View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0718_high_31 (Length: 251)

Name: NF0718_high_31
Description: NF0718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0718_high_31
NF0718_high_31
[»] chr8 (2 HSPs)
chr8 (1-157)||(17863682-17863838)
chr8 (158-230)||(17863869-17863941)
[»] chr4 (3 HSPs)
chr4 (1-151)||(52189403-52189553)
chr4 (158-205)||(52189590-52189637)
chr4 (1-41)||(31410362-31410402)
[»] chr5 (2 HSPs)
chr5 (45-157)||(41162188-41162300)
chr5 (1-41)||(35967577-35967617)
[»] chr2 (1 HSPs)
chr2 (159-219)||(225666-225726)
[»] chr1 (1 HSPs)
chr1 (3-41)||(35062795-35062833)
[»] chr3 (1 HSPs)
chr3 (1-41)||(19810518-19810558)
[»] chr7 (1 HSPs)
chr7 (1-41)||(41740820-41740858)


Alignment Details
Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 17863682 - 17863838
Alignment:
Q  1 tcataccctccatctcaaaacattccaaaagacaaaaataagttctttacaatcattatctctgctctatcaaccatcaagtctgttatctctcaattat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17863682 tcataccctccatctcaaaacattccaaaagacaaaaataagttctttacaatcattatctctgctctatcaaccatcaagtctgttatctctcaattat 17863781  T
Q  101 cgacttaataattgttctctattcttttgcaggaaacaaatgcctaaacttaggtaa 157  Q
    || ||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  17863782 cggcttaataattgttctgtattcttttgcaggaaacaaatgcctaaacttgggtaa 17863838  T

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Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 158 - 230
Target Start/End: Original strand, 17863869 - 17863941
Alignment:
Q  158 atgaagaagtgagcaaaatctaaaacgtcatcaggggtattgaagtcaacgtaagctctagagaatgatgatg 230  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  17863869 atgaagaagtgagcaaaatctaaaacgtcatcgggggtattgaagtcaatgtaagctctagagaatgatgatg 17863941  T

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Target: chr4 (Bit Score: 139; Significance: 8e-73; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 52189403 - 52189553
Alignment:
Q  1 tcataccctccatctcaaaacattccaaaagacaaaaataagttctttacaatcattatctctgctctatcaaccatcaagtctgttatctctcaattat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52189403 tcataccctccatctcaaaacattccaaaagacaaaaataagttctttacaatcattatctctgctctatcaaccatcaagtctgttatctctcaattat 52189502  T
Q  101 cgacttaataattgttctctattcttttgcaggaaacaaatgcctaaactt 151  Q
    ||  |||||||||||||||||||||||| ||||||||||||||||||||||    
T  52189503 cggtttaataattgttctctattcttttacaggaaacaaatgcctaaactt 52189553  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 158 - 205
Target Start/End: Original strand, 52189590 - 52189637
Alignment:
Q  158 atgaagaagtgagcaaaatctaaaacgtcatcaggggtattgaagtca 205  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||    
T  52189590 atgaagaagtgagcaaaatctaaaacgtcatcgggggtattgaagtca 52189637  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 31410402 - 31410362
Alignment:
Q  1 tcataccctccatctcaaaacattccaaaagacaaaaataa 41  Q
    ||||||||||| |||||||||||||||| ||||||||||||    
T  31410402 tcataccctccctctcaaaacattccaagagacaaaaataa 31410362  T

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Target: chr5 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 45 - 157
Target Start/End: Original strand, 41162188 - 41162300
Alignment:
Q  45 ctttacaatcattatctctgctctatcaaccatcaagtctgttatctctcaattatcgacttaataattgttctctattcttttgcaggaaacaaatgcc 144  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  41162188 ctttacaattgttatctctgctctatcaaccatcaagtctgttatctctcaattatcgacataataattgttctctattcttttgcaggaaacaaatgcc 41162287  T
Q  145 taaacttaggtaa 157  Q
    ||||||| |||||    
T  41162288 taaacttgggtaa 41162300  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 35967577 - 35967617
Alignment:
Q  1 tcataccctccatctcaaaacattccaaaagacaaaaataa 41  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  35967577 tcataccctccatctcaaaacattccaaaagacaaaaataa 35967617  T

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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 225726 - 225666
Alignment:
Q  159 tgaagaagtgagcaaaatctaaaacgtcatcaggggtattgaagtcaacgtaagctctaga 219  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  225726 tgaagaagtgagcaaaatctataacgtcatcaggggtattgaagtcaatgtaagctctaga 225666  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 35062795 - 35062833
Alignment:
Q  3 ataccctccatctcaaaacattccaaaagacaaaaataa 41  Q
    |||||||||||||||||||||||||||||||||||||||    
T  35062795 ataccctccatctcaaaacattccaaaagacaaaaataa 35062833  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 19810558 - 19810518
Alignment:
Q  1 tcataccctccatctcaaaacattccaaaagacaaaaataa 41  Q
    ||||||||||| |||||||||||||||| ||||||||||||    
T  19810558 tcataccctccctctcaaaacattccaagagacaaaaataa 19810518  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 41740858 - 41740820
Alignment:
Q  1 tcataccctccatctcaaaacattccaaaagacaaaaataa 41  Q
    ||||||||||||||||||||||||||  |||||||||||||    
T  41740858 tcataccctccatctcaaaacattcc--aagacaaaaataa 41740820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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