View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0718_low_28 (Length: 360)
Name: NF0718_low_28
Description: NF0718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0718_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 9581062 - 9580728
Alignment:
| Q |
1 |
tatgttgtccaaacaccaggatacgtaaaccattctgtgttcctgttcagatccgcaggtggcacagctttgacatagagatttgccatcaaattttgca |
100 |
Q |
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| T |
9581062 |
tatgttgtccaaacaccaggatacgtaaaccattctgtgttcctgttcagatccgcaggtggcacagctttgacatagagatttgccatcaaattttgca |
9580963 |
T |
|
| Q |
101 |
aaatttggaaaatctaaatatacccttttgattgaaacgttgaatagaataaatctagatagaaaagattgaaacttgatgaatttgattttgatgggtt |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9580962 |
aaatttggaaaatctaaatacacccttttgattgaaacgttgaatagaataaatctagatagaaaagattgaaacttgatgaatttgattttgatgggtt |
9580863 |
T |
|
| Q |
201 |
tgatttagggttgtttgtgaatgaaaattccaaaacccaaaaacgtaacccttattttgatttt-gattcaatgatattagcgtgcgtgtgtgtctgtgt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
9580862 |
tgatttagggttgtttgtgaatgaaaattccaaaacccaaaaacgtaacccttattttgattttggattcaatgatattagcgtgcgtgtgtgtctgtgt |
9580763 |
T |
|
| Q |
300 |
gaaaatgtgaatgaaattgggaaattgaaaattga |
334 |
Q |
| |
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||||||||||| ||||||||||||||||||||||| |
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| T |
9580762 |
gaaaatgtgaaggaaattgggaaattgaaaattga |
9580728 |
T |
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