View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0717_low_6 (Length: 403)
Name: NF0717_low_6
Description: NF0717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0717_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 25 - 383
Target Start/End: Original strand, 36363993 - 36364351
Alignment:
| Q |
25 |
catccaaacgttaaataaggttgagtagaaagtatgaaagcaactactacactcgcatatctagctgtttattgacggaaaaaacatgtgcataaactgc |
124 |
Q |
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| T |
36363993 |
catccaaacgttaaataaggttgagtagaaagcatgaaagcaactactacactcgcatatccagctgtttattgacggaaaaaacatgtgcataaactgc |
36364092 |
T |
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| Q |
125 |
atgtcttgattcgttgcgtcagttatttgggatcaaattataagaattttaataaagttctgtggggtccattataagggtcatgttgtctttgattgca |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
36364093 |
atgtcttgattcgttgcgtcagttatttgggatcaaattataagaattttaataaagttctgtggggtccattataagggtcatgttgtcgtggattgca |
36364192 |
T |
|
| Q |
225 |
atccaggacggtgctatggaccttcaaaatttaaattttcttcacacgacttggtgggttgtaggccaaccttattgacttctaaggctctaaatttcct |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
36364193 |
atccaggacggtgctatggaccttcaaaatttaaattttcttcacacgacttggtgggttgtaggccaaccttattgacttctacggctctaaatttcct |
36364292 |
T |
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| Q |
325 |
ttaatttttacaccttacatttgccatggcgcaattaatgcataatacaatgatgatgt |
383 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36364293 |
ttaatttttacaccttacatttgccatggcgcaattaatgcataatacaatgatgatgt |
36364351 |
T |
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