View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0718_low_3 (Length: 623)
Name: NF0718_low_3
Description: NF0718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0718_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 42 - 430
Target Start/End: Complemental strand, 30666027 - 30665639
Alignment:
| Q |
42 |
gacatcatcaggaagggaaagatgtgttgtctgttcatcaacgatctcgatgcaggagcaggtcgtatgggtggaaccacacaatacactgtcaacaacc |
141 |
Q |
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| T |
30666027 |
gacattatcaggaagggaaagatgtgttgtctgttcatcaacgatctcgatgcaggagcaggtcgtatgggtggaaccacacaatacactgtcaacaacc |
30665928 |
T |
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| Q |
142 |
agatggtgaatgccacactcatgaacattgctgataaccccaccaatgtccaactccctggtatgtacaacaaggaagataacgctcgtgtgcccatcat |
241 |
Q |
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| T |
30665927 |
agatggtgaatgccacactcatgaacattgctgataaccccaccaatgtccaactccctggtatgtacaacaaggaagataacgctcgtgtgcccatcat |
30665828 |
T |
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| Q |
242 |
tgtcaccggtaatgatttctcaacactttatgctcctctcatccgtgatggtcgtatggagaaattctactgggctcctacaagagaagaccgtattggt |
341 |
Q |
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| T |
30665827 |
tgtcaccggtaacgatttctcaacactttatgctcctctcatccgtgatggtcgtatggagaaattctactgggctcctacaagagaagaccgtattggt |
30665728 |
T |
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| Q |
342 |
gtctgcattggaattttccgccatgacaatatcgcaaaagatgacattgtcaagattgttgacaccttccccggccaatccatcggtac |
430 |
Q |
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| T |
30665727 |
gtctgcattggaattttccgccatgacaatatcgcaaaagatgacattgtcaagattgttgacaccttccccggccaatccatcggtac |
30665639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 485 - 594
Target Start/End: Complemental strand, 30665596 - 30665487
Alignment:
| Q |
485 |
tatttacgagctattattgttgcagatttcttcggtgcattgagggctagagtgtacgatgatgaagtgaggaagtgggtttctggagttggtattgaaa |
584 |
Q |
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| T |
30665596 |
tatttacgagctattattgttgcagatttcttcggtgcattgagggctagagtgtacgatgatgaagtgaggaagtgggtttctggagttggtattgaaa |
30665497 |
T |
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| Q |
585 |
caattggaaa |
594 |
Q |
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|||||||||| |
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| T |
30665496 |
caattggaaa |
30665487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 146; Significance: 1e-76; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 54 - 343
Target Start/End: Complemental strand, 34435376 - 34435088
Alignment:
| Q |
54 |
aagggaaagatgtgttgtctgttcatcaacgatctcgatgcaggagcaggtcgtatgggtggaaccacacaatacactgtcaacaaccagatggtgaatg |
153 |
Q |
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| T |
34435376 |
aagggaaa-atgtgttgtctcttcataaacgatcttgatgcaggagccggtcgtatgggtggaacaacacagtacacagtgaacaatcaaatggtaaatg |
34435278 |
T |
|
| Q |
154 |
ccacactcatgaacattgctgataaccccaccaatgtccaactccctggtatgtacaacaaggaagataacgctcgtgtgcccatcattgtcaccggtaa |
253 |
Q |
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| T |
34435277 |
caacacttatgaacattgctgataacccaacaaatgttcaacttcctggtatgtataacaaagaagagaatgcacgtgtgcctatcattgttactggtaa |
34435178 |
T |
|
| Q |
254 |
tgatttctcaacactttatgctcctctcatccgtgatggtcgtatggagaaattctactgggctcctacaagagaagaccgtattggtgt |
343 |
Q |
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| T |
34435177 |
tgatttttcaacattgtatgctcctcttattcgtgacggtcgtatggagaaattctattgggcacctacaagagaagatcgtattggtgt |
34435088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 507 - 591
Target Start/End: Complemental strand, 34434857 - 34434773
Alignment:
| Q |
507 |
cagatttcttcggtgcattgagggctagagtgtacgatgatgaagtgaggaagtgggtttctggagttggtattgaaacaattgg |
591 |
Q |
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| T |
34434857 |
cagatttctttggtgcacttagggcaagagtatatgatgatgaagtgagaaagtggattgctggtgttggcattgaaaccattgg |
34434773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 109; Significance: 2e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 42 - 322
Target Start/End: Complemental strand, 6853760 - 6853480
Alignment:
| Q |
42 |
gacatcatcaggaagggaaagatgtgttgtctgttcatcaacgatctcgatgcaggagcaggtcgtatgggtggaaccacacaatacactgtcaacaacc |
141 |
Q |
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| T |
6853760 |
gacattatcagaaaaggaaagatgtgctgtctcttcatcaatgatcttgatgcaggagctggtagaatgggtggcactactcaatacacagtcaacaacc |
6853661 |
T |
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| Q |
142 |
agatggtgaatgccacactcatgaacattgctgataaccccaccaatgtccaactccctggtatgtacaacaaggaagataacgctcgtgtgcccatcat |
241 |
Q |
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| T |
6853660 |
agatggtaaatgcaaccctcatgaacattgctgacaaccctaccaatgttcaacttcccggtatgtacaacaaagaagagaatgcccgcgtccctatcat |
6853561 |
T |
|
| Q |
242 |
tgtcaccggtaatgatttctcaacactttatgctcctctcatccgtgatggtcgtatggagaaattctactgggctcctac |
322 |
Q |
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| T |
6853560 |
cgtcactggcaatgacttctctacgttgtatgctcctttaattcgtgatggacgtatggaaaaattctactgggcacctac |
6853480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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