View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0718_high_24 (Length: 273)

Name: NF0718_high_24
Description: NF0718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0718_high_24
NF0718_high_24
[»] chr8 (1 HSPs)
chr8 (1-258)||(23134642-23134899)
[»] chr1 (1 HSPs)
chr1 (1-258)||(20282682-20282939)
[»] chr3 (1 HSPs)
chr3 (1-258)||(11894981-11895238)
[»] chr2 (1 HSPs)
chr2 (4-142)||(14655859-14655997)


Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 23134899 - 23134642
Alignment:
Q  1 tagtgttgtcgcccccacacagccacaagaccacaccggaaccgcacgtgccaaaaacaacccaacagttaccaactaaacaaactaccacaaatgaagt 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23134899 tagtgttgtcgcccccacacagccacaagaccacacctgaaccgcacgtgccaaaaacaacccaacagttaccaactaaacaaactaccacaaatgaagt 23134800  T
Q  101 tcaagaaaatgatcccaccttagtcaataatccaacacctgaacccgaccctaattcaagtttcatgctcgccacccccattccaaatgaccaagaagct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23134799 tcaagaaaatgatcccaccttagtcaataatccaacacctgaacccgaccctaattcaagtttcatgctcgccacccccattccaaatgaccaagaagct 23134700  T
Q  201 aaccaccccacaaaagaccaaattggtgaaactagctatcataaggatgatgtccatc 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  23134699 aaccaccccacaaaagaccaaattggtgaaactagctatcataaggatgatgttcatc 23134642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 20282682 - 20282939
Alignment:
Q  1 tagtgttgtcgcccccacacagccacaagaccacaccggaaccgcacgtgccaaaaacaacccaacagttaccaactaaacaaactaccacaaatgaagt 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20282682 tagtgttgtcgcccccacacagccacaagaccacacctgaaccgcacgtgccaaaaacaacccaacagttaccaactaaacaaactaccacaaatgaagt 20282781  T
Q  101 tcaagaaaatgatcccaccttagtcaataatccaacacctgaacccgaccctaattcaagtttcatgctcgccacccccattccaaatgaccaagaagct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20282782 tcaagaaaatgatcccaccttagtcaataatccaacacctgaacccgaccctaattcaagtttcatgctcgccacccccattccaaatgaccaagaagct 20282881  T
Q  201 aaccaccccacaaaagaccaaattggtgaaactagctatcataaggatgatgtccatc 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  20282882 aaccaccccacaaaagaccaaattggtgaaactagctatcataaggatgatgttcatc 20282939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 11894981 - 11895238
Alignment:
Q  1 tagtgttgtcgcccccacacagccacaagaccacaccggaaccgcacgtgccaaaaacaacccaacagttaccaactaaacaaactaccacaaatgaagt 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11894981 tagtgttgtcgcccccacacagccacaagaccacacctgaaccgcacgtgccaaaaacaacccaacagttaccaactaaacaaactaccacaaatgaagt 11895080  T
Q  101 tcaagaaaatgatcccaccttagtcaataatccaacacctgaacccgaccctaattcaagtttcatgctcgccacccccattccaaatgaccaagaagct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  11895081 tcaagaaaatgatcccaccttagtcaataatccaacacctgaacccgacccgaattcaagtttcatgctcgccacccccattctaaatgaccaagaagct 11895180  T
Q  201 aaccaccccacaaaagaccaaattggtgaaactagctatcataaggatgatgtccatc 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  11895181 aaccaccccacaaaagaccaaattggtgaaactagctatcataaggatgatgttcatc 11895238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 4 - 142
Target Start/End: Complemental strand, 14655997 - 14655859
Alignment:
Q  4 tgttgtcgcccccacacagccacaagaccacaccggaaccgcacgtgccaaaaacaacccaacagttaccaactaaacaaactaccacaaatgaagttca 103  Q
    ||||||||||||||| || || |||| |||| || |||||||||||||| |||||||| ||||| ||||||| ||||||||||||||| ||||||| |||    
T  14655997 tgttgtcgcccccactcaaccgcaaggccactcctgaaccgcacgtgcctaaaacaactcaacaattaccaaataaacaaactaccactaatgaagctca 14655898  T
Q  104 agaaaatgatcccaccttagtcaataatccaacacctga 142  Q
    | |||||| |||||   |  ||||||||| |||||||||    
T  14655897 aaaaaatgttcccattgttatcaataatcaaacacctga 14655859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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