View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0718_low_20 (Length: 390)
Name: NF0718_low_20
Description: NF0718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0718_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 30 - 383
Target Start/End: Complemental strand, 8249482 - 8249127
Alignment:
| Q |
30 |
cattactcaagtacacgcagagtgggtatttataaggaggggtccagaatttggaggatgccatcgatattatcttattttctgactcatttcttggacc |
129 |
Q |
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| T |
8249482 |
cattactcaagtacacgcagagtgggtatttataaggaggggtccagaatttggaggatgccatcgatattatcttattttctgactcatttcttggacc |
8249383 |
T |
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| Q |
130 |
aaactgtgatatcaatacta-ctatagaaaaaacctgtgacagtgata-caatacactggtccaatattttcttccgatggttgctttatattttatttc |
227 |
Q |
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| T |
8249382 |
aaactgtgatatcaatactacctatagaaaaaacctgtgacagtgatatcaatacactggtccaatattttcttccgatggttgctttatattttatttc |
8249283 |
T |
|
| Q |
228 |
aaactaatctttctataagagtagcaatattgatcaaagagtagcgatttgttaacttcaaagaagaagnnnnnnngagtggatacgaaaagactaattt |
327 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
8249282 |
aaactactctttctataagagtagcaatattgatcaaagagtagcgatttgttaacttcaaagaagaagaaaaaaagagtggatacgaaaagactaattt |
8249183 |
T |
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| Q |
328 |
tagacacaaaattgatttttacatgcatgtttgagggatgtcgattagaataattt |
383 |
Q |
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| T |
8249182 |
tagacacaaaattgatttttacatgcatgtttgagggatgtcgattagaataattt |
8249127 |
T |
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