View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0718_low_2 (Length: 651)

Name: NF0718_low_2
Description: NF0718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0718_low_2
NF0718_low_2
[»] chr8 (6 HSPs)
chr8 (325-651)||(11056424-11056750)
chr8 (25-159)||(11056096-11056230)
chr8 (615-651)||(16210933-16210969)
chr8 (532-568)||(40280191-40280227)
chr8 (522-567)||(11415224-11415269)
chr8 (529-565)||(30918184-30918220)
[»] chr7 (7 HSPs)
chr7 (41-158)||(29769708-29769825)
chr7 (529-568)||(19022546-19022585)
chr7 (104-158)||(29769164-29769218)
chr7 (538-567)||(3804405-3804434)
chr7 (530-570)||(22387859-22387899)
chr7 (532-568)||(23214924-23214960)
chr7 (522-562)||(44151431-44151471)
[»] chr2 (2 HSPs)
chr2 (521-568)||(27699483-27699530)
chr2 (522-567)||(9478369-9478414)
[»] chr5 (2 HSPs)
chr5 (523-565)||(37611171-37611213)
chr5 (523-565)||(37787901-37787943)
[»] chr3 (6 HSPs)
chr3 (529-567)||(2321248-2321286)
chr3 (529-568)||(24281116-24281155)
chr3 (529-568)||(25182949-25182988)
chr3 (534-568)||(29600702-29600736)
chr3 (522-568)||(49605806-49605852)
chr3 (531-568)||(40880912-40880949)
[»] chr4 (5 HSPs)
chr4 (614-651)||(10192271-10192308)
chr4 (522-568)||(27123307-27123353)
chr4 (531-568)||(2841695-2841732)
chr4 (532-568)||(2996642-2996678)
chr4 (532-568)||(27330040-27330076)
[»] chr1 (7 HSPs)
chr1 (529-568)||(4033979-4034018)
chr1 (533-568)||(7356504-7356539)
chr1 (614-651)||(7218120-7218157)
chr1 (535-568)||(45234262-45234295)
chr1 (615-651)||(23902114-23902150)
chr1 (483-519)||(28075827-28075863)
chr1 (614-650)||(33976674-33976710)
[»] chr6 (3 HSPs)
chr6 (522-568)||(2460106-2460152)
chr6 (527-572)||(10452389-10452434)
chr6 (536-568)||(32577955-32577987)
[»] scaffold0116 (1 HSPs)
scaffold0116 (614-651)||(18015-18052)
[»] scaffold0049 (1 HSPs)
scaffold0049 (530-567)||(58125-58162)


Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-172; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 325 - 651
Target Start/End: Original strand, 11056424 - 11056750
Alignment:
Q  325 gtaaagggtagtccttaaactgtgttgtacttctttttaatttcttgtacttttggatcatctgaatttggaagcaaggaagaagttgtagtttttgcta 424  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11056424 gtaaagggtagtccttaaactgtgttgtacttctttttaatttcttgtacttttggatcatctgaatttggaagcaaggaagaagttgcagtttttgcta 11056523  T
Q  425 caaattaggcgtttcttgttgatttggatttaagtgtgaagtggggctgttacttcatttagggtttatttagattgacttatttgagcttatctggtaa 524  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  11056524 caaattaggcgtttcttgttgatttggatttaagtgtgaagcggggctgttacttcatttagggtttatttagattgacttatttgagcttatatggtaa 11056623  T
Q  525 gtagttgtgagattgtttgagagagtttatgaaaacaacttatggcttcccataacctcatttcagcttacttccatatcctttttaggggataggtttt 624  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  11056624 gtagttgtgagattgtttgagagagtttatgaaaacaacttatggcttcccataacctcatttcagcttacttccatatcctatttaggggataggtttt 11056723  T
Q  625 gaaaacaacttataacttatatgaaaa 651  Q
    |||||||||||||| ||||||||||||    
T  11056724 gaaaacaacttatagcttatatgaaaa 11056750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 25 - 159
Target Start/End: Original strand, 11056096 - 11056230
Alignment:
Q  25 catcagaggaataccaactcatggtggaaggtatttgcagtacaatatctatggtaacctctttgaggtttctagaaagtatgtccctcctattcgtcct 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  11056096 catcagaggaataccaactcatggtggaaggtatttgcagtacaatatctatggtaacctctttgaggtttctagaaagtatgttcctcctattcgtcct 11056195  T
Q  125 gtcggtagaggtgcttatggtattgtttggtaagc 159  Q
    |||||||||||||||||||||||||||||||||||    
T  11056196 gtcggtagaggtgcttatggtattgtttggtaagc 11056230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 615 - 651
Target Start/End: Original strand, 16210933 - 16210969
Alignment:
Q  615 gataggttttgaaaacaacttataacttatatgaaaa 651  Q
    |||||||||||||||||||||||| ||||||||||||    
T  16210933 gataggttttgaaaacaacttatagcttatatgaaaa 16210969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 532 - 568
Target Start/End: Original strand, 40280191 - 40280227
Alignment:
Q  532 tgagattgtttgagagagtttatgaaaacaacttatg 568  Q
    |||||||||||||||||||||||| ||||||||||||    
T  40280191 tgagattgtttgagagagtttatggaaacaacttatg 40280227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 522 - 567
Target Start/End: Complemental strand, 11415269 - 11415224
Alignment:
Q  522 taagtagttgtgagattgtttgagagagtttatgaaaacaacttat 567  Q
    |||||| |||||||||||||| |||||||||||| ||||| |||||    
T  11415269 taagtacttgtgagattgttttagagagtttatggaaacagcttat 11415224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 529 - 565
Target Start/End: Complemental strand, 30918220 - 30918184
Alignment:
Q  529 ttgtgagattgtttgagagagtttatgaaaacaactt 565  Q
    |||||||| |||||||||||| |||||||||||||||    
T  30918220 ttgtgagactgtttgagagagcttatgaaaacaactt 30918184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 41 - 158
Target Start/End: Complemental strand, 29769825 - 29769708
Alignment:
Q  41 actcatggtggaaggtatttgcagtacaatatctatggtaacctctttgaggtttctagaaagtatgtccctcctattcgtcctgtcggtagaggtgctt 140  Q
    |||||||||||| | ||| | ||||||||||||||||||||  | ||||| || ||||  |||||||||||||||||||||||| | || ||||| ||||    
T  29769825 actcatggtggacgctatgttcagtacaatatctatggtaatttatttgaagtgtctaacaagtatgtccctcctattcgtcctattggaagaggagctt 29769726  T
Q  141 atggtattgtttggtaag 158  Q
    |||||||||| |||||||    
T  29769725 atggtattgtctggtaag 29769708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 529 - 568
Target Start/End: Original strand, 19022546 - 19022585
Alignment:
Q  529 ttgtgagattgtttgagagagtttatgaaaacaacttatg 568  Q
    ||||||||||||||| |||| |||||||||||||||||||    
T  19022546 ttgtgagattgtttgggagaatttatgaaaacaacttatg 19022585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 29769218 - 29769164
Alignment:
Q  104 tatgtccctcctattcgtcctgtcggtagaggtgcttatggtattgtttggtaag 158  Q
    |||||||||||||||||| |||| || ||||| |||||||||||| | |||||||    
T  29769218 tatgtccctcctattcgttctgttggaagaggagcttatggtattttctggtaag 29769164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 538 - 567
Target Start/End: Complemental strand, 3804434 - 3804405
Alignment:
Q  538 tgtttgagagagtttatgaaaacaacttat 567  Q
    ||||||||||||||||||||||||||||||    
T  3804434 tgtttgagagagtttatgaaaacaacttat 3804405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 530 - 570
Target Start/End: Original strand, 22387859 - 22387899
Alignment:
Q  530 tgtgagattgtttgagagagtttatgaaaacaacttatggc 570  Q
    ||||||| |||||| ||||| ||||||||||||||||||||    
T  22387859 tgtgagactgtttgggagagcttatgaaaacaacttatggc 22387899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 532 - 568
Target Start/End: Complemental strand, 23214960 - 23214924
Alignment:
Q  532 tgagattgtttgagagagtttatgaaaacaacttatg 568  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  23214960 tgagactgtttgagagaatttatgaaaacaacttatg 23214924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 522 - 562
Target Start/End: Original strand, 44151431 - 44151471
Alignment:
Q  522 taagtagttgtgagattgtttgagagagtttatgaaaacaa 562  Q
    |||||| |||||||||| |||||||||| ||||||||||||    
T  44151431 taagtacttgtgagattatttgagagagcttatgaaaacaa 44151471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 521 - 568
Target Start/End: Original strand, 27699483 - 27699530
Alignment:
Q  521 gtaagtagttgtgagattgtttgagagagtttatgaaaacaacttatg 568  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||    
T  27699483 gtaagtatttgtgagactgtttgagagagtttatgaaaacaacttatg 27699530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 522 - 567
Target Start/End: Complemental strand, 9478414 - 9478369
Alignment:
Q  522 taagtagttgtgagattgtttgagagagtttatgaaaacaacttat 567  Q
    |||||| ||||| || |||||||||||||||||| |||||||||||    
T  9478414 taagtacttgtgtgactgtttgagagagtttatgcaaacaacttat 9478369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 523 - 565
Target Start/End: Original strand, 37611171 - 37611213
Alignment:
Q  523 aagtagttgtgagattgtttgagagagtttatgaaaacaactt 565  Q
    ||||| ||||||||||||||||||||| |||||||||||||||    
T  37611171 aagtacttgtgagattgtttgagagagcttatgaaaacaactt 37611213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 523 - 565
Target Start/End: Original strand, 37787901 - 37787943
Alignment:
Q  523 aagtagttgtgagattgtttgagagagtttatgaaaacaactt 565  Q
    ||||| ||||||||||||||||||||| |||||||||||||||    
T  37787901 aagtacttgtgagattgtttgagagagcttatgaaaacaactt 37787943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 529 - 567
Target Start/End: Complemental strand, 2321286 - 2321248
Alignment:
Q  529 ttgtgagattgtttgagagagtttatgaaaacaacttat 567  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  2321286 ttgtgagattgtttgagagagtttatggaaacaacttat 2321248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 529 - 568
Target Start/End: Complemental strand, 24281155 - 24281116
Alignment:
Q  529 ttgtgagattgtttgagagagtttatgaaaacaacttatg 568  Q
    ||||| ||||||||||||||| ||||||||||||||||||    
T  24281155 ttgtgtgattgtttgagagagcttatgaaaacaacttatg 24281116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 529 - 568
Target Start/End: Original strand, 25182949 - 25182988
Alignment:
Q  529 ttgtgagattgtttgagagagtttatgaaaacaacttatg 568  Q
    |||||||| |||||||||||| ||||||||||||||||||    
T  25182949 ttgtgagactgtttgagagagcttatgaaaacaacttatg 25182988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 534 - 568
Target Start/End: Original strand, 29600702 - 29600736
Alignment:
Q  534 agattgtttgagagagtttatgaaaacaacttatg 568  Q
    ||||||||||||||||||||||||||||| |||||    
T  29600702 agattgtttgagagagtttatgaaaacaatttatg 29600736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 522 - 568
Target Start/End: Original strand, 49605806 - 49605852
Alignment:
Q  522 taagtagttgtgagattgtttgagagagtttatgaaaacaacttatg 568  Q
    |||||| |||||||| |||||||||||||| ||| ||||||||||||    
T  49605806 taagtacttgtgagagtgtttgagagagttcatggaaacaacttatg 49605852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 531 - 568
Target Start/End: Original strand, 40880912 - 40880949
Alignment:
Q  531 gtgagattgtttgagagagtttatgaaaacaacttatg 568  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  40880912 gtgagactgtttgagagagcttatgaaaacaacttatg 40880949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 614 - 651
Target Start/End: Complemental strand, 10192308 - 10192271
Alignment:
Q  614 ggataggttttgaaaacaacttataacttatatgaaaa 651  Q
    |||||| |||||||||||||||||||||||||||||||    
T  10192308 ggatagcttttgaaaacaacttataacttatatgaaaa 10192271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 522 - 568
Target Start/End: Original strand, 27123307 - 27123353
Alignment:
Q  522 taagtagttgtgagattgtttgagagagtttatgaaaacaacttatg 568  Q
    |||||| |||||||| |||||||||||| ||||| ||||||||||||    
T  27123307 taagtacttgtgagactgtttgagagagcttatggaaacaacttatg 27123353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 531 - 568
Target Start/End: Complemental strand, 2841732 - 2841695
Alignment:
Q  531 gtgagattgtttgagagagtttatgaaaacaacttatg 568  Q
    ||||||||||||| |||||||||||||| |||||||||    
T  2841732 gtgagattgtttgcgagagtttatgaaagcaacttatg 2841695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 532 - 568
Target Start/End: Complemental strand, 2996678 - 2996642
Alignment:
Q  532 tgagattgtttgagagagtttatgaaaacaacttatg 568  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  2996678 tgagactgtttgagagagcttatgaaaacaacttatg 2996642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 532 - 568
Target Start/End: Original strand, 27330040 - 27330076
Alignment:
Q  532 tgagattgtttgagagagtttatgaaaacaacttatg 568  Q
    ||||||||||||||||  |||||||||||||||||||    
T  27330040 tgagattgtttgagaggatttatgaaaacaacttatg 27330076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 529 - 568
Target Start/End: Original strand, 4033979 - 4034018
Alignment:
Q  529 ttgtgagattgtttgagagagtttatgaaaacaacttatg 568  Q
    ||||||||||||||||||||| ||||||||| ||||||||    
T  4033979 ttgtgagattgtttgagagagcttatgaaaataacttatg 4034018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 533 - 568
Target Start/End: Original strand, 7356504 - 7356539
Alignment:
Q  533 gagattgtttgagagagtttatgaaaacaacttatg 568  Q
    |||||||||||||||||||||| |||||||||||||    
T  7356504 gagattgtttgagagagtttataaaaacaacttatg 7356539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 614 - 651
Target Start/End: Original strand, 7218120 - 7218157
Alignment:
Q  614 ggataggttttgaaaacaacttataacttatatgaaaa 651  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  7218120 ggataggttatgaaaacaacttatagcttatatgaaaa 7218157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 568
Target Start/End: Complemental strand, 45234295 - 45234262
Alignment:
Q  535 gattgtttgagagagtttatgaaaacaacttatg 568  Q
    ||||| ||||||||||||||||||||||||||||    
T  45234295 gattgattgagagagtttatgaaaacaacttatg 45234262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 615 - 651
Target Start/End: Original strand, 23902114 - 23902150
Alignment:
Q  615 gataggttttgaaaacaacttataacttatatgaaaa 651  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  23902114 gatagcttttgaaaacaacttatagcttatatgaaaa 23902150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 483 - 519
Target Start/End: Complemental strand, 28075863 - 28075827
Alignment:
Q  483 ttagggtttatttagattgacttatttgagcttatct 519  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  28075863 ttagggttaatttagaatgacttatttgagcttatct 28075827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 614 - 650
Target Start/End: Complemental strand, 33976710 - 33976674
Alignment:
Q  614 ggataggttttgaaaacaacttataacttatatgaaa 650  Q
    |||||||||  ||||||||||||||||||||||||||    
T  33976710 ggataggttaagaaaacaacttataacttatatgaaa 33976674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 522 - 568
Target Start/End: Original strand, 2460106 - 2460152
Alignment:
Q  522 taagtagttgtgagattgtttgagagagtttatgaaaacaacttatg 568  Q
    |||||| |||||||| |||||||||||| ||||| ||||||||||||    
T  2460106 taagtacttgtgagactgtttgagagagcttatggaaacaacttatg 2460152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 527 - 572
Target Start/End: Original strand, 10452389 - 10452434
Alignment:
Q  527 agttgtgagattgtttgagagagtttatgaaaacaacttatggctt 572  Q
    |||||||| | |||||||||||||||||| ||||||||||| ||||    
T  10452389 agttgtgatactgtttgagagagtttatggaaacaacttatagctt 10452434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 536 - 568
Target Start/End: Original strand, 32577955 - 32577987
Alignment:
Q  536 attgtttgagagagtttatgaaaacaacttatg 568  Q
    |||||||||||||| ||||||||||||||||||    
T  32577955 attgtttgagagagcttatgaaaacaacttatg 32577987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 614 - 651
Target Start/End: Original strand, 18015 - 18052
Alignment:
Q  614 ggataggttttgaaaacaacttataacttatatgaaaa 651  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  18015 ggatagtttttgaaaacaacttataatttatatgaaaa 18052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 530 - 567
Target Start/End: Original strand, 58125 - 58162
Alignment:
Q  530 tgtgagattgtttgagagagtttatgaaaacaacttat 567  Q
    |||||||||| | |||||||||||||||||||||||||    
T  58125 tgtgagattgctcgagagagtttatgaaaacaacttat 58162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1366 times since January 2019
Visitors: 4368