View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0718_high_19 (Length: 287)

Name: NF0718_high_19
Description: NF0718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0718_high_19
NF0718_high_19
[»] chr3 (8 HSPs)
chr3 (1-186)||(29822034-29822219)
chr3 (101-152)||(49333873-49333923)
chr3 (103-177)||(54653010-54653085)
chr3 (103-156)||(43102304-43102357)
chr3 (101-196)||(33149973-33150069)
chr3 (101-156)||(47807849-47807904)
chr3 (101-146)||(12992033-12992077)
chr3 (101-146)||(50259425-50259469)
[»] chr5 (3 HSPs)
chr5 (1-100)||(40880222-40880321)
chr5 (101-156)||(1663507-1663562)
chr5 (101-150)||(10084988-10085037)
[»] chr8 (4 HSPs)
chr8 (103-182)||(118777-118856)
chr8 (101-156)||(5777111-5777166)
chr8 (101-146)||(45436181-45436225)
chr8 (112-156)||(7487145-7487188)
[»] chr6 (1 HSPs)
chr6 (149-193)||(24546535-24546579)
[»] chr1 (2 HSPs)
chr1 (103-177)||(3978364-3978439)
chr1 (101-146)||(38961773-38961817)
[»] chr7 (3 HSPs)
chr7 (101-177)||(38407199-38407275)
chr7 (103-156)||(19279339-19279392)
chr7 (101-150)||(25154619-25154668)
[»] chr4 (1 HSPs)
chr4 (101-177)||(26791090-26791166)
[»] chr2 (1 HSPs)
chr2 (103-177)||(34039627-34039702)


Alignment Details
Target: chr3 (Bit Score: 170; Significance: 3e-91; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 29822034 - 29822219
Alignment:
Q  1 agaaaatattcagaaaaacttccggccttcctttcttctttaggagacccatcccttctcgaattggaataatcactacttctctaacaatcatttatca 100  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  29822034 agaaaatattcagaaaaacttccagccttcctttcttttttaggagacccatcccttctcgaattggaataatcactacttctctaacaatcatctatca 29822133  T
Q  101 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttgctgatattgtaatgaagaaatgttcttgtt 186  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29822134 tattgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttgctgatattgtaatgaagaaatgttcttgtt 29822219  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 152
Target Start/End: Original strand, 49333873 - 49333923
Alignment:
Q  101 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgat 152  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  49333873 tgttgttgttgaaattgagatt-gggtgtttgtggttgttgaaaaggttgat 49333923  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 177
Target Start/End: Complemental strand, 54653085 - 54653010
Alignment:
Q  103 ttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttgctgat-attgtaatgaagaaat 177  Q
    ||||||||||||||||| ||| | ||||||||||| |||||||||||| ||||| || | || |||||||||||||    
T  54653085 ttgttgttgaaattgagtttgagatgtttgtggttgttgaaaaggttgttgttgttgttgatggtaatgaagaaat 54653010  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 156
Target Start/End: Complemental strand, 43102357 - 43102304
Alignment:
Q  103 ttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttg 156  Q
    ||||||||||||||| ||||||  ||||||||||| |||||||||||| |||||    
T  43102357 ttgttgttgaaattgggattggaatgtttgtggttgttgaaaaggttgttgttg 43102304  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 196
Target Start/End: Complemental strand, 33150069 - 33149973
Alignment:
Q  101 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttgctgatattgtaatgaagaaa-tgttcttgttgttgatgatg 196  Q
    |||||||||||||||||  |||||||||||| ||||| ||| |||||||| || || || |||||| || || ||| |||| ||||||||| |||||    
T  33150069 tgttgttgttgaaattgccattggggtgtttatggttcttgcaaaggttgctgctgttgttattgtgattaaaaaattgttgttgttgttgttgatg 33149973  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 101 - 156
Target Start/End: Original strand, 47807849 - 47807904
Alignment:
Q  101 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttg 156  Q
    ||||||||||||||||||||||  | ||||||||||| | |||||||||| |||||    
T  47807849 tgttgttgttgaaattgagattaagatgtttgtggttgtcgaaaaggttgttgttg 47807904  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 146
Target Start/End: Original strand, 12992033 - 12992077
Alignment:
Q  101 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaag 146  Q
    |||||||||||||||||||||| |||| ||||||||| ||||||||    
T  12992033 tgttgttgttgaaattgagatt-gggtatttgtggttgttgaaaag 12992077  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 146
Target Start/End: Complemental strand, 50259469 - 50259425
Alignment:
Q  101 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaag 146  Q
    |||||||||||||||||||||| |||| ||||||||| ||||||||    
T  50259469 tgttgttgttgaaattgagatt-gggtatttgtggttgttgaaaag 50259425  T

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Target: chr5 (Bit Score: 72; Significance: 8e-33; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 40880321 - 40880222
Alignment:
Q  1 agaaaatattcagaaaaacttccggccttcctttcttctttaggagacccatcccttctcgaattggaataatcactacttctctaacaatcatttatca 100  Q
    |||||||||||| |||||||| | |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||| |||||    
T  40880321 agaaaatattcataaaaacttacagccttcctttcttctttaggagactcatcccttctcgaattgggataatcactacttctttaacaatcatctatca 40880222  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 156
Target Start/End: Complemental strand, 1663562 - 1663507
Alignment:
Q  101 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttg 156  Q
    ||||||||||||||||||||||| | ||||||||||| ||||||| |||| |||||    
T  1663562 tgttgttgttgaaattgagattgagatgtttgtggttgttgaaaaagttgttgttg 1663507  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 10085037 - 10084988
Alignment:
Q  101 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttg 150  Q
    ||||||||||||||||||||||||  |||| |||||| ||||||||||||    
T  10085037 tgttgttgttgaaattgagattggaatgttcgtggttgttgaaaaggttg 10084988  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 103 - 182
Target Start/End: Original strand, 118777 - 118856
Alignment:
Q  103 ttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttgctgat-attgtaatgaagaaatgttct 182  Q
    ||||| ||||||||||||||||||||||| ||| || ||||||||||||||||| || | ||||| |||||||||| ||||    
T  118777 ttgttattgaaattgagattggggtgtttatgg-ttatgaaaaggttgatgttgttgctaattgtgatgaagaaattttct 118856  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 101 - 156
Target Start/End: Original strand, 5777111 - 5777166
Alignment:
Q  101 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttg 156  Q
    ||||||||||| ||||||||||||| |||||| | || |||||||||||| |||||    
T  5777111 tgttgttgttggaattgagattgggttgtttgagattgttgaaaaggttgttgttg 5777166  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 146
Target Start/End: Original strand, 45436181 - 45436225
Alignment:
Q  101 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaag 146  Q
    |||||||||||||||||||||| |||| ||||||||| ||||||||    
T  45436181 tgttgttgttgaaattgagatt-gggtatttgtggttgttgaaaag 45436225  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 156
Target Start/End: Original strand, 7487145 - 7487188
Alignment:
Q  112 aaattgagattggggtgtttgtggtttttgaaaaggttgatgttg 156  Q
    |||||||||||||||||||| ||| || |||||||||||||||||    
T  7487145 aaattgagattggggtgtttatgg-ttatgaaaaggttgatgttg 7487188  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 149 - 193
Target Start/End: Original strand, 24546535 - 24546579
Alignment:
Q  149 tgatgttgctgatattgtaatgaagaaatgttcttgttgttgatg 193  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||    
T  24546535 tgatgttgctggtattgtgatgaagaaatgttcttgttgttgatg 24546579  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 177
Target Start/End: Complemental strand, 3978439 - 3978364
Alignment:
Q  103 ttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttgctgat-attgtaatgaagaaat 177  Q
    ||||||||||||||||| ||| | ||||||||||| |||||||||||| ||||| || | || |||||||||||||    
T  3978439 ttgttgttgaaattgagtttgagatgtttgtggttgttgaaaaggttgttgttgttgttgatggtaatgaagaaat 3978364  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 146
Target Start/End: Original strand, 38961773 - 38961817
Alignment:
Q  101 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaag 146  Q
    |||||||||||||||||||||| |||| ||||||||| ||||||||    
T  38961773 tgttgttgttgaaattgagatt-gggtatttgtggttgttgaaaag 38961817  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 177
Target Start/End: Original strand, 38407199 - 38407275
Alignment:
Q  101 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttgctgat-attgtaatgaagaaat 177  Q
    |||||||||||||||||||||| ||||| || ||| || ||||||||||||||||| || | ||||| ||||||||||    
T  38407199 tgttgttgttgaaattgagattagggtgattatgg-ttatgaaaaggttgatgttgttgctaattgtgatgaagaaat 38407275  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 156
Target Start/End: Original strand, 19279339 - 19279392
Alignment:
Q  103 ttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttg 156  Q
    |||||||| |||||||| ||| | ||||||||||| |||||||||||| |||||    
T  19279339 ttgttgttaaaattgagtttgagatgtttgtggttgttgaaaaggttgttgttg 19279392  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 150
Target Start/End: Original strand, 25154619 - 25154668
Alignment:
Q  101 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttg 150  Q
    ||||||||||| | |||||||||| |||||||||||| ||||||| ||||    
T  25154619 tgttgttgttggatttgagattggagtgtttgtggttgttgaaaaagttg 25154668  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 177
Target Start/End: Original strand, 26791090 - 26791166
Alignment:
Q  101 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttgctgat-attgtaatgaagaaat 177  Q
    ||||| ||||||||||||||| ||| ||||||||||| |||||||||||| ||||| || | || |||||||||||||    
T  26791090 tgttgctgttgaaattgagat-gggatgtttgtggttgttgaaaaggttgttgttgttgttcatggtaatgaagaaat 26791166  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 103 - 177
Target Start/End: Complemental strand, 34039702 - 34039627
Alignment:
Q  103 ttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttgctgat-attgtaatgaagaaat 177  Q
    ||||||||||||||| ||||||  | ||||||||| |||||||||||| ||||| || | || |||||||||||||    
T  34039702 ttgttgttgaaattgggattggaatatttgtggttgttgaaaaggttgttgttgttgttgatggtaatgaagaaat 34039627  T

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