View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0718_low_11 (Length: 434)
Name: NF0718_low_11
Description: NF0718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0718_low_11 |
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| [»] scaffold0432 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 395
Target Start/End: Complemental strand, 9805069 - 9804675
Alignment:
| Q |
1 |
agaaatccatctgtggataataaattaaaataaaatccatgtatttattacatagtatgatgtttgaaaccactcacataaaagacaaccacaaattaga |
100 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
9805069 |
agaaatccatgtgtggataataaattaaaataaaatccatgtatttattacatagtatgatgtttgaaaccactcacataaaagacaaccacaaatttga |
9804970 |
T |
|
| Q |
101 |
gaaagacatgcaaaatgatcaagatnnnnnnntatatgaaaaaagtttggattaccttttttgcccaaataatgaaacgaggttgaagtttcatgaaaac |
200 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
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| T |
9804969 |
gaaagacatgcaaaatgatctagataaaaaaa-atatgaaaaaagtttggattacctttcttgcccaaataatgaaacgaggttgaactttcatgaaaac |
9804871 |
T |
|
| Q |
201 |
tccatcaaaagagataaccattcatgagaggttggcaacggcgactggtcgatgtcgatctcagtgaagtttcatggttcttttttctgat-gatgtcca |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| | |
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| T |
9804870 |
tccatcaaaagagataaccattcatgagaggttggcaacggcgactgatcgatgtcgatctcagtgaagtttcatggttcttttttctgatcgatgtcga |
9804771 |
T |
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| Q |
300 |
tctcattgctggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatgagaaatgaggatgggagga |
395 |
Q |
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| T |
9804770 |
tctcagtgatggtgcttggagagaggttggcaacagcgattgagggagaaaattgtgtttagggtttcaagagaatgagaaatgaggatgggagga |
9804675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 9817994 - 9817777
Alignment:
| Q |
1 |
agaaatccatctgtggataataaattaaaataaaatccatgtatttattacatagtatgatgtttgaaaccactcacataaaagacaaccacaaattaga |
100 |
Q |
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|||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||| |
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| T |
9817994 |
agaaatccatgtgtagataataaattaaaataaaatccatgtatttatcacatagtatgatgtttgaaatcactcacataaaagacaaccacaaatcaga |
9817895 |
T |
|
| Q |
101 |
gaaagacatgcaaaatgatcaagatnnnnnnntatatgaaaaaagtttggattaccttttttgcccaaataatgaaacgaggttgaagtttcatgaaaac |
200 |
Q |
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|||||||||||||||||||| |||| || || ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
9817894 |
gaaagacatgcaaaatgatctagataaaaaa--atgtggaaaaagttttgattaccttttttgcccaaataatggaacgaggttgaagtttcatgaaaat |
9817797 |
T |
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| Q |
201 |
tccatcaaaagagataacca |
220 |
Q |
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|||||||||||||||||||| |
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| T |
9817796 |
tccatcaaaagagataacca |
9817777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 315 - 422
Target Start/End: Complemental strand, 9817658 - 9817550
Alignment:
| Q |
315 |
taggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatgagaaatgaggatgggaggattattttgtttga-tgatg |
413 |
Q |
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|||||||||||||| |||||||| |||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
9817658 |
taggagagaggttgtcaacggcggatgagggggaaaattgtgtttagggtttcaagataatgagaaatgaggatgggaggattcttttgtttgattgatg |
9817559 |
T |
|
| Q |
414 |
tccatctca |
422 |
Q |
| |
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|| |||||| |
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| T |
9817558 |
tcgatctca |
9817550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 309 - 409
Target Start/End: Complemental strand, 9817545 - 9817445
Alignment:
| Q |
309 |
tggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatgagaaatgaggatgggaggattattttgtttga |
408 |
Q |
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||||| ||||||||||||||||| | ||| |||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||| ||||| |||| |
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| T |
9817545 |
tggtggtaggagagaggttggcagcagcggctgagggagaaaactttgtttagggtttcaaaagaatgagaaatgaggattggaggattcttttgattga |
9817446 |
T |
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| Q |
409 |
t |
409 |
Q |
| |
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| |
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| T |
9817445 |
t |
9817445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 309 - 395
Target Start/End: Complemental strand, 9817427 - 9817341
Alignment:
| Q |
309 |
tggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatgagaaatgaggatgggagga |
395 |
Q |
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||||| || |||||||||||||| ||||| |||||||||||| | ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
9817427 |
tggtggtatgagagaggttggcagcggcggctgagggagaaaactgtgtttagggtttctagagaatgagaaatgaggatgggagga |
9817341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 9806742 - 9806792
Alignment:
| Q |
19 |
aataaattaaaataaaatccatgtatttattacatagtatgatgtttgaaa |
69 |
Q |
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| T |
9806742 |
aataaaataaaataaaatccatgtatttattacatagtatgatgtttgaaa |
9806792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432 (Bit Score: 113; Significance: 4e-57; HSPs: 3)
Name: scaffold0432
Description:
Target: scaffold0432; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 17 - 217
Target Start/End: Complemental strand, 11987 - 11788
Alignment:
| Q |
17 |
ataataaattaaaataaaatccatgtatttattacatagtatgatgtttgaaaccactcacataaaagacaaccacaaattagagaaagacatgcaaaat |
116 |
Q |
| |
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|||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
11987 |
ataataaaataaaataaaattcatgtatttattacatagtatgatgtttgaaatcactcacataaaagacaaccacaaatcagataaagacatgcaaaat |
11888 |
T |
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| Q |
117 |
gatcaagatnnnnnnntatatg-aaaaaagtttggattaccttttttgcccaaataatgaaacgaggttgaagtttcatgaaaactccatcaaaagagat |
215 |
Q |
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| T |
11887 |
tatatagataaaaca--atgtgaaaaaaagttaagattaccttttatgcccaattaatgaaacgaggttgaagtttcatgaaaactccatcaaaagagat |
11790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 409
Target Start/End: Complemental strand, 11672 - 11572
Alignment:
| Q |
309 |
tggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatgagaaatgaggatgggaggattattttgtttga |
408 |
Q |
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||||| || |||||||||||| | ||| ||||| || |||| ||||||| | | |||||||||||| ||| |||||||||||||||| |||||||||| |
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| T |
11672 |
tggtggtatgagagaggttggtagcgggagttgagagataaaactttgttttgagattcaagagaatgggaagtgaggatgggaggattcttttgtttga |
11573 |
T |
|
| Q |
409 |
t |
409 |
Q |
| |
|
| |
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|
| T |
11572 |
t |
11572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 395
Target Start/End: Complemental strand, 11543 - 11467
Alignment:
| Q |
319 |
agagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatgagaaatgaggatgggagga |
395 |
Q |
| |
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||||||||||||| || || ||||||||||| | ||| | || ||||| |||||| ||||||||||||||||||| |
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| T |
11543 |
agagaggttggcagcgacggccgagggagaaaactgtgtgtgggatttcatgagaataagaaatgaggatgggagga |
11467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 66 - 220
Target Start/End: Original strand, 42778749 - 42778900
Alignment:
| Q |
66 |
gaaaccactcacataaaagacaaccacaaattagagaaagacatgcaaaatgatcaagatnnnnnnntatatgaaaaaagtttggattaccttttttgcc |
165 |
Q |
| |
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||||||||||| ||||||| ||||||||||| | |||||| | |||||||||||| |||| || |||||||||||||||||||||||||||| |
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| T |
42778749 |
gaaaccactcatataaaaggcaaccacaaatcaaagaaaggcgtgcaaaatgatctagataaagaa--atgtgaaaaaagtttggattaccttttttgct |
42778846 |
T |
|
| Q |
166 |
caaataatgaaacgaggttgaagtttcatgaaaactccatcaaaagagataacca |
220 |
Q |
| |
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||| | |||||||||||||||| || |||||||||||| |||||||||||||||| |
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| T |
42778847 |
caattgatgaaacgaggttgaa-ttgcatgaaaactccgtcaaaagagataacca |
42778900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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