View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0718_high_32 (Length: 250)
Name: NF0718_high_32
Description: NF0718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0718_high_32 |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 6e-86; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 34896834 - 34896611
Alignment:
| Q |
1 |
aacaacaacaagcttaacatcaatttaaca--cccaaacttatcatcaaataaggagcacaaaaattgacaatagtcaataaaaatcataaaagttacaa |
98 |
Q |
| |
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||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
34896834 |
aacaacaacaaacttaacatcaatttaacatacccaaacttatcatcaaataaggagcacaaaaattgacaata-------aaattcataaaagttacaa |
34896742 |
T |
|
| Q |
99 |
ttcacaaataagcacttattcgcataagcgaaagaagagattatagcttgattgtaagaaaggtcttatcccccttacctctagctagcttgcataatcc |
198 |
Q |
| |
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||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34896741 |
ttcacaaataagcacttattcacataagcaaaagaagagattatagcttgattgtaagaaaggtcttatcccccttacctct----agcttgcataatcc |
34896646 |
T |
|
| Q |
199 |
tagctatggcttcactttaactcctcaagtctcta |
233 |
Q |
| |
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||||||| ||||||||||||||||||||||||||| |
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| T |
34896645 |
tagctattgcttcactttaactcctcaagtctcta |
34896611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 34134312 - 34134091
Alignment:
| Q |
1 |
aacaacaacaagcttaacatcaatttaaca--cccaaacttatcatcaaataaggagcacaaaaattgacaatagtcaataaaaatcataaaagttacaa |
98 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| || |||||||||| || || ||| |||| | | || |
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| T |
34134312 |
aacaacaacaagcttagcatcaatttaacatacccaaacttatcatcaaataaggagtacgaaaattgacatta-------aagttcacaaaaatcataa |
34134220 |
T |
|
| Q |
99 |
ttcacaaataagcacttattcgcataagcgaaagaagagattatagcttgattgtaagaaaggtcttatcccccttacctctagctagcttgcataatcc |
198 |
Q |
| |
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||||||||||||||||||||| |||||| ||||||||||||||||||| |||| |||||||| |||||||||||||||| |||||||| |||| |
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| T |
34134219 |
ttcacaaataagcacttattcatataagcaaaagaagagattatagcttaattgagagaaaggttatatcccccttacctct----agcttgcaaaatct |
34134124 |
T |
|
| Q |
199 |
tagctatggcttcactttaactcctcaagtctc |
231 |
Q |
| |
|
||||||||||||||||||| |||||| |||||| |
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| T |
34134123 |
tagctatggcttcactttagctcctcgagtctc |
34134091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 10176748 - 10176629
Alignment:
| Q |
1 |
aacaacaacaagcttaacatcaatttaaca--cccaaacttatcatcaaataaggagcacaaaaattgacaatagtcaataaaaatcataaaagttacaa |
98 |
Q |
| |
|
||||||||||| ||||||||||| |||||| |||||| ||||||| |||||||||||||||||||||| || ||||| ||| |||||| |||| |
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|
| T |
10176748 |
aacaacaacaaacttaacatcaaattaacatacccaaatttatcattaaataaggagcacaaaaattga-------cattaaaattcacaaaagtcacaa |
10176656 |
T |
|
| Q |
99 |
ttcacaaataagcacttattcgcataa |
125 |
Q |
| |
|
|||||||||||||| |||||||||||| |
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| T |
10176655 |
ttcacaaataagcatttattcgcataa |
10176629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 21254966 - 21255025
Alignment:
| Q |
1 |
aacaacaacaagcttaacatcaatttaac--acccaaacttatcatcaaataaggagcac |
58 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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|
| T |
21254966 |
aacaacaacaagcttaacatcaatttaacatacccaaatttatcatcaaataaggagcac |
21255025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 6228827 - 6228760
Alignment:
| Q |
1 |
aacaacaacaagcttaacatcaatttaaca--cccaaacttatcatcaaataaggagcacaaaaattga |
67 |
Q |
| |
|
|||||||||||||||||||| ||||||||| | |||||||||||||| ||| ||||||||||||||| |
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|
| T |
6228827 |
aacaacaacaagcttaacat-aatttaacatactcaaacttatcatcacttaaagagcacaaaaattga |
6228760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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