View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0718_low_16 (Length: 400)

Name: NF0718_low_16
Description: NF0718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0718_low_16
NF0718_low_16
[»] chr4 (14 HSPs)
chr4 (1-356)||(2381241-2381598)
chr4 (2-358)||(2390873-2391225)
chr4 (1-296)||(2380046-2380334)
chr4 (159-292)||(2376161-2376294)
chr4 (153-229)||(2460589-2460665)
chr4 (163-218)||(2367678-2367733)
chr4 (154-283)||(2547525-2547654)
chr4 (243-283)||(2360929-2360969)
chr4 (164-219)||(6007668-6007723)
chr4 (154-228)||(2472085-2472159)
chr4 (32-144)||(2382562-2382676)
chr4 (160-226)||(2467529-2467595)
chr4 (154-220)||(2486300-2486366)
chr4 (1-34)||(2376407-2376440)
[»] chr1 (2 HSPs)
chr1 (115-229)||(15837954-15838068)
chr1 (171-225)||(9581944-9581998)
[»] chr8 (2 HSPs)
chr8 (159-254)||(39516855-39516950)
chr8 (164-209)||(32152209-32152254)
[»] chr5 (3 HSPs)
chr5 (164-213)||(32268773-32268822)
chr5 (164-219)||(17205959-17206014)
chr5 (164-209)||(41900267-41900312)
[»] chr3 (1 HSPs)
chr3 (164-208)||(513446-513490)
[»] chr7 (1 HSPs)
chr7 (173-219)||(15091356-15091402)
[»] chr6 (2 HSPs)
chr6 (164-209)||(7993319-7993364)
chr6 (166-207)||(28935578-28935619)


Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 2381598 - 2381241
Alignment:
Q  1 ttgaggtctaaagggaaagcggagatttgggtaagaagcatgttggggtgattgtgtagagaaaagtaagtgaggttgctggatgcga--ttgagggatg 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  2381598 ttgaggtctaaagggaaagcggagatttgggtaagaagcatgttggggtgattgtgtagagaaaagtaagtgaggttgctggatgcgagattgagggatg 2381499  T
Q  99 tgacattagagaagcgttggaagagttgaggaatgaaagggctggtttgtagggtgattttgacggagaatcggagactgttggtgatcgagagtaactg 198  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2381498 tgacactagagaagcgttggaagagttgaggaatgaaagggatggtttgtagggtgattttgacggagaatcggagactgttggtgatcgagagtaactg 2381399  T
Q  199 tttggagacgatggaaagagacttgaaagtgcagtggtctccattgaggaatttgatgatgtattcccatagctcatctggtaaacttgaacacgctttt 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2381398 tttggagacgatggaaagagacttgaaagtgcagtggtctccattgaggaatttgatgatgtattcccataggtcatctggtaaacttgaacacgctttt 2381299  T
Q  299 gctgttgctgctgccgcggccattctttttggaaccttggatttggatgatgatgatg 356  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2381298 gctgttgctgctgccgctgccattctttttggaaccttggatttggatgatgatgatg 2381241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 2 - 358
Target Start/End: Complemental strand, 2391225 - 2390873
Alignment:
Q  2 tgaggtctaaagggaaagcggagatttgggtaagaagcatgttggggtgattgtgtagagaaaagtaagtgaggttgctggatgcga--ttgagggatgt 99  Q
    ||||| |||||||||||| ||||||||||||||||||| |||||||| |||||  | |||| |||||| |||||||| |||||| ||  |||||||||||    
T  2391225 tgaggactaaagggaaagtggagatttgggtaagaagcgtgttggggcgattgcattgagagaagtaattgaggttggtggatgtgagattgagggatgt 2391126  T
Q  100 gacattagagaagcgttggaagagttgaggaatgaaagggctggtttgtagggtgattttgacggagaatcggagactgttggtgatcgagagtaactgt 199  Q
    |||||||||||| |||||||||| |||||||||||||||| |||||||| |||||||||||| ||||||||||||| |||||||||| |||||||| |||    
T  2391125 gacattagagaaccgttggaagatttgaggaatgaaagggatggtttgttgggtgattttgatggagaatcggagattgttggtgatggagagtaattgt 2391026  T
Q  200 ttggagacgatggaaagagacttgaaagtgcagtggtctccattgaggaatttgatgatgtattcccatagctcatctggtaaacttgaacacgcttttg 299  Q
    || |||||||| |||||||||||||||||  |||||||| |||  ||||||||||||||||||||||| | ||||||||||||| |||||||| ||||||    
T  2391025 ttcgagacgatagaaagagacttgaaagtatagtggtcttcatcaaggaatttgatgatgtattcccacaactcatctggtaaatttgaacactcttttg 2390926  T
Q  300 ctgttgctgctgccgcggccattctttttggaaccttggatttggatgatgatgatgtc 358  Q
    ||||      | |||| |||||  |||||||||||||||||||||||||||||| ||||    
T  2390925 ctgt------ttccgctgccatcgtttttggaaccttggatttggatgatgatgctgtc 2390873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 2380334 - 2380046
Alignment:
Q  1 ttgaggtctaaagggaaagcggagatttgggtaagaagcatgttggggtgattgtgtagagaaaagtaagtgaggttgctgga--tgcgattgagggatg 98  Q
    ||||| |||||||| |||||||||||||| ||||||||| ||||| |||||||||         | | || ||||||| ||||  || ||||||||||||    
T  2380334 ttgagatctaaaggtaaagcggagatttgtgtaagaagcgtgttgaggtgattgt---------attgagggaggttgatggatgtgagattgagggatg 2380244  T
Q  99 tgacattagagaagcgttggaagagttgaggaatgaaagggctggtttgtagggtgattttgacggagaatcggagactgttggtgatcgagagtaactg 198  Q
    |||  |||    | | ||| |||||  ||||||| |||||| |||||||| |||||||||||| || |||||||| ||||| ||||||||||||||||||    
T  2380243 tgatgttacgacacctttgcaagaggcgaggaataaaagggatggtttgttgggtgattttgagggtgaatcggaaactgtaggtgatcgagagtaactg 2380144  T
Q  199 tttggagacgatggaaagagacttgaaagtgcagtggtctccattgaggaatttgatgatgtattcccatagctcatctggtaaacttgaacacgctt 296  Q
    |||||||||||||||||||||||||| ||| |||||||||||||  ||||||||||||||||||||||||| ||||||||||||| ||||||| ||||    
T  2380143 tttggagacgatggaaagagacttgacagtacagtggtctccatcaaggaatttgatgatgtattcccataactcatctggtaaatttgaacatgctt 2380046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 159 - 292
Target Start/End: Complemental strand, 2376294 - 2376161
Alignment:
Q  159 tgacggagaatcggagactgttggtgatcgagagtaactgtttggagacgatggaaagagacttgaaagtgcagtggtctccattgaggaatttgatgat 258  Q
    |||| |||||||||| || ||||||||| ||||| ||   ||||||||||||||| |||||||| |||| |  || ||| ||   |||||||||||||||    
T  2376294 tgaccgagaatcggaaacggttggtgatggagagaaaagttttggagacgatggagagagacttcaaagaggggttgtcgccggcgaggaatttgatgat 2376195  T
Q  259 gtattcccatagctcatctggtaaacttgaacac 292  Q
    ||||||||||| ||||| |||||||  |||||||    
T  2376194 gtattcccataactcatatggtaaatatgaacac 2376161  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 153 - 229
Target Start/End: Original strand, 2460589 - 2460665
Alignment:
Q  153 tgattttgacggagaatcggagactgttggtgatcgagagtaactgtttggagacgatggaaagagacttgaaagtg 229  Q
    |||||||||  |||||||||||||  |||||||| ||||| |||||||||||||| ||||| ||||| |||||||||    
T  2460589 tgattttgagagagaatcggagacgattggtgatggagaggaactgtttggagaccatggagagagatttgaaagtg 2460665  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 163 - 218
Target Start/End: Complemental strand, 2367733 - 2367678
Alignment:
Q  163 ggagaatcggagactgttggtgatcgagagtaactgtttggagacgatggaaagag 218  Q
    |||||||||||||| ||||||||| ||||| || ||||||||||||||||||||||    
T  2367733 ggagaatcggagacggttggtgatggagagaaattgtttggagacgatggaaagag 2367678  T

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Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 283
Target Start/End: Original strand, 2547525 - 2547654
Alignment:
Q  154 gattttgacggagaatcggagactgttggtgatcgagagtaactgtttggagacgatggaaagagacttgaaagtgcagtggtctccattgaggaatttg 253  Q
    |||| |||| ||||| ||||||| ||||||||| || || |||||||||||||||||||| || || || |||| |   | ||   ||||||||||||||    
T  2547525 gattgtgactgagaaccggagacggttggtgatggacagaaactgtttggagacgatggagagcgattttaaagcgtcctcgtagacattgaggaatttg 2547624  T
Q  254 atgatgtattcccatagctcatctggtaaa 283  Q
    | |||||  ||||||| |||||||||||||    
T  2547625 aagatgtgctcccataactcatctggtaaa 2547654  T

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Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 243 - 283
Target Start/End: Complemental strand, 2360969 - 2360929
Alignment:
Q  243 tgaggaatttgatgatgtattcccatagctcatctggtaaa 283  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  2360969 tgaggaatttgatgatgtgttcccatagctcatctggtaaa 2360929  T

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Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 219
Target Start/End: Original strand, 6007668 - 6007723
Alignment:
Q  164 gagaatcggagactgttggtgatcgagagtaactgtttggagacgatggaaagaga 219  Q
    ||||||||||||||||||||||| ||||| |||||||| ||||||| ||| |||||    
T  6007668 gagaatcggagactgttggtgatggagaggaactgtttcgagacgagggagagaga 6007723  T

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Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 228
Target Start/End: Original strand, 2472085 - 2472159
Alignment:
Q  154 gattttgacggagaatcggagactgttggtgatcgagagtaactgtttggagacgatggaaagagacttgaaagt 228  Q
    |||| ||| |||||||| |||||  |||||||| ||||  |||||||||||||| ||||||||||| ||||||||    
T  2472085 gattgtgagggagaatcagagacgattggtgatggagaaaaactgtttggagaccatggaaagagatttgaaagt 2472159  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 32 - 144
Target Start/End: Complemental strand, 2382676 - 2382562
Alignment:
Q  32 taagaagcatgttggggtgattgtgtagagaaaagtaagtgaggttgctggatgcgat--tgagggatgtgacattagagaagcgttggaagagttgagg 129  Q
    |||||||| ||||| ||| ||||| | |||| |||| ||||||||||  ||||| |||  |||||||||||||||||| ||  | | |||||||  ||||    
T  2382676 taagaagcgtgttgaggtaattgtattgagagaagtgagtgaggttgagggatgtgatattgagggatgtgacattagggagccttcggaagaggcgagg 2382577  T
Q  130 aatgaaagggctggt 144  Q
    |||||||||| ||||    
T  2382576 aatgaaagggatggt 2382562  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 226
Target Start/End: Original strand, 2467529 - 2467595
Alignment:
Q  160 gacggagaatcggagactgttggtgatcgagagtaactgtttggagacgatggaaagagacttgaaa 226  Q
    |||||||||||| ||||||||||| || || |  |||||||| ||||||| ||| ||||||||||||    
T  2467529 gacggagaatcgaagactgttggtaatggacaaaaactgttttgagacgacggagagagacttgaaa 2467595  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 220
Target Start/End: Original strand, 2486300 - 2486366
Alignment:
Q  154 gattttgacggagaatcggagactgttggtgatcgagagtaactgtttggagacgatggaaagagac 220  Q
    |||| |||| ||||||||||||| ||||||||| || || |||||||| ||||||| ||| ||||||    
T  2486300 gattgtgaccgagaatcggagacggttggtgatggacagaaactgttttgagacgagggagagagac 2486366  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 2376440 - 2376407
Alignment:
Q  1 ttgaggtctaaagggaaagcggagatttgggtaa 34  Q
    ||||||||||||||||||| ||||||||||||||    
T  2376440 ttgaggtctaaagggaaagtggagatttgggtaa 2376407  T

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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 115 - 229
Target Start/End: Complemental strand, 15838068 - 15837954
Alignment:
Q  115 ttggaagagttgaggaatgaaagggctggtttgtagggtgattttgacggagaatcggagactgttggtgatcgagagtaactgtttggagacgatggaa 214  Q
    ||||||||| | ||||||||||||| | |||||     ||||||||| |||||||||||||| ||||||||| ||||| |||||||||||||| || ||     
T  15838068 ttggaagaggttaggaatgaaagggattgtttgatctatgattttgagggagaatcggagacggttggtgatggagagaaactgtttggagaccatcgag 15837969  T
Q  215 agagacttgaaagtg 229  Q
    || ||||||||||||    
T  15837968 agggacttgaaagtg 15837954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 9581944 - 9581998
Alignment:
Q  171 ggagactgttggtgatcgagagtaactgtttggagacgatggaaagagacttgaa 225  Q
    |||||| ||||||||| ||||| ||||||||||||||||  ||||||||||||||    
T  9581944 ggagaccgttggtgatagagagaaactgtttggagacgacagaaagagacttgaa 9581998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 159 - 254
Target Start/End: Original strand, 39516855 - 39516950
Alignment:
Q  159 tgacggagaatcggagactgttggtgatcgagagtaactgtttggagacgatggaaagagacttgaaagtgcagtggtctccattgaggaatttga 254  Q
    |||||||||||| ||||| ||||||||| | ||| || ||| ||||||||||||| |||||||||||||||  || ||| || | |||||||||||    
T  39516855 tgacggagaatctgagacggttggtgatggcgagaaattgtctggagacgatggagagagacttgaaagtgtggttgtcaccgtcgaggaatttga 39516950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 32152209 - 32152254
Alignment:
Q  164 gagaatcggagactgttggtgatcgagagtaactgtttggagacga 209  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||    
T  32152209 gagaatcggagactgttggtgatggagaggaactgtttggagacga 32152254  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 213
Target Start/End: Original strand, 32268773 - 32268822
Alignment:
Q  164 gagaatcggagactgttggtgatcgagagtaactgtttggagacgatgga 213  Q
    |||||||| |||| ||||||||| ||||||||||||||||||||||||||    
T  32268773 gagaatcgaagacggttggtgatggagagtaactgtttggagacgatgga 32268822  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 219
Target Start/End: Original strand, 17205959 - 17206014
Alignment:
Q  164 gagaatcggagactgttggtgatcgagagtaactgtttggagacgatggaaagaga 219  Q
    |||||||||| ||||| |||||| |||||||||||||||||||||| ||| |||||    
T  17205959 gagaatcggaaactgtcggtgatagagagtaactgtttggagacgagggatagaga 17206014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 41900312 - 41900267
Alignment:
Q  164 gagaatcggagactgttggtgatcgagagtaactgtttggagacga 209  Q
    |||||||| ||| |||||||||| ||||| ||||||||||||||||    
T  41900312 gagaatcgaagagtgttggtgatggagagaaactgtttggagacga 41900267  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 513490 - 513446
Alignment:
Q  164 gagaatcggagactgttggtgatcgagagtaactgtttggagacg 208  Q
    |||||||||||| |||||||||| |||||||||||||| ||||||    
T  513490 gagaatcggagattgttggtgatggagagtaactgttttgagacg 513446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 219
Target Start/End: Complemental strand, 15091402 - 15091356
Alignment:
Q  173 agactgttggtgatcgagagtaactgtttggagacgatggaaagaga 219  Q
    |||||||||||||| ||||| |||||||||||||||| ||| |||||    
T  15091402 agactgttggtgatggagaggaactgtttggagacgagggagagaga 15091356  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 7993364 - 7993319
Alignment:
Q  164 gagaatcggagactgttggtgatcgagagtaactgtttggagacga 209  Q
    ||||||||||||| | ||||||| ||||| ||||||||||||||||    
T  7993364 gagaatcggagacggctggtgatggagaggaactgtttggagacga 7993319  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 207
Target Start/End: Original strand, 28935578 - 28935619
Alignment:
Q  166 gaatcggagactgttggtgatcgagagtaactgtttggagac 207  Q
    ||||||||||||||||||||| ||||| |||||||| |||||    
T  28935578 gaatcggagactgttggtgatagagaggaactgtttcgagac 28935619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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