View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0718_high_20 (Length: 286)
Name: NF0718_high_20
Description: NF0718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0718_high_20 |
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| [»] scaffold0048 (1 HSPs) |
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Alignment Details
Target: scaffold0048 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: scaffold0048
Description:
Target: scaffold0048; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 21 - 274
Target Start/End: Complemental strand, 74830 - 74577
Alignment:
| Q |
21 |
acatcatcactatataaatcgaattaatttcataactcaatgtagtatatgttggcttcttttagacctacaaatatcttaataataaaatgaaatacat |
120 |
Q |
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| T |
74830 |
acatcatcacaatataaatcaaattaatttcacaactcaaagtaatatatgttggcttcttttagacctacaaatatcataataataaaatgaaatatat |
74731 |
T |
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| Q |
121 |
annnnnnnnnatcaatatccaataaattggttcaagaacatattattagactcgacctacatatccctacaccaaagcatataacccaatctaaacataa |
220 |
Q |
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| T |
74730 |
atttttttttatcaatatccaataaattggttcaagaacatattattagactcgaccttcatgtcccaacaccaaagcatataacccaatctaaacataa |
74631 |
T |
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| Q |
221 |
acaatagtctaaacaacttttgagaacaatataacatagattataataattctc |
274 |
Q |
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| T |
74630 |
acaatagtctaaacaacttttgagaacaaaataacatagattacaataattctc |
74577 |
T |
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