View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0717_low_9 (Length: 326)
Name: NF0717_low_9
Description: NF0717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0717_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 8e-89; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 120 - 297
Target Start/End: Complemental strand, 2189254 - 2189077
Alignment:
| Q |
120 |
ggctgaaagaaatatctgatttttccaaattgataagttgttcagaagtatatttgtagtgatttaggatattgttcacagtctgagcatcctaataagt |
219 |
Q |
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| T |
2189254 |
ggctgaaagaaatatctgatttttccaaattgataagtagttcagaagtatatttgtagtgatttaggatattgttcacagtctgagcatcctaataagt |
2189155 |
T |
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| Q |
220 |
gttttgcaaatcatcaaactatcatctacaaagaagagacgagtaattcttgtggggctcctacagcaatttgaatac |
297 |
Q |
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| T |
2189154 |
gttttgcaaatcattaaactatcatctacaaagaagagacgagtaattcttgtggggctcctacaacaatttgaatac |
2189077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 2189315 - 2189271
Alignment:
| Q |
45 |
ttgatagcatttatttgcatcaaacctttgtacatggtttttcta |
89 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2189315 |
ttgatagcatttatttgcatcaaaccttggtacatggtttttcta |
2189271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 2189312 - 2189271
Alignment:
| Q |
1 |
atagcatttatttgcatcaaacctttgtacatggtttttcta |
42 |
Q |
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| T |
2189312 |
atagcatttatttgcatcaaaccttggtacatggtttttcta |
2189271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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