View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0718_high_15 (Length: 307)

Name: NF0718_high_15
Description: NF0718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0718_high_15
NF0718_high_15
[»] chr5 (4 HSPs)
chr5 (1-185)||(36607544-36607717)
chr5 (109-244)||(27631838-27631973)
chr5 (223-297)||(36607478-36607553)
chr5 (34-76)||(27631976-27632018)
[»] chr4 (1 HSPs)
chr4 (1-263)||(12888485-12888742)
[»] chr7 (3 HSPs)
chr7 (2-254)||(36934480-36934728)
chr7 (22-132)||(5892663-5892772)
chr7 (139-263)||(5888807-5888932)
[»] chr6 (3 HSPs)
chr6 (5-256)||(22696786-22697031)
chr6 (103-254)||(34501274-34501419)
chr6 (1-100)||(34502714-34502810)
[»] chr3 (1 HSPs)
chr3 (1-259)||(49358794-49359049)
[»] chr2 (1 HSPs)
chr2 (1-246)||(36593140-36593378)
[»] chr8 (3 HSPs)
chr8 (1-246)||(38149108-38149348)
chr8 (1-246)||(32919104-32919341)
chr8 (1-256)||(20519239-20519489)
[»] chr1 (1 HSPs)
chr1 (2-147)||(32946613-32946756)


Alignment Details
Target: chr5 (Bit Score: 131; Significance: 6e-68; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 36607717 - 36607544
Alignment:
Q  1 catcatcatcaccacacccctgaactcaccatcacacgagaaagagacattgaacatttcgcctcccaactcaacatcaaaacaccaccactcgtgatac 100  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  36607717 catcatcatcaccacacccccgaactcactatcacacgagaaagagacattgaacatttcgcctcccaactcaacaccaaaacaccaccactcgtgatac 36607618  T
Q  101 ctatcactaacaaccaccaaaatcaccatcaaatcataaaccatgaccttagatttgaagatcaccacacgtagactgcatcacc 185  Q
    | |||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36607617 ccatcactaacaaccaccaaa-----------atcataaaccatgaccttagatttgaagatcaccacacgtagactgcatcacc 36607544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 109 - 244
Target Start/End: Complemental strand, 27631973 - 27631838
Alignment:
Q  109 aacaaccaccaaaatcaccatcaaatc-ataaaccatgaccttagatttgaagatcaccacacgtagactgcatcaccgccacttagacaccgtccaaga 207  Q
    |||||||||||||||||||||||| || ||||| ||| ||||||||| || ||||||||||| | ||||| ||||||| |||  | |||| |  ||||||    
T  27631973 aacaaccaccaaaatcaccatcaactcaataaatcattaccttagatctg-agatcaccacatgcagactacatcaccaccatgtggacatcacccaaga 27631875  T
Q  208 cagcaacaccacttcctgcatcacctccattcgaaac 244  Q
      ||| ||||||| |||||| ||||||||||| ||||    
T  27631874 tggcatcaccactccctgcaccacctccattcaaaac 27631838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 223 - 297
Target Start/End: Complemental strand, 36607553 - 36607478
Alignment:
Q  223 ctgcatcacctccattcgaaacttaccaaaaa-caacagcaccaccactctgacatcccaaaccgaaacatctctg 297  Q
    ||||||||||||||||| |||||||| ||||| || ||||||||||||| ||||||| | ||||||||| ||||||    
T  36607553 ctgcatcacctccattcaaaacttacaaaaaaacagcagcaccaccactatgacatcaccaaccgaaacgtctctg 36607478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 76
Target Start/End: Complemental strand, 27632018 - 27631976
Alignment:
Q  34 acacgagaaagagacattgaacatttcgcctcccaactcaaca 76  Q
    |||| ||||||||||| ||||||||||||||||||||||||||    
T  27632018 acacaagaaagagacaatgaacatttcgcctcccaactcaaca 27631976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 12888485 - 12888742
Alignment:
Q  1 catcatcatcaccacacccctgaactcaccatcacacgagaaagagacattgaacatttcgcctcccaactcaacatcaaaacaccaccactcgtgatac 100  Q
    |||||||||| ||||||   ||||||||||| ||||| ||||||||||| | |||  ||||||||||||||||||| ||| | ||||||||  |||||||    
T  12888485 catcatcatcgccacact--tgaactcacca-cacacaagaaagagacagtaaac--ttcgcctcccaactcaacaccaaca-accaccacctgtgatac 12888578  T
Q  101 ctatcactaacaaccaccaaaatcaccatcaaatca-taaaccatgaccttagatttgaagatcaccacacgtagactgcatcaccgccacttagacacc 199  Q
    | ||||| ||||||||||||||| |||||||| ||| |||||||||||||||||||||| |||||||||||| ||||||||||||| |||||| |||| |    
T  12888579 ccatcaccaacaaccaccaaaattaccatcaactcaataaaccatgaccttagatttga-gatcaccacacgcagactgcatcaccaccacttggacatc 12888677  T
Q  200 gtccaagacagcaacaccacttcctgcatcacctccattcgaaactt-accaaaaacaacagcac 263  Q
      | ||||||||||||||||| ||||||||||||||||| ||||||| |||||||||| ||||||    
T  12888678 acctaagacagcaacaccactccctgcatcacctccatttgaaacttcaccaaaaacagcagcac 12888742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 7e-52; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 2 - 254
Target Start/End: Original strand, 36934480 - 36934728
Alignment:
Q  2 atcatcatcaccacacccctgaactcaccatcacacgagaaagagacattgaacatttcgcctcccaactcaacatcaaaacaccaccactcgtgatacc 101  Q
    ||||||||| ||||||| | |||||||||| |||| ||   ||||||| |||| ||||||||||||||||||||| |||| |||||||||| ||||||||    
T  36934480 atcatcatcgccacacctccgaactcaccaccacaaga---agagacagtgaatatttcgcctcccaactcaacaccaaa-caccaccacttgtgatacc 36934575  T
Q  102 tatcactaacaaccaccaaaatcaccatcaaatcataaaccatgaccttagatttgaagatcaccacacgtagactgcatcaccgccacttagacaccgt 201  Q
     ||||| ||||||||||||||| ||||||||   ||||||||||||||| ||| |||||||||||||||  || |||||||||| |||||| |||| |      
T  36934576 catcaccaacaaccaccaaaattaccatcaaca-ataaaccatgaccttcgatctgaagatcaccacactcaggctgcatcaccaccacttggacatcac 36934674  T
Q  202 ccaagacagcaacaccacttcctgcatcacctccattcgaaactt-accaaaaa 254  Q
    |||||| |||| ||||||| |||||||||||||| |||||||||| ||||||||    
T  36934675 ccaagatagcagcaccactccctgcatcacctcccttcgaaacttcaccaaaaa 36934728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 132
Target Start/End: Complemental strand, 5892772 - 5892663
Alignment:
Q  22 gaactcaccatcacacgagaaagagacattgaacatttcgcctcccaactcaacatcaaaacaccaccactcgtgatacctatcactaacaaccaccaaa 121  Q
    |||||||| | ||||| ||||||||||| ||||||||||||||||||||| |||| |||| |||||||||| |||||||| ||||||||| | |||||||    
T  5892772 gaactcacaaccacacaagaaagagacagtgaacatttcgcctcccaacttaacaccaaa-caccaccacttgtgatacccatcactaacgaacaccaaa 5892674  T
Q  122 atcaccatcaa 132  Q
    |||||||||||    
T  5892673 atcaccatcaa 5892663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 139 - 263
Target Start/End: Complemental strand, 5888932 - 5888807
Alignment:
Q  139 aaccatgaccttagatttgaagatcaccacacgtagactgcatcaccgccacttagacaccgtccaagacagcaacaccacttcctgcatcacctccatt 238  Q
    ||||| |||||||||| |||||||||||||| | ||||| ||||||| |||||| |||| |  |||||| ||||||||||||   |||| ||||||||||    
T  5888932 aaccacgaccttagatatgaagatcaccacatgcagactacatcaccaccacttggacatcacccaagatagcaacaccactctatgcagcacctccatt 5888833  T
Q  239 cgaaactt-accaaaaacaacagcac 263  Q
    |||||||| |||||||||| ||||||    
T  5888832 cgaaacttcaccaaaaacagcagcac 5888807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 99; Significance: 7e-49; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 5 - 256
Target Start/End: Original strand, 22696786 - 22697031
Alignment:
Q  5 atcatcaccacacccctgaactcaccatcacacgagaaagagacattgaacatttcgcctcccaactcaacatcaaaacaccaccactcgtgatacctat 104  Q
    |||||| |||||||||  ||||||||| ||||| ||||||||||| |||||||||||||||||| || |||| ||| | ||||||||| |||||||| ||    
T  22696786 atcatcgccacacccccaaactcaccaccacacaagaaagagacagtgaacatttcgcctcccagctaaacaccaaca-accaccacttgtgataccgat 22696884  T
Q  105 cactaacaaccaccaaaatcaccatcaaatca-taaaccatgaccttagatttgaagatcaccacacgtagactgcatcaccgccacttagacaccgtcc 203  Q
    ||| ||||||||      |||||||||| ||| ||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||| |  ||    
T  22696885 caccaacaacca------tcaccatcaactcaataatccatgaccttagatctga-gatcaccacacgtagactgcatcaccgccacttggacatcaccc 22696977  T
Q  204 aagacagcaacaccacttcctgcatcacctccattcgaaactt-accaaaaaca 256  Q
    |||||||||||||  || ||| |||||||||||||| |||||| ||||||||||    
T  22696978 aagacagcaacactgctccctacatcacctccattcaaaacttcaccaaaaaca 22697031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 103 - 254
Target Start/End: Complemental strand, 34501419 - 34501274
Alignment:
Q  103 atcactaacaaccaccaaaatcaccatcaaatca-taaaccatgaccttagatttgaagatcaccacacgtagactgcatcaccgccacttagacaccgt 201  Q
    ||||| ||||||||| |||||||||||||| ||| || |||||||||||| ||        ||||||||| ||||||||||||  |||||| |||| |      
T  34501419 atcaccaacaaccactaaaatcaccatcaactcaatataccatgaccttatat--------caccacacgcagactgcatcactaccacttggacatcac 34501328  T
Q  202 ccaagacagcaacaccacttcctgcatcacctccattcgaaactt-accaaaaa 254  Q
    ||||||||||||||||||| ||  ||||||||||||||||||||| ||||||||    
T  34501327 ccaagacagcaacaccactcccaacatcacctccattcgaaacttcaccaaaaa 34501274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 34502810 - 34502714
Alignment:
Q  1 catcatcatcaccacacccctgaactcaccatcacacgagaaagagacattgaacatttcgcctcccaactcaacatcaaaacaccaccactcgtgatac 100  Q
    |||||||||| ||||||||   ||||||||| ||||  ||||||||||| | |||  ||||||||||||||||||| ||| | ||||||||| |||||||    
T  34502810 catcatcatctccacaccctcaaactcaccaccacagaagaaagagacagtaaac--ttcgcctcccaactcaacagcaaca-accaccacttgtgatac 34502714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 7e-49; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 49358794 - 49359049
Alignment:
Q  1 catcatcatcaccacacccctgaactcaccatcacacgagaaagagacattgaacatttcgcctcccaactcaacatcaaaacaccaccactcgtgatac 100  Q
    |||||||||| |||||||||||||||||||  ||||| ||||||||||| |||||||||||||| ||| ||||||| ||||| ||||||||| |||||||    
T  49358794 catcatcatcgccacacccctgaactcaccgccacacaagaaagagacagtgaacatttcgccttccacctcaacaccaaaa-accaccacttgtgatac 49358892  T
Q  101 ctatcactaacaaccaccaaaatcaccatcaa-atcataaaccatgaccttagatttgaagatcaccacacgtagactgcatcaccgccacttagacacc 199  Q
    | ||||| ||||||||||||||||||||| ||  | ||||||||| ||||||||| || | ||||||||||| | |||||||||   |||||| |||| |    
T  49358893 ccatcaccaacaaccaccaaaatcaccatgaacttaataaaccataaccttagatctg-atatcaccacacgcaaactgcatca---ccacttggacatc 49358988  T
Q  200 gtccaagacagcaacaccacttcctgcatcacctccattcgaaactt-accaaaaacaaca 259  Q
      ||||||||| || |||| | ||| |||||||| |||||||||||| |||||||||||||    
T  49358989 acccaagacaggaagaccattccctacatcaccttcattcgaaacttcaccaaaaacaaca 49359049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 36593140 - 36593378
Alignment:
Q  1 catcatcatcaccacacccctgaactcaccatcacacgagaaagagacattgaacatttcgcctcccaactcaacatcaaaacaccaccactcgtgatac 100  Q
    |||||||||| || |||||| |||||| ||| | ||| ||||||||||| | |||  ||||||||||||||||||| |||    |||||||| |||||||    
T  36593140 catcatcatcgccccacccccgaactccccacc-cacaagaaagagacagtaaac--ttcgcctcccaactcaacaccaa----ccaccacttgtgatac 36593232  T
Q  101 ctatcactaacaaccaccaaaatcaccatcaaatca-taaaccatgaccttagatttgaagatcaccacacgtagactgcatcaccgccacttagacacc 199  Q
    | ||||| ||||||||||||||| |||||||| ||| ||| |||||||||||||| ||| |||||||| ||  ||||| ||||||| |||||| |||| |    
T  36593233 ccatcacaaacaaccaccaaaataaccatcaactcaataatccatgaccttagatctga-gatcaccaaacacagactacatcaccaccacttggacatc 36593331  T
Q  200 gtccaagacagcaacaccacttcctgcatcacctccattcgaaactt 246  Q
     ||||| |||||||||||||| |||||||||||||||||||||||||    
T  36593332 atccaaaacagcaacaccactccctgcatcacctccattcgaaactt 36593378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 6e-40; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 38149348 - 38149108
Alignment:
Q  1 catcatcatcaccacacccct-gaactcaccatcacacgagaaagagacattgaacatttcgcctcccaactcaacatcaaaacaccaccactcgtgata 99  Q
    |||||||||| |||||||||  |||||||||| ||||| ||||||||||| | |||  ||||||||||||||||||| |||    |||||||| ||||||    
T  38149348 catcatcatcgccacaccccccgaactcaccaccacacaagaaagagacaataaac--ttcgcctcccaactcaacaccaa----ccaccacttgtgata 38149255  T
Q  100 cctatcactaacaaccaccaaaatcaccatcaaatca-taaaccatgaccttagatttgaagatcaccacacgtagactgcatcaccgccacttagacac 198  Q
    |  ||||| ||||||||||||||| |||||||| ||| |||||||||||||||||| ||| |||||||| ||  ||||||||||||| |||||   |||     
T  38149254 ctcatcaccaacaaccaccaaaataaccatcaactcaataaaccatgaccttagatctga-gatcaccaaacacagactgcatcaccaccactgtcacat 38149156  T
Q  199 cgtccaagacagcaacaccacttcctgcatcacctccattcgaaactt 246  Q
    | ||||| |||| | ||||||| |||||||||||||||||| ||||||    
T  38149155 catccaaaacagaagcaccactccctgcatcacctccattcaaaactt 38149108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 32919341 - 32919104
Alignment:
Q  1 catcatcatcaccacacccctgaactcaccatcacacgagaaagagacattgaacatttcgcctcccaactcaacatcaaaacaccaccactcgtgatac 100  Q
    |||||||||  ||||||||  |||||||||| ||||| ||||||||| | |||||  ||||||||||||||||||| |||    |||||||| |||||||    
T  32919341 catcatcattgccacacccacgaactcaccaccacacaagaaagagatagtgaac--ttcgcctcccaactcaacaccaa----ccaccacttgtgatac 32919248  T
Q  101 ctatcactaacaaccaccaaaatcaccatcaaatc-ataaaccatgaccttagatttgaagatcaccacacgtagactgcatcaccgccacttagacacc 199  Q
    | ||||| |||||||||| |||| |||||||| || |||||  |||||||||||| || ||||||||| ||  ||||||||||||| ||||||  ||| |    
T  32919247 ccatcaccaacaaccacc-aaataaccatcaactcaataaattatgaccttagatatg-agatcaccaaacacagactgcatcaccaccacttgaacatc 32919150  T
Q  200 gtccaagacagcaacaccacttcctgcatcacctccattcgaaactt 246  Q
     ||||| |||||| || |||| | |||||||||||||||||||||||    
T  32919149 atccaaaacagcagca-cactccttgcatcacctccattcgaaactt 32919104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 20519239 - 20519489
Alignment:
Q  1 catcatcatcaccacacccctgaactcaccatcacacgagaaagagacattgaacatttcgcctcccaactcaacatcaaaacaccaccactcgtgatac 100  Q
    |||||||||| ||| ||||| |||||||||| ||||| ||||||||||| | |||  ||||||||||||||||||| ||    |||||||||  ||||||    
T  20519239 catcatcatcgccatacccccgaactcaccaccacacaagaaagagacaataaac--ttcgcctcccaactcaacacca----accaccacttatgatac 20519332  T
Q  101 ctatcactaacaaccaccaaaatcaccatcaa-atcataaaccatgaccttagatttgaagatcaccacacgtagactgcatcaccgccacttagacacc 199  Q
    | ||||| |||||||||||||||| ||||||| |  || |||||||| ||||||| || ||||||| | ||| |||||  |||||| |||||| |||| |    
T  20519333 ccatcaccaacaaccaccaaaatctccatcaacacaatcaaccatgatcttagatctg-agatcacaaaacgcagactcaatcaccaccacttggacatc 20519431  T
Q  200 gtccaagacagcaacaccacttcctgcatcacctccattcgaaactt-accaaaaaca 256  Q
      | || |||||||||| ||| ||| |||||||||||||| |||||| ||||||||||    
T  20519432 acctaaaacagcaacactactccctacatcacctccattcaaaacttcaccaaaaaca 20519489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 147
Target Start/End: Complemental strand, 32946756 - 32946613
Alignment:
Q  2 atcatcatcaccacacccctgaactcaccatcacacgagaaagagacattgaacatttcgcctcccaactcaacatcaaaacaccaccactcgtgatacc 101  Q
    |||||| |||||||||||  |||||||||| ||||| |||||||  |  ||||||||||||||||||| |||||||||| | ||||||||| |||||||     
T  32946756 atcatcgtcaccacacccacgaactcaccaccacacaagaaaga--cggtgaacatttcgcctcccaaatcaacatcaaca-accaccacttgtgataca 32946660  T
Q  102 tatcactaacaaccaccaaaatcaccatcaaatc-ataaaccatgac 147  Q
    |||||| ||||||||||||||| ||||| || || ||||||||||||    
T  32946659 tatcaccaacaaccaccaaaattaccattaactcaataaaccatgac 32946613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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