View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0718_high_4 (Length: 488)
Name: NF0718_high_4
Description: NF0718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0718_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 24 - 440
Target Start/End: Complemental strand, 48119004 - 48118577
Alignment:
| Q |
24 |
tcatcaccacagcttcaacaggagcttttctcattctgggagcgtaaatcgtagctaccacatgttattggaatctgactcattaacaggatcctctcat |
123 |
Q |
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| T |
48119004 |
tcatcaccacagcttcaacaggagcttttctcattctgggagcgtaaatcgtagttaccacatgttattggaatctgactcattaacaggatcctctcat |
48118905 |
T |
|
| Q |
124 |
agaagaaccaggtctgattttcagcaacccacaactgagttcttagagcacagatttggtgttgatggaagtttggttagccccagaggcatcactgcga |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
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| T |
48118904 |
agaagaaccaggtctgattttcagcaacccacaactgagttcttagagcacagatttggtgttgatggaagtttggttagcccaagaggcatcactgtga |
48118805 |
T |
|
| Q |
224 |
cagctctgcctccgaccactgccaatgctgttgcttcttatgctatccaaccaccctcaaagaatttcaacaacgttcgcaaacacaaatgatata--ta |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
48118804 |
cagctctgcctccgaccactgccaatgctgttgcttcttatgctacccaaccaccctcaaagaatttcaacaacgttcgcaaacacaaatgatatatata |
48118705 |
T |
|
| Q |
322 |
taacatcctaggtggtgttcaactttccatattttcaaaag----------nnnnnnnnncttttgggacttgtagattttgattttgtatttctcttct |
411 |
Q |
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|||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
48118704 |
taacatcctagggggtgttcaactttccata-tttcaaaagaaaaagaaaaaaaaaaaaacttttgggacttgtagattttgattttgtatttctcttct |
48118606 |
T |
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| Q |
412 |
caggtttgattcatttgattaagatgatg |
440 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
48118605 |
caggtttgattcatttgattaagatgatg |
48118577 |
T |
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