View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0718_low_13 (Length: 427)
Name: NF0718_low_13
Description: NF0718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0718_low_13 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 71 - 427
Target Start/End: Original strand, 5051987 - 5052342
Alignment:
| Q |
71 |
atcacgaggagaagattgaggggacatgacatttgatacctattagttgtgtactttaaccccctcattccctttacttactgccatgttcataggccac |
170 |
Q |
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| T |
5051987 |
atcacgaggagaagattgaggggacatgacatttgatatctattagttgtgtactttaaccccctcattccctttacttactgccatgttcataggccac |
5052086 |
T |
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| Q |
171 |
tcttaaagatagtgaggttcaaagtattgacattgccaagaaggcgtttacaggaatgtgagtttggattggaatattcagtgaacattgaagacaatag |
270 |
Q |
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| T |
5052087 |
tctcaaagacagtgaggttcaatgtattgacattgccaagaaggcgtttacaggaatgtgagtttggattggaa-attcagtgaacatttaagacaatag |
5052185 |
T |
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| Q |
271 |
taccttggtttcaaatgttttatggtcatgacgtaggcatgatctcatcaaatttggatatgttttaatgttttgcattgacttaactagtcaatgttnn |
370 |
Q |
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| T |
5052186 |
taccttggtttcagatgttttatggtcatgacgtaggcatgatctcatcaaatttggatatgttttaatgctttgcattgacttaactagtcaatgttaa |
5052285 |
T |
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| Q |
371 |
nnnnnttgattataatatacaatatggatttcaaatatagtagttaatatcaaattt |
427 |
Q |
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| T |
5052286 |
aaaatttgattataatatacaatatggctttcaaatatagtagttaatatcaaattt |
5052342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 270 - 349
Target Start/End: Original strand, 5048194 - 5048273
Alignment:
| Q |
270 |
gtaccttggtttcaaatgttttatggtcatgacgtaggcatgatctcatcaaatttggatatgttttaatgttttgcatt |
349 |
Q |
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| T |
5048194 |
gtaccttagtttcaaatgtttgactgttctgacttggtcatgatctcatcaaatttggatatgttttaatgctttgcatt |
5048273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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