View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0718_low_23 (Length: 380)
Name: NF0718_low_23
Description: NF0718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0718_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 128; Significance: 4e-66; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 28 - 159
Target Start/End: Original strand, 32505756 - 32505887
Alignment:
| Q |
28 |
caacaacaacaataattcagacgattcaacatccgaaagcaccgccaacaacaacaataactcagatgaatcaacgtccgaaagcacaaccaacaacaat |
127 |
Q |
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| T |
32505756 |
caacaacaacaataattcagacgattcaacatccgaaagcaccaccaacaacaacaataactcagatgaatcaacgtccgaaagcacaaccaacaacaat |
32505855 |
T |
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| Q |
128 |
aataataactcagatgaatcaacgtctgaaac |
159 |
Q |
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| T |
32505856 |
aataataactcagatgaatcaacgtctgaaac |
32505887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 263 - 359
Target Start/End: Original strand, 32505991 - 32506087
Alignment:
| Q |
263 |
tcggatgaatcaacatctgaaaccaacacaaagagcaaagatcaaaaggatactactactgtgtatggagacaatcctggtaatctaccggatgatg |
359 |
Q |
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| T |
32505991 |
tcggatggatcaacatctgaaaccaacacaaagagcaaagatcaaaaggatactgctactgtgtacggagacaatcctggtaatctaccggatgatg |
32506087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 28 - 124
Target Start/End: Original strand, 32505801 - 32505900
Alignment:
| Q |
28 |
caacaacaacaataattcagacgattcaacatccgaaagcaccgccaacaacaacaata---actcagatgaatcaacgtccgaaagcacaaccaacaac |
124 |
Q |
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| T |
32505801 |
caacaacaacaataactcagatgaatcaacgtccgaaagcacaaccaacaacaataataataactcagatgaatcaacgtctgaaaccacgaacaacaac |
32505900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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