View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0718_low_29 (Length: 333)

Name: NF0718_low_29
Description: NF0718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0718_low_29
NF0718_low_29
[»] chr7 (10 HSPs)
chr7 (90-333)||(9948963-9949212)
chr7 (265-333)||(28782014-28782082)
chr7 (266-329)||(9942602-9942665)
chr7 (265-333)||(11621397-11621465)
chr7 (266-314)||(1032272-1032320)
chr7 (265-333)||(40871301-40871369)
chr7 (197-225)||(9482965-9482993)
chr7 (268-312)||(12622906-12622950)
chr7 (197-225)||(20549822-20549850)
chr7 (197-225)||(22602710-22602738)
[»] chr2 (13 HSPs)
chr2 (266-333)||(2702258-2702325)
chr2 (265-333)||(12410820-12410888)
chr2 (265-333)||(12422880-12422948)
chr2 (265-333)||(6764453-6764521)
chr2 (266-333)||(27271673-27271740)
chr2 (266-329)||(37648002-37648065)
chr2 (273-333)||(34394492-34394552)
chr2 (197-225)||(5367223-5367251)
chr2 (197-225)||(20242727-20242755)
chr2 (197-225)||(34691805-34691833)
chr2 (197-225)||(34714217-34714245)
chr2 (197-225)||(35056899-35056927)
chr2 (197-225)||(44860351-44860379)
[»] chr1 (15 HSPs)
chr1 (265-333)||(4532086-4532154)
chr1 (266-333)||(33766389-33766456)
chr1 (266-331)||(51534478-51534543)
chr1 (265-333)||(19227886-19227954)
chr1 (265-333)||(34549396-34549464)
chr1 (265-333)||(45432373-45432441)
chr1 (265-332)||(13182678-13182745)
chr1 (266-320)||(28756478-28756532)
chr1 (288-333)||(31911571-31911616)
chr1 (197-225)||(30749871-30749899)
chr1 (197-225)||(30771322-30771350)
chr1 (273-333)||(33936466-33936526)
chr1 (197-225)||(34371744-34371772)
chr1 (197-225)||(44482261-44482289)
chr1 (197-225)||(52903280-52903308)
[»] chr8 (11 HSPs)
chr8 (266-333)||(45547933-45548000)
chr8 (265-318)||(24504102-24504155)
chr8 (266-332)||(45540350-45540413)
chr8 (265-316)||(25582580-25582631)
chr8 (265-333)||(8444262-8444327)
chr8 (265-330)||(4034300-4034365)
chr8 (197-226)||(8847287-8847316)
chr8 (265-318)||(13089765-13089818)
chr8 (197-225)||(4786338-4786366)
chr8 (197-225)||(11927086-11927114)
chr8 (197-225)||(26902175-26902203)
[»] chr4 (8 HSPs)
chr4 (266-333)||(43499330-43499397)
chr4 (266-330)||(39059723-39059787)
chr4 (269-320)||(7743618-7743669)
chr4 (265-320)||(48640782-48640837)
chr4 (267-333)||(36651742-36651808)
chr4 (269-333)||(37870649-37870713)
chr4 (269-313)||(42718625-42718669)
chr4 (265-333)||(9896507-9896575)
[»] scaffold0300 (1 HSPs)
scaffold0300 (265-333)||(9610-9678)
[»] chr5 (8 HSPs)
chr5 (265-333)||(22639592-22639660)
chr5 (266-320)||(39143220-39143274)
chr5 (266-333)||(19021422-19021489)
chr5 (266-320)||(6537122-6537176)
chr5 (197-230)||(3966534-3966567)
chr5 (273-333)||(22580397-22580457)
chr5 (197-225)||(30502388-30502416)
chr5 (197-225)||(30542731-30542759)
[»] chr6 (6 HSPs)
chr6 (265-333)||(12912247-12912315)
chr6 (265-333)||(6029362-6029430)
chr6 (197-225)||(7027273-7027301)
chr6 (197-225)||(7265593-7265621)
chr6 (197-225)||(9025494-9025522)
chr6 (197-225)||(21924935-21924963)
[»] scaffold0041 (1 HSPs)
scaffold0041 (265-333)||(94913-94981)
[»] scaffold0037 (1 HSPs)
scaffold0037 (266-333)||(1010-1077)
[»] chr3 (6 HSPs)
chr3 (266-320)||(15030113-15030167)
chr3 (197-225)||(7928481-7928509)
chr3 (197-225)||(8039835-8039863)
chr3 (288-320)||(20406426-20406458)
chr3 (197-225)||(25093533-25093561)
chr3 (197-225)||(40993335-40993363)
[»] scaffold0116 (1 HSPs)
scaffold0116 (200-229)||(9932-9961)
[»] scaffold0036 (1 HSPs)
scaffold0036 (197-225)||(9747-9775)


Alignment Details
Target: chr7 (Bit Score: 141; Significance: 7e-74; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 90 - 333
Target Start/End: Complemental strand, 9949212 - 9948963
Alignment:
Q  90 catcatcaactagactgctatgaagcaaaaatattgacacaaagataggatatgatatagacaccaacacgccgacaccaataataatatat------nn 183  Q
    |||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||            
T  9949212 catcattaactagactgctatgaagcaaaaatattgacacaaacatcggatatgatatagacaccaacacgccgacaccaataataatatataaaaaaaa 9949113  T
Q  184 nnnnnnnnnnnntattcagtgtaattatatgtgtcggtgtcgcgtcaatatccacaccgatacgtgtccgacannnnnnnngaagaaactaaaatggatt 283  Q
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||    
T  9949112 taaaaaataaaaaattcagtgtaattatatgtgtcggtgtcgcgtcaatatccacaccgatacgtgtccgacattttttttgaagaaactaaaatggatt 9949013  T
Q  284 aaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccag 333  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  9949012 aaaatactgaaagcctgaagatttcagcacaaggagtaccaaaaccccag 9948963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 265 - 333
Target Start/End: Original strand, 28782014 - 28782082
Alignment:
Q  265 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccag 333  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||    
T  28782014 gaagaaactaaaatggattaaaatactgaaagcctggagatttcagcacaaggagtgccaaaaccccag 28782082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 266 - 329
Target Start/End: Original strand, 9942602 - 9942665
Alignment:
Q  266 aagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaacc 329  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||  |||||||    
T  9942602 aagaaactaaaatggattaaaatactgaaagtctggagatttcagcacaaggagtgtcaaaacc 9942665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 265 - 333
Target Start/End: Complemental strand, 11621465 - 11621397
Alignment:
Q  265 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccag 333  Q
    |||||| ||||||||||||| | ||||||||||||| |||||||||||||||||||  |||||||||||    
T  11621465 gaagaagctaaaatggattatattactgaaagcctggagatttcagcacaaggagtgccaaaaccccag 11621397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 314
Target Start/End: Complemental strand, 1032320 - 1032272
Alignment:
Q  266 aagaaactaaaatggattaaaatactgaaagcctgaagatttcagcaca 314  Q
    ||||||||||| |||| |||| ||||||||||||| |||||||||||||    
T  1032320 aagaaactaaattggactaaattactgaaagcctggagatttcagcaca 1032272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 333
Target Start/End: Original strand, 40871301 - 40871369
Alignment:
Q  265 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccag 333  Q
    |||||| ||||||||||||| | || | |||||||| |||||||||||||||||||  ||||| |||||    
T  40871301 gaagaagctaaaatggattatattattaaaagcctggagatttcagcacaaggagtgccaaaatcccag 40871369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 225
Target Start/End: Original strand, 9482965 - 9482993
Alignment:
Q  197 attcagtgtaattatatgtgtcggtgtcg 225  Q
    |||||||||||||||||||||||||||||    
T  9482965 attcagtgtaattatatgtgtcggtgtcg 9482993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 312
Target Start/End: Original strand, 12622906 - 12622950
Alignment:
Q  268 gaaactaaaatggattaaaatactgaaagcctgaagatttcagca 312  Q
    ||||||||||||||||| | ||||||||||||| |||||| ||||    
T  12622906 gaaactaaaatggattatattactgaaagcctggagattttagca 12622950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 225
Target Start/End: Original strand, 20549822 - 20549850
Alignment:
Q  197 attcagtgtaattatatgtgtcggtgtcg 225  Q
    |||||||||||||||||||||||||||||    
T  20549822 attcagtgtaattatatgtgtcggtgtcg 20549850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 225
Target Start/End: Complemental strand, 22602738 - 22602710
Alignment:
Q  197 attcagtgtaattatatgtgtcggtgtcg 225  Q
    |||||||||||||||||||||||||||||    
T  22602738 attcagtgtaattatatgtgtcggtgtcg 22602710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 266 - 333
Target Start/End: Original strand, 2702258 - 2702325
Alignment:
Q  266 aagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccag 333  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||    
T  2702258 aagaaactaaaatggattaaaatactgaaagcctcaagatttcagcacaaggagtgccaaaaccccag 2702325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 265 - 333
Target Start/End: Complemental strand, 12410888 - 12410820
Alignment:
Q  265 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccag 333  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||| |||| ||||||||||||    
T  12410888 gaagaaactaaaatggattaaaatactgaaagcctggagatttcatcacaaagagtgacaaaaccccag 12410820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 265 - 333
Target Start/End: Complemental strand, 12422948 - 12422880
Alignment:
Q  265 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccag 333  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||| |||| ||||||||||||    
T  12422948 gaagaaactaaaatggattaaaatactgaaagcctggagatttcatcacaaagagtgacaaaaccccag 12422880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 265 - 333
Target Start/End: Complemental strand, 6764521 - 6764453
Alignment:
Q  265 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccag 333  Q
    |||||||||||||||||||||||||||||||||  | ||||||||||| |||||||  |||||||||||    
T  6764521 gaagaaactaaaatggattaaaatactgaaagctcggagatttcagcataaggagtgtcaaaaccccag 6764453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 266 - 333
Target Start/End: Complemental strand, 27271740 - 27271673
Alignment:
Q  266 aagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccag 333  Q
    ||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||  |||||| ||||    
T  27271740 aagaaactaaaatagattaaattactgaaagcctggagatttcagcacaaggagtgtcaaaactccag 27271673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 266 - 329
Target Start/End: Complemental strand, 37648065 - 37648002
Alignment:
Q  266 aagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaacc 329  Q
    |||||| ||||||||||||||||||||||||  || |||||||||||||||||||  |||||||    
T  37648065 aagaaattaaaatggattaaaatactgaaagtttggagatttcagcacaaggagtgccaaaacc 37648002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 333
Target Start/End: Original strand, 34394492 - 34394552
Alignment:
Q  273 taaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccag 333  Q
    ||||||| |||| | |||||||||||| ||||||||| ||||||||||  |||||||||||    
T  34394492 taaaatgaattatattactgaaagcctaaagatttcaacacaaggagtgccaaaaccccag 34394552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 225
Target Start/End: Original strand, 5367223 - 5367251
Alignment:
Q  197 attcagtgtaattatatgtgtcggtgtcg 225  Q
    |||||||||||||||||||||||||||||    
T  5367223 attcagtgtaattatatgtgtcggtgtcg 5367251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 225
Target Start/End: Complemental strand, 20242755 - 20242727
Alignment:
Q  197 attcagtgtaattatatgtgtcggtgtcg 225  Q
    |||||||||||||||||||||||||||||    
T  20242755 attcagtgtaattatatgtgtcggtgtcg 20242727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 225
Target Start/End: Complemental strand, 34691833 - 34691805
Alignment:
Q  197 attcagtgtaattatatgtgtcggtgtcg 225  Q
    |||||||||||||||||||||||||||||    
T  34691833 attcagtgtaattatatgtgtcggtgtcg 34691805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 225
Target Start/End: Complemental strand, 34714245 - 34714217
Alignment:
Q  197 attcagtgtaattatatgtgtcggtgtcg 225  Q
    |||||||||||||||||||||||||||||    
T  34714245 attcagtgtaattatatgtgtcggtgtcg 34714217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 225
Target Start/End: Original strand, 35056899 - 35056927
Alignment:
Q  197 attcagtgtaattatatgtgtcggtgtcg 225  Q
    |||||||||||||||||||||||||||||    
T  35056899 attcagtgtaattatatgtgtcggtgtcg 35056927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 225
Target Start/End: Original strand, 44860351 - 44860379
Alignment:
Q  197 attcagtgtaattatatgtgtcggtgtcg 225  Q
    |||||||||||||||||||||||||||||    
T  44860351 attcagtgtaattatatgtgtcggtgtcg 44860379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 265 - 333
Target Start/End: Original strand, 4532086 - 4532154
Alignment:
Q  265 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccag 333  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||  |||||||||||    
T  4532086 gaagaaactaaaatggattaaaatactgaaagtctggagatttcagcacaaggagtgccaaaaccccag 4532154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 266 - 333
Target Start/End: Complemental strand, 33766456 - 33766389
Alignment:
Q  266 aagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccag 333  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||  |||||||||||    
T  33766456 aagaaactaaaatggattaaaatactgaaagtctggagatttcagcacaaggagtgccaaaaccccag 33766389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 266 - 331
Target Start/End: Original strand, 51534478 - 51534543
Alignment:
Q  266 aagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaacccc 331  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||  |||||||||    
T  51534478 aagaaactaaaatggattaaaataccgaaagcctggagatttcagcacaaggagtgccaaaacccc 51534543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 265 - 333
Target Start/End: Original strand, 19227886 - 19227954
Alignment:
Q  265 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccag 333  Q
    |||||| ||||||||||||| | ||||||||||||| |||||||||||||||||||  |||||||||||    
T  19227886 gaagaagctaaaatggattatattactgaaagcctggagatttcagcacaaggagtgccaaaaccccag 19227954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 265 - 333
Target Start/End: Complemental strand, 34549464 - 34549396
Alignment:
Q  265 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccag 333  Q
    |||||| ||||||||||||| | |||| |||| ||| |||||||||||||||||||  |||||||||||    
T  34549464 gaagaagctaaaatggattatattactaaaagtctggagatttcagcacaaggagtgccaaaaccccag 34549396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 265 - 333
Target Start/End: Original strand, 45432373 - 45432441
Alignment:
Q  265 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccag 333  Q
    |||||| ||||||||||||| | |||| |||| ||| |||||||||||||||||||  |||||||||||    
T  45432373 gaagaagctaaaatggattatattactaaaagtctggagatttcagcacaaggagtgccaaaaccccag 45432441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 265 - 332
Target Start/End: Complemental strand, 13182745 - 13182678
Alignment:
Q  265 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaacccca 332  Q
    ||||||| |||||| ||||||||||||||||||||| | ||||||| | |||||||  ||||||||||    
T  13182745 gaagaaattaaaatagattaaaatactgaaagcctggaaatttcagtataaggagtgccaaaacccca 13182678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 320
Target Start/End: Original strand, 28756478 - 28756532
Alignment:
Q  266 aagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagt 320  Q
    ||||| |||||||| | || | ||||||| |||||||||||||||||||||||||    
T  28756478 aagaagctaaaatgaaatatattactgaatgcctgaagatttcagcacaaggagt 28756532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 333
Target Start/End: Original strand, 31911571 - 31911616
Alignment:
Q  288 tactgaaagcctgaagatttcagcacaaggagtaacaaaaccccag 333  Q
    ||||||||||||||||||||||| |||||||||  |||||| ||||    
T  31911571 tactgaaagcctgaagatttcagtacaaggagtgtcaaaacgccag 31911616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 225
Target Start/End: Original strand, 30749871 - 30749899
Alignment:
Q  197 attcagtgtaattatatgtgtcggtgtcg 225  Q
    |||||||||||||||||||||||||||||    
T  30749871 attcagtgtaattatatgtgtcggtgtcg 30749899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 225
Target Start/End: Original strand, 30771322 - 30771350
Alignment:
Q  197 attcagtgtaattatatgtgtcggtgtcg 225  Q
    |||||||||||||||||||||||||||||    
T  30771322 attcagtgtaattatatgtgtcggtgtcg 30771350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 333
Target Start/End: Complemental strand, 33936526 - 33936466
Alignment:
Q  273 taaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccag 333  Q
    |||||||||||| | ||||||||| ||| ||||||||| |||||||||  ||||| |||||    
T  33936526 taaaatggattatattactgaaagtctggagatttcaggacaaggagtgccaaaatcccag 33936466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 225
Target Start/End: Original strand, 34371744 - 34371772
Alignment:
Q  197 attcagtgtaattatatgtgtcggtgtcg 225  Q
    |||||||||||||||||||||||||||||    
T  34371744 attcagtgtaattatatgtgtcggtgtcg 34371772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 225
Target Start/End: Original strand, 44482261 - 44482289
Alignment:
Q  197 attcagtgtaattatatgtgtcggtgtcg 225  Q
    |||||||||||||||||||||||||||||    
T  44482261 attcagtgtaattatatgtgtcggtgtcg 44482289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 225
Target Start/End: Original strand, 52903280 - 52903308
Alignment:
Q  197 attcagtgtaattatatgtgtcggtgtcg 225  Q
    |||||||||||||||||||||||||||||    
T  52903280 attcagtgtaattatatgtgtcggtgtcg 52903308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 9e-21; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 266 - 333
Target Start/End: Complemental strand, 45548000 - 45547933
Alignment:
Q  266 aagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccag 333  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||  |||||||||||    
T  45548000 aagaaactaaaatggattaaattactgaaagcctggagatttcagcacaaggagtgccaaaaccccag 45547933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 265 - 318
Target Start/End: Complemental strand, 24504155 - 24504102
Alignment:
Q  265 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaagga 318  Q
    ||||||||||||||||||||||| ||||||||| |  |||||||||||||||||    
T  24504155 gaagaaactaaaatggattaaaaaactgaaagcatagagatttcagcacaagga 24504102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 332
Target Start/End: Complemental strand, 45540413 - 45540350
Alignment:
Q  266 aagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaacccca 332  Q
    |||||||||||| |||||||| |||||||||||   ||||||||||||||||| |  ||||||||||    
T  45540413 aagaaactaaaacggattaaattactgaaagcc---agatttcagcacaaggaatgccaaaacccca 45540350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 265 - 316
Target Start/End: Original strand, 25582580 - 25582631
Alignment:
Q  265 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaag 316  Q
    ||||||||||||||||| || | ||||||| ||||||| |||||||||||||    
T  25582580 gaagaaactaaaatggaatatattactgaacgcctgaatatttcagcacaag 25582631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 333
Target Start/End: Original strand, 8444262 - 8444327
Alignment:
Q  265 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccag 333  Q
    |||||||||||||||||||||||||   | |||||  |||||||||||||| ||||  |||||||||||    
T  8444262 gaagaaactaaaatggattaaaata---atagcctagagatttcagcacaaagagtgccaaaaccccag 8444327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 330
Target Start/End: Original strand, 4034300 - 4034365
Alignment:
Q  265 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccc 330  Q
    |||||| |||||||| |||| | |||| |||| |||||||||| ||||||||||||  ||||||||    
T  4034300 gaagaagctaaaatgaattatattactaaaagtctgaagattttagcacaaggagtgccaaaaccc 4034365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 226
Target Start/End: Original strand, 8847287 - 8847316
Alignment:
Q  197 attcagtgtaattatatgtgtcggtgtcgc 226  Q
    ||||||||||||||||||||||||||||||    
T  8847287 attcagtgtaattatatgtgtcggtgtcgc 8847316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 318
Target Start/End: Original strand, 13089765 - 13089818
Alignment:
Q  265 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaagga 318  Q
    |||||| ||||||||||||| | |||| |||| ||| |||||||||||||||||    
T  13089765 gaagaagctaaaatggattatattactaaaagtctggagatttcagcacaagga 13089818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 225
Target Start/End: Complemental strand, 4786366 - 4786338
Alignment:
Q  197 attcagtgtaattatatgtgtcggtgtcg 225  Q
    |||||||||||||||||||||||||||||    
T  4786366 attcagtgtaattatatgtgtcggtgtcg 4786338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 225
Target Start/End: Complemental strand, 11927114 - 11927086
Alignment:
Q  197 attcagtgtaattatatgtgtcggtgtcg 225  Q
    |||||||||||||||||||||||||||||    
T  11927114 attcagtgtaattatatgtgtcggtgtcg 11927086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 225
Target Start/End: Complemental strand, 26902203 - 26902175
Alignment:
Q  197 attcagtgtaattatatgtgtcggtgtcg 225  Q
    |||||||||||||||||||||||||||||    
T  26902203 attcagtgtaattatatgtgtcggtgtcg 26902175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 9e-21; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 266 - 333
Target Start/End: Complemental strand, 43499397 - 43499330
Alignment:
Q  266 aagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccag 333  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||||||||  |||||||||||    
T  43499397 aagaaactaaaatggattaaaatactgaaagcttggagatttcagcacaaggagtgccaaaaccccag 43499330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 266 - 330
Target Start/End: Original strand, 39059723 - 39059787
Alignment:
Q  266 aagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccc 330  Q
    ||||||||||||||||||||| ||||||||| ||||||| ||||||||||| |||  ||||||||    
T  39059723 aagaaactaaaatggattaaattactgaaagtctgaagaattcagcacaagcagtgccaaaaccc 39059787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 269 - 320
Target Start/End: Complemental strand, 7743669 - 7743618
Alignment:
Q  269 aaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagt 320  Q
    ||||||||||||||||||| ||||||||| || |||||||||||||||||||    
T  7743669 aaactaaaatggattaaaaaactgaaagcatggagatttcagcacaaggagt 7743618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 265 - 320
Target Start/End: Complemental strand, 48640837 - 48640782
Alignment:
Q  265 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagt 320  Q
    ||||||||||||||||| || | ||||||| |||||||||||||||||||||||||    
T  48640837 gaagaaactaaaatggaatatattactgaacgcctgaagatttcagcacaaggagt 48640782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 267 - 333
Target Start/End: Original strand, 36651742 - 36651808
Alignment:
Q  267 agaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccag 333  Q
    |||||||||||||||||||||||  |||||  || |||||||||||||||||||  |||||||||||    
T  36651742 agaaactaaaatggattaaaatatcgaaagtttggagatttcagcacaaggagtgccaaaaccccag 36651808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 269 - 333
Target Start/End: Original strand, 37870649 - 37870713
Alignment:
Q  269 aaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccag 333  Q
    |||||||||||||||| | |||| |||| ||| |||||||||||||||||||  |||||||||||    
T  37870649 aaactaaaatggattatattactcaaagtctggagatttcagcacaaggagtgccaaaaccccag 37870713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 269 - 313
Target Start/End: Complemental strand, 42718669 - 42718625
Alignment:
Q  269 aaactaaaatggattaaaatactgaaagcctgaagatttcagcac 313  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||    
T  42718669 aaactaaaatggattaaaaaactgaaagcctggagatttcagcac 42718625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 333
Target Start/End: Original strand, 9896507 - 9896575
Alignment:
Q  265 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccag 333  Q
    |||||||||||||||||| ||| || ||||||| || | |||| ||||||||||||  |||||||||||    
T  9896507 gaagaaactaaaatggataaaattagtgaaagcttggaaatttaagcacaaggagtgccaaaaccccag 9896575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 265 - 333
Target Start/End: Complemental strand, 9678 - 9610
Alignment:
Q  265 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccag 333  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||  ||||| |||||    
T  9678 gaagaaactaaaatggattaaaatactaaaagcctgaagatttcagcacaagaagtgtcaaaatcccag 9610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 265 - 333
Target Start/End: Complemental strand, 22639660 - 22639592
Alignment:
Q  265 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccag 333  Q
    ||||||||||||||||||||||||||||||||  || |||||||| ||||||||||  |||||||||||    
T  22639660 gaagaaactaaaatggattaaaatactgaaagtttggagatttcatcacaaggagtgccaaaaccccag 22639592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 266 - 320
Target Start/End: Original strand, 39143220 - 39143274
Alignment:
Q  266 aagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagt 320  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||    
T  39143220 aagaaactaaaatggattaaaataccgaaagcctggagatttcagcataaggagt 39143274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 266 - 333
Target Start/End: Complemental strand, 19021489 - 19021422
Alignment:
Q  266 aagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccag 333  Q
    ||||||||||||||||||||| || ||||||| || ||||||||| | |||||||  |||||||||||    
T  19021489 aagaaactaaaatggattaaattattgaaagcttggagatttcagtataaggagtgccaaaaccccag 19021422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 320
Target Start/End: Complemental strand, 6537176 - 6537122
Alignment:
Q  266 aagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagt 320  Q
    ||||||||||||||||| ||| ||||||||  ||| ||||||||||| |||||||    
T  6537176 aagaaactaaaatggatgaaattactgaaactctggagatttcagcataaggagt 6537122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 230
Target Start/End: Original strand, 3966534 - 3966567
Alignment:
Q  197 attcagtgtaattatatgtgtcggtgtcgcgtca 230  Q
    ||||||||||||||||||||||||||||| ||||    
T  3966534 attcagtgtaattatatgtgtcggtgtcgtgtca 3966567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 333
Target Start/End: Original strand, 22580397 - 22580457
Alignment:
Q  273 taaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccag 333  Q
    ||||||||| || | |||||||||||| |||||||||| ||||| |||  |||||||||||    
T  22580397 taaaatggaatatattactgaaagcctaaagatttcagtacaagaagtgtcaaaaccccag 22580457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 225
Target Start/End: Complemental strand, 30502416 - 30502388
Alignment:
Q  197 attcagtgtaattatatgtgtcggtgtcg 225  Q
    |||||||||||||||||||||||||||||    
T  30502416 attcagtgtaattatatgtgtcggtgtcg 30502388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 225
Target Start/End: Complemental strand, 30542759 - 30542731
Alignment:
Q  197 attcagtgtaattatatgtgtcggtgtcg 225  Q
    |||||||||||||||||||||||||||||    
T  30542759 attcagtgtaattatatgtgtcggtgtcg 30542731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 265 - 333
Target Start/End: Original strand, 12912247 - 12912315
Alignment:
Q  265 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccag 333  Q
    |||||| ||||||||||||| | |||| |||| ||| |||||||||||||||||||  |||||||||||    
T  12912247 gaagaagctaaaatggattatattactaaaagtctggagatttcagcacaaggagtgtcaaaaccccag 12912315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 333
Target Start/End: Complemental strand, 6029430 - 6029362
Alignment:
Q  265 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccag 333  Q
    |||||| |||||||||| || | ||||||||  |||||||||||||||||||||||  ||||| |||||    
T  6029430 gaagaagctaaaatggaatatattactgaaaatctgaagatttcagcacaaggagtgccaaaatcccag 6029362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 225
Target Start/End: Original strand, 7027273 - 7027301
Alignment:
Q  197 attcagtgtaattatatgtgtcggtgtcg 225  Q
    |||||||||||||||||||||||||||||    
T  7027273 attcagtgtaattatatgtgtcggtgtcg 7027301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 225
Target Start/End: Complemental strand, 7265621 - 7265593
Alignment:
Q  197 attcagtgtaattatatgtgtcggtgtcg 225  Q
    |||||||||||||||||||||||||||||    
T  7265621 attcagtgtaattatatgtgtcggtgtcg 7265593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 225
Target Start/End: Complemental strand, 9025522 - 9025494
Alignment:
Q  197 attcagtgtaattatatgtgtcggtgtcg 225  Q
    |||||||||||||||||||||||||||||    
T  9025522 attcagtgtaattatatgtgtcggtgtcg 9025494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 225
Target Start/End: Complemental strand, 21924963 - 21924935
Alignment:
Q  197 attcagtgtaattatatgtgtcggtgtcg 225  Q
    |||||||||||||||||||||||||||||    
T  21924963 attcagtgtaattatatgtgtcggtgtcg 21924935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 333
Target Start/End: Complemental strand, 94981 - 94913
Alignment:
Q  265 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccag 333  Q
    |||||| ||||||||||||| | || | |||||||| |||||||||||||||||||  ||||| |||||    
T  94981 gaagaagctaaaatggattatattattaaaagcctggagatttcagcacaaggagtgccaaaatcccag 94913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 266 - 333
Target Start/End: Complemental strand, 1077 - 1010
Alignment:
Q  266 aagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccag 333  Q
    ||||| ||||||||||||| | |||  |||| ||| ||||||||||| ||||||| ||||||||||||    
T  1077 aagaagctaaaatggattatattacaaaaagtctggagatttcagcataaggagtgacaaaaccccag 1010  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 320
Target Start/End: Complemental strand, 15030167 - 15030113
Alignment:
Q  266 aagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagt 320  Q
    |||| |||||||| || || | |||||||||||||||||||||||||||| ||||    
T  15030167 aagagactaaaatagaatatattactgaaagcctgaagatttcagcacaaagagt 15030113  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 225
Target Start/End: Original strand, 7928481 - 7928509
Alignment:
Q  197 attcagtgtaattatatgtgtcggtgtcg 225  Q
    |||||||||||||||||||||||||||||    
T  7928481 attcagtgtaattatatgtgtcggtgtcg 7928509  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 225
Target Start/End: Complemental strand, 8039863 - 8039835
Alignment:
Q  197 attcagtgtaattatatgtgtcggtgtcg 225  Q
    |||||||||||||||||||||||||||||    
T  8039863 attcagtgtaattatatgtgtcggtgtcg 8039835  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 320
Target Start/End: Complemental strand, 20406458 - 20406426
Alignment:
Q  288 tactgaaagcctgaagatttcagcacaaggagt 320  Q
    ||||||| |||||||||||||||||||||||||    
T  20406458 tactgaacgcctgaagatttcagcacaaggagt 20406426  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 225
Target Start/End: Original strand, 25093533 - 25093561
Alignment:
Q  197 attcagtgtaattatatgtgtcggtgtcg 225  Q
    |||||||||||||||||||||||||||||    
T  25093533 attcagtgtaattatatgtgtcggtgtcg 25093561  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 225
Target Start/End: Complemental strand, 40993363 - 40993335
Alignment:
Q  197 attcagtgtaattatatgtgtcggtgtcg 225  Q
    |||||||||||||||||||||||||||||    
T  40993363 attcagtgtaattatatgtgtcggtgtcg 40993335  T

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Target: scaffold0116 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 229
Target Start/End: Original strand, 9932 - 9961
Alignment:
Q  200 cagtgtaattatatgtgtcggtgtcgcgtc 229  Q
    ||||||||||||||||||||||||||||||    
T  9932 cagtgtaattatatgtgtcggtgtcgcgtc 9961  T

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Target: scaffold0036 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 225
Target Start/End: Complemental strand, 9775 - 9747
Alignment:
Q  197 attcagtgtaattatatgtgtcggtgtcg 225  Q
    |||||||||||||||||||||||||||||    
T  9775 attcagtgtaattatatgtgtcggtgtcg 9747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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