View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0718_high_16 (Length: 304)
Name: NF0718_high_16
Description: NF0718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0718_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 16 - 297
Target Start/End: Original strand, 39293908 - 39294188
Alignment:
| Q |
16 |
atcatgtattgaatggaagtgagaacaagttacgctcttagattaaacatggagtttcttttgatttcagggaaaacatttccaacacttgatccacgca |
115 |
Q |
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| T |
39293908 |
atcatgtattaaatggaagtgagaacaagttacgctcttagattaaacatggagtt-cttttgatttcagggaaaacatttccaacacttgatccacgca |
39294006 |
T |
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| Q |
116 |
caggggaagtgattgctcacgttgctgaaggtgatgctgaagatattaaccgtgcagtttcagcagctcgtgaggcctttcataatggaccttgacctaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
39294007 |
caggggaagtgattgctcacgttgctgaaggtgatgctgaagatattaaccgtgcagtttcagcagcttgcgaggcctttcataatggaccttgacctaa |
39294106 |
T |
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| Q |
216 |
aatgagtgcttatgtaagcgtttccttcagagtgtcctttcttacatgaacttatatgagttttaaaattacgttgatgatg |
297 |
Q |
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| T |
39294107 |
aatgagtgcttatgtaagcatttccttcagcgtgtcctttcttacatgaacttatatgagttttaaaattacgttgatgatg |
39294188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 183
Target Start/End: Complemental strand, 35212811 - 35212746
Alignment:
| Q |
118 |
ggggaagtgattgctcacgttgctgaaggtgatgctgaagatattaaccgtgcagtttcagcagct |
183 |
Q |
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| T |
35212811 |
ggggaagtgattgctcatgttgctgaaggtgatcaagaagatatcaatcgtgcagtatctgcagct |
35212746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 16 - 297
Target Start/End: Complemental strand, 8357818 - 8357538
Alignment:
| Q |
16 |
atcatgtattgaatggaagtgagaacaagttacgctcttagattaaacatggagtttcttttgatttcagggaaaacatttccaacacttgatccacgca |
115 |
Q |
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| T |
8357818 |
atcatgtattgaatggaagtgagaacaaattacgctcttagattaaacatggagttt-ttttgatttcagggaaaacatttccaacacttgatccacgca |
8357720 |
T |
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| Q |
116 |
caggggaagtgattgctcacgttgctgaaggtgatgctgaagatattaaccgtgcagtttcagcagctcgtgaggcctttcataatggaccttgacctaa |
215 |
Q |
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| T |
8357719 |
caggggaagtgattgctcacgttgctgaaggtgatgctgaagatattaaccgtgcagtttcagcagctcgtgaggcctttcataatggaccttggcctaa |
8357620 |
T |
|
| Q |
216 |
aatgagtgcttatgtaagcgtttccttcagagtgtcctttcttacatgaacttatatgagttttaaaattacgttgatgatg |
297 |
Q |
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| T |
8357619 |
aatgaatgcttatgtaagcatttccttcagagtgtcctttcttacatgaacttatattagttttaaaattacgttgatgatg |
8357538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 16 - 296
Target Start/End: Complemental strand, 44000374 - 44000094
Alignment:
| Q |
16 |
atcatgtattgaatggaagtgagaacaagttacgctcttagattaaacatggagtttcttttgatttcagggaaaacatttccaacacttgatccacgca |
115 |
Q |
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||||| |||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
44000374 |
atcatttattgagtggaagtgagaacaagttaggctcttagattaaacacggagtttcttttgattccagggaaaacatttccaacacttgatccacgca |
44000275 |
T |
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| Q |
116 |
caggggaagtgattgctcacgttgctgaaggtgatgctgaagatattaaccgtgcagtttcagcagctcgtgaggcctttcataatggaccttgacctaa |
215 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
44000274 |
caggggaagtgattgctcatgttgctgaaggtgatgctgaagatattaaccgtgcagtttcagcagctcgtgaggcctttgataatggaccttggcctaa |
44000175 |
T |
|
| Q |
216 |
aatgagtgcttatgtaagcgtttccttcagagtgtcctttcttacatgaacttatatgagttttaaaattacgttgatgat |
296 |
Q |
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||||||||||||||||||| |||||| |||||||||||||||| ||||||||| ||| |||||| || ||||||||||||| |
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| T |
44000174 |
aatgagtgcttatgtaagcatttcctgcagagtgtcctttcttgcatgaacttctattagttttcaatttacgttgatgat |
44000094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 143
Target Start/End: Original strand, 26894376 - 26894437
Alignment:
| Q |
82 |
tcagggaaaacatttccaacacttgatccacgcacaggggaagtgattgctcacgttgctga |
143 |
Q |
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||||| ||||||||||||||| | |||||| | |||||||||||||||||||| |||||||| |
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| T |
26894376 |
tcaggtaaaacatttccaacattggatccaaggacaggggaagtgattgctcatgttgctga |
26894437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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