View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0718_high_18 (Length: 301)
Name: NF0718_high_18
Description: NF0718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0718_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 70 - 285
Target Start/End: Complemental strand, 39293774 - 39293559
Alignment:
| Q |
70 |
atatgcctctttattgagaatacatgataatagttataaaatcaatatctattattccaaaattatagtccagtttggaattatatgcctctttattgag |
169 |
Q |
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| T |
39293774 |
atatgcctctttattgagaatacatgataatagttataaaatcaataactattatcccaaaattataggccaatttgaaaatatatgcctctttattgag |
39293675 |
T |
|
| Q |
170 |
aatacatgataatagttaataaactaagaatgacccctcaaactaaaaactaagaatgagtaaaataggattcaaagttgatttcgcctattttatatga |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39293674 |
aatacatgataatagttaataaactaagaatgacccctcaaaataaaaactaagaatgagtaaaataggattcaaagttgatttcgcctattttatatga |
39293575 |
T |
|
| Q |
270 |
attaattaaattaaag |
285 |
Q |
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|||||||||||||||| |
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| T |
39293574 |
attaattaaattaaag |
39293559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 39293761 - 39293657
Alignment:
| Q |
1 |
ttgagaatacatgataatagttataaaatcaatatctattattccaaaattatagtccagtttggaattatatgcctctttattgagaatacatgataat |
100 |
Q |
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| T |
39293761 |
ttgagaatacatgataatagttataaaatcaataactattatcccaaaattataggccaatttgaaaatatatgcctctttattgagaatacatgataat |
39293662 |
T |
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| Q |
101 |
agtta |
105 |
Q |
| |
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||||| |
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|
| T |
39293661 |
agtta |
39293657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 126; Significance: 5e-65; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 152 - 285
Target Start/End: Original strand, 8357952 - 8358085
Alignment:
| Q |
152 |
atatgcctctttattgagaatacatgataatagttaataaactaagaatgacccctcaaactaaaaactaagaatgagtaaaataggattcaaagttgat |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
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| T |
8357952 |
atatgcctctttattgagaatacatgataatagttaataaactaagaatgacccctcaaaataaaaactaagaatgagtaaaataggattcaaagttggt |
8358051 |
T |
|
| Q |
252 |
ttcgcctattttatatgaattaattaaattaaag |
285 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
8358052 |
ttcgcctattttatatgaattaattaaattaaag |
8358085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 105
Target Start/End: Original strand, 8357952 - 8357987
Alignment:
| Q |
70 |
atatgcctctttattgagaatacatgataatagtta |
105 |
Q |
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|
|||||||||||||||||||||||||||||||||||| |
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|
| T |
8357952 |
atatgcctctttattgagaatacatgataatagtta |
8357987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 213 - 271
Target Start/End: Complemental strand, 10068573 - 10068514
Alignment:
| Q |
213 |
taaaaactaagaatgagtaaaataggattcaaagttgatttcgcctatttt-atatgaat |
271 |
Q |
| |
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||||||||||||||||||||| ||||||||||| ||||||||||| ||||| |||||||| |
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| T |
10068573 |
taaaaactaagaatgagtaaactaggattcaaaattgatttcgccaattttcatatgaat |
10068514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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