complemental strand, 21947 - 21899
Alignment:
Q  315 tggcggcataggatggaggtttccaggg-tgccaacctagttgggatgt 362  Q
    |||||||||||||||||||| ||  ||| ||||||||||||||||||||    
T  21947 tggcggcataggatggaggtctctcgggatgccaacctagttgggatgt 21899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 317 - 380
Target Start/End: Original strand, 80342 - 80406
Alignment:
Q  317 gcggcataggatggaggtttc-cagggtgccaacctagttgggatgttggtgtttccttttgatg 380  Q
    |||||||||||||||| |||| | ||||||||||||||||||||||||| |||||| | ||||||    
T  80342 gcggcataggatggagatttcgcggggtgccaacctagttgggatgttgctgtttcatgttgatg 80406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0886 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0886
Description:

Target: scaffold0886; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 311 - 380
Target Start/End: Original strand, 2783 - 2853
Alignment:
Q  311 agtttggcggcataggatggaggtttc-cagggtgccaacctagttgggatgttggtgtttccttttgatg 380  Q
    ||||||||||||||||||||||||||| |  ||| |||||||||||||||||| | |||| ||| ||||||    
T  2783 agtttggcggcataggatggaggtttctcgaggtaccaacctagttgggatgtcgatgttgcctcttgatg 2853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 302 - 371
Target Start/End: Complemental strand, 30055 - 29985
Alignment:
Q  302 aaattttaaagtttggcggcataggatggaggtttccaggg-tgccaacctagttgggatgttggtgtttc 371  Q
    |||||||||||| || |||||||||| | |||||| | ||| |||||||||||||||||||| ||||||||    
T  30055 aaattttaaagtctgacggcataggacgaaggttttccgggatgccaacctagttgggatgtcggtgtttc 29985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 298 - 362
Target Start/End: Original strand, 129409 - 129474
Alignment:
Q  298 aataaaattttaaagtttggcggcataggatggaggtttc-cagggtgccaacctagttgggatgt 362  Q
    |||||||||||  ||| ||| |||||||||||||||| || | |||||||||||||||||||||||    
T  129409 aataaaattttcgagtgtggtggcataggatggaggtgtctcggggtgccaacctagttgggatgt 129474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 298 - 362
Target Start/End: Original strand, 307226 - 307291
Alignment:
Q  298 aataaaattttaaagtttggcggcataggatggaggtttc-cagggtgccaacctagttgggatgt 362  Q
    |||||||||||  ||| ||| |||||||||||||||| || | |||||||||||||||||||||||    
T  307226 aataaaattttcgagtgtggtggcataggatggaggtgtctcggggtgccaacctagttgggatgt 307291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0607 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0607
Description:

Target: scaffold0607; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 311 - 357
Target Start/End: Complemental strand, 384 - 337
Alignment:
Q  311 agtttggcggcataggatggaggtttc-cagggtgccaacctagttgg 357  Q
    ||||||||||||||||||||||||||| | ||||||||| ||||||||    
T  384 agtttggcggcataggatggaggtttctcggggtgccaaactagttgg 337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 380
Target Start/End: Complemental strand, 8075 - 8005
Alignment:
Q  311 agtttggcggcataggatggaggtttccaggg-tgccaacctagttgggatgttggtgtttccttttgatg 380  Q
    |||||||| ||||| || |||||||||| ||| |||||| ||||||||||||| ||| |||||| ||||||    
T  8075 agtttggctgcatatgagggaggtttcccgggatgccaatctagttgggatgtcggtatttcctcttgatg 8005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1667 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1667
Description:

Target: scaffold1667; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 362
Target Start/End: Complemental strand, 792 - 728
Alignment:
Q  298 aataaaattttaaagtttggcggcataggatggaggtt-tccagggtgccaacctagttgggatgt 362  Q
    ||||||||||| | |||||||||||||||||||||||| | |  |||||||||||||| |||||||    
T  792 aataaaattttga-gtttggcggcataggatggaggttcttcgaggtgccaacctagtcgggatgt 728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 362
Target Start/End: Original strand, 20847 - 20911
Alignment:
Q  298 aataaaattttaaagtttggcggcataggatggaggtt-tccagggtgccaacctagttgggatgt 362  Q
    ||||||||||| | |||||||||||||||||||||||| | |  |||||||||||||| |||||||    
T  20847 aataaaattttga-gtttggcggcataggatggaggttcttcgaggtgccaacctagtcgggatgt 20911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 362
Target Start/End: Complemental strand, 19637 - 19593
Alignment:
Q  319 ggcataggatggaggtttc-cagggtgccaacctagttgggatgt 362  Q
    |||||||||||||||| || | |||||||||||||||||||||||    
T  19637 ggcataggatggaggtgtctcggggtgccaacctagttgggatgt 19593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 362
Target Start/End: Original strand, 4444 - 4492
Alignment:
Q  315 tggcggcataggatggaggtttccag-ggtgccaacctagttgggatgt 362  Q
    |||||||||||||||||||| ||  | ||||||||||||||||||||||    
T  4444 tggcggcataggatggaggtctctcgaggtgccaacctagttgggatgt 4492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 380
Target Start/End: Original strand, 795 - 835
Alignment:
Q  340 gggtgccaacctagttgggatgttggtgtttccttttgatg 380  Q
    ||||||||||||||||||||||| |||||| ||| ||||||    
T  795 gggtgccaacctagttgggatgtcggtgttgcctcttgatg 835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 362
Target Start/End: Original strand, 2486 - 2534
Alignment:
Q  315 tggcggcataggatggaggtttc-cagggtgccaacctagttgggatgt 362  Q
    |||||||||||||||||| | || | |||||||||||||||||||||||    
T  2486 tggcggcataggatggagatgtctcggggtgccaacctagttgggatgt 2534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 380
Target Start/End: Complemental strand, 36755 - 36679
Alignment:
Q  305 ttttaaagtttggcggcataggatggaggtttc-cagggtgccaacctagttgggatgttggtgtttccttttgatg 380  Q
    ||||| |||||||||||||| | |||||||||| |  ||| |||||||||||||||||| | |||| ||| ||||||    
T  36755 ttttagagtttggcggcataagttggaggtttctcgaggtaccaacctagttgggatgtcgatgttgcctcttgatg 36679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 872 times since January 2019
Visitors: 4356