View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0718_low_12 (Length: 430)
Name: NF0718_low_12
Description: NF0718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0718_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 103 - 232
Target Start/End: Original strand, 29009143 - 29009272
Alignment:
| Q |
103 |
taatcaagaagttgaagcgaacatatatgatctttgcgcggttgaagagtttgttatgaattcagaacagagaatttggttatgtacctgcaaattcaga |
202 |
Q |
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| T |
29009143 |
taatcaagaagttgaagcgaacctatatgatctttgcgcggttgaagagtttgttatgaattcagaacagagaatgtggttatgtacctgcaaattcaga |
29009242 |
T |
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| Q |
203 |
aagtgaaatctcagagcaatgaagaagaag |
232 |
Q |
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| T |
29009243 |
aagtgaaatctcagagcaatgaagaagaag |
29009272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 328 - 403
Target Start/End: Original strand, 29009481 - 29009556
Alignment:
| Q |
328 |
agggttttcgcgcctttatacagagtgatgagaattttggtttcgttttctgttatggagagtaaacttgtctgtg |
403 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
29009481 |
agggttttcgcgcctttatacagagtgatgagaattttggtttcgttttctgttacggagagtaaacttgtctgtg |
29009556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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