View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0718_low_19 (Length: 392)
Name: NF0718_low_19
Description: NF0718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0718_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 56 - 203
Target Start/End: Original strand, 25286446 - 25286593
Alignment:
| Q |
56 |
atgaagtactgacaaagtcccaatagccaaaagtcgctgaatgggatcaaaagcgagaactgaagaagaagatggaatgccatagtgaagcacaattctt |
155 |
Q |
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| T |
25286446 |
atgaagtactgacaaagtcccaatagccaaaagtcgctgaatgggatcaaaagcgagaactgaagaagaagatggaatgccatagtgaatcacaattctt |
25286545 |
T |
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| Q |
156 |
ggatccaattcagttgattgtaaactaccttgctgctgaaacttgtgc |
203 |
Q |
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| T |
25286546 |
ggatccaattcagttgattgtaaactaccttgctgctgaaacttgtgc |
25286593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 281 - 371
Target Start/End: Original strand, 25286671 - 25286761
Alignment:
| Q |
281 |
catggtttttatttgtttcttacgttgtaatggtgttgcacagctttgtgtaacaatctcttcgcaaacatggtttgatgaattgatgatg |
371 |
Q |
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| T |
25286671 |
catggtttttatttgtttcttacgttgtaatggtgttgcacagctttgtgtaacaatctcttagcaaacatggtttgatgaattgatgatg |
25286761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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