View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0718_low_18 (Length: 392)
Name: NF0718_low_18
Description: NF0718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0718_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 22 - 385
Target Start/End: Original strand, 49642613 - 49642976
Alignment:
| Q |
22 |
catcatcactatcttcctcctcctcttgaatccaaccaaatccgaagaaaataaaaaccttaaatcaacaacaacagaaaatgagtgcgaacaacgttgg |
121 |
Q |
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| T |
49642613 |
catcatcactatcttcctcctcctcttgaatccaaccaaatccgaagaaaataaaaaccttaaatcaacaacaacagaaaatgagtgcgaacaacgttgg |
49642712 |
T |
|
| Q |
122 |
atccacataagaaaattaccaccaaaattcaacctagatctactctcaaattgttcagaatacacattcctagacgatttatgtccttacttagcaaacc |
221 |
Q |
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| T |
49642713 |
atccacataagaaaattaccaccaaaattcaacctagatctactctcaaattgttcagaatacacattcctagacgatttatgtccttacttagcaaacc |
49642812 |
T |
|
| Q |
222 |
atggtttgggtcaaaaaacccataaccgttcccatagttggtaccgaaccgacccatccatgcttgaactcattttccatcgtcgtatgttagaatatcc |
321 |
Q |
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| T |
49642813 |
atggtttgggtcaaaaaacccataaccgttcccatagttggtaccgaaccgacccatccatgcttgaactcattttccatcgtcgtatgttagaatatcc |
49642912 |
T |
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| Q |
322 |
atgcttaacggaagatcctaaaaccgctaacgccgtttatcttccttactacgctgcctatgat |
385 |
Q |
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| T |
49642913 |
atgcttaacggaagatcctaaaaccgctaacgccgtttatcttccttactacgctgcctttgat |
49642976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 236 - 339
Target Start/End: Complemental strand, 6623275 - 6623170
Alignment:
| Q |
236 |
aaaacccataaccgttcccatagttggtaccgaaccgacccatccatgcttgaactcattttccatcgtcgtatgtt-agaatat--ccatgcttaacgg |
332 |
Q |
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| T |
6623275 |
aaaacccataacagttcccatagttgacaca-aatcgacccatacatgcttgaactcatattcaatccccgtatgttaagaatatccccatgcttaacaa |
6623177 |
T |
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| Q |
333 |
aagatcc |
339 |
Q |
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||||||| |
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| T |
6623176 |
aagatcc |
6623170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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