View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0718_low_30 (Length: 331)

Name: NF0718_low_30
Description: NF0718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0718_low_30
NF0718_low_30
[»] chr3 (2 HSPs)
chr3 (75-266)||(19200418-19200609)
chr3 (78-258)||(21254826-21255005)
[»] chr6 (3 HSPs)
chr6 (76-169)||(17820810-17820903)
chr6 (93-151)||(20114032-20114090)
chr6 (114-167)||(23089037-23089090)
[»] chr5 (4 HSPs)
chr5 (108-258)||(10176709-10176855)
chr5 (102-167)||(26645658-26645723)
chr5 (93-167)||(36734399-36734470)
chr5 (108-172)||(18224106-18224170)
[»] chr4 (2 HSPs)
chr4 (75-234)||(11092863-11093019)
chr4 (201-258)||(11922980-11923037)
[»] chr7 (2 HSPs)
chr7 (93-156)||(15566446-15566509)
chr7 (108-156)||(14246554-14246602)


Alignment Details
Target: chr3 (Bit Score: 168; Significance: 5e-90; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 75 - 266
Target Start/End: Complemental strand, 19200609 - 19200418
Alignment:
Q  75 atcatcaacaacatcattcaacaataatcatagcatataatcatgatttcactaacaattcacaacaacaacatcatttttcctcaacttaagcaaaatt 174  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  19200609 atcatcaacaacatcattcaacaacaatcataacatataatcatgatttcactaacaattcacaacaacaatatcatttttcatcaacttaagcaaaatt 19200510  T
Q  175 cacaaagtgttaatatcttcatacttcaacaatgaaaatcaaacatcaacaacaagtttatcatcaattcaacatacccaaattcttcatct 266  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  19200509 cacaaagtgttaatattttcatacttcaacaatgaaaatcaaacatcaacaacaattttatcatcaattcaacatacccaaattcttcatct 19200418  T

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Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 78 - 258
Target Start/End: Original strand, 21254826 - 21255005
Alignment:
Q  78 atcaacaacatcattcaacaataatcatagcatataatcatgatttcactaacaattcacaacaacaacatcatttttcctcaacttaagcaaaattcac 177  Q
    ||||||||||||||||||||  ||||||| ||||||||||||||||||  || ||||||| |||||| |||||||| || |||| |||||||||| | ||    
T  21254826 atcaacaacatcattcaacac-aatcataacatataatcatgatttcatcaataattcactacaacaccatcatttctcatcaaattaagcaaaaataac 21254924  T
Q  178 aaagtgttaatatcttcatacttcaacaatgaaaatcaaacatcaacaacaagtttatcatcaattcaacatacccaaatt 258  Q
    |||| ||| ||||| |||||| ||||||||||||| ||| || |||||||||| ||| |||||||| ||||||||||||||    
T  21254925 aaagggttcatatcatcatacatcaacaatgaaaaacaaccaacaacaacaagcttaacatcaatttaacatacccaaatt 21255005  T

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Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 76 - 169
Target Start/End: Complemental strand, 17820903 - 17820810
Alignment:
Q  76 tcatcaacaacatcattcaacaataatcatagcatataatcatgatttcactaacaattcacaacaacaacatcatttttcctcaacttaagca 169  Q
    |||||||||||| |||||||||| ||||||| |||||| |||||||||||  ||||||| ||||||| ||||||||||||| |||| |||||||    
T  17820903 tcatcaacaacaacattcaacaacaatcataacatatattcatgatttcatcaacaattaacaacaaaaacatcatttttcatcaaattaagca 17820810  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 151
Target Start/End: Original strand, 20114032 - 20114090
Alignment:
Q  93 caacaataatcatagcatataatcatgatttcactaacaattcacaacaacaacatcat 151  Q
    |||||| | ||||| ||||||||||||||||||| ||||||   |||||||||||||||    
T  20114032 caacaacattcatatcatataatcatgatttcaccaacaatcagcaacaacaacatcat 20114090  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 167
Target Start/End: Complemental strand, 23089090 - 23089037
Alignment:
Q  114 atcatgatttcactaacaattcacaacaacaacatcatttttcctcaacttaag 167  Q
    ||||||||||||| ||||||| |||||||| ||||||||| || |||| |||||    
T  23089090 atcatgatttcaccaacaattaacaacaacgacatcatttctcatcaatttaag 23089037  T

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Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 108 - 258
Target Start/End: Complemental strand, 10176855 - 10176709
Alignment:
Q  108 catataatcatgatttcactaacaattcacaacaacaacatcatttttcctcaacttaagcaaaattcacaaagtgttaatatcttcatacttcaacaat 207  Q
    ||||||| |||||||||| |||||||   ||||||||||||||||||||  ||| |||||||||| |||||||| ||| ||||   ||||||||||| ||    
T  10176855 catataaacatgatttcattaacaat---caacaacaacatcatttttcaccaaattaagcaaaactcacaaag-gttcatattagcatacttcaaccat 10176760  T
Q  208 -gaaaatcaaacatcaacaacaagtttatcatcaattcaacatacccaaatt 258  Q
     ||||||| |||| |||||||||  ||| |||||| | ||||||||||||||    
T  10176759 ggaaaatc-aacaacaacaacaaacttaacatcaaattaacatacccaaatt 10176709  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 167
Target Start/End: Complemental strand, 26645723 - 26645658
Alignment:
Q  102 tcatagcatataatcatgatttcactaacaattcacaacaacaacatcatttttcctcaacttaag 167  Q
    ||||| || |||||||||||||||| ||||||  ||||||||||||||||||||| |||| |||||    
T  26645723 tcatatcacataatcatgatttcaccaacaatcaacaacaacaacatcatttttcatcaatttaag 26645658  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 93 - 167
Target Start/End: Original strand, 36734399 - 36734470
Alignment:
Q  93 caacaataatcatagcatataatcatgatttcactaacaattcacaacaacaacatcatttttcctcaacttaag 167  Q
    |||||| | ||||| ||||||||||||||||||| ||||||   |||||||||||||||||||| |||| |||||    
T  36734399 caacaacattcatatcatataatcatgatttcaccaacaat---caacaacaacatcatttttcatcaatttaag 36734470  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 172
Target Start/End: Complemental strand, 18224170 - 18224106
Alignment:
Q  108 catataatcatgatttcactaacaattcacaacaacaacatcatttttcctcaacttaagcaaaa 172  Q
    |||||||||||||| |||| | || |  ||||||||||||||||||||| |||| ||||||||||    
T  18224170 catataatcatgatctcaccatcattcaacaacaacaacatcatttttcatcaaattaagcaaaa 18224106  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 75 - 234
Target Start/End: Complemental strand, 11093019 - 11092863
Alignment:
Q  75 atcatcaacaacatcattcaacaataatcatagcatataatcatgatttcactaacaattcacaacaacaacatcatttttcctcaacttaagcaaaatt 174  Q
    ||||||| |||||| |  |||||| | ||||| ||||||||||||||||||| |||||||   |||| |||||||||||||| |||| |||||| |||      
T  11093019 atcatcatcaacataacccaacaacattcataacatataatcatgatttcaccaacaatt---aacagcaacatcatttttcatcaatttaagctaaaac 11092923  T
Q  175 cacaaagtgttaatatcttcatacttcaacaatgaaaatcaaacatcaacaacaagttta 234  Q
      ||||||  |||| ||  | ||   ||||||||||||| ||||||||||||||||||||    
T  11092922 ttcaaagttataatttcaacttataacaacaatgaaaattaaacatcaacaacaagttta 11092863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 258
Target Start/End: Complemental strand, 11923037 - 11922980
Alignment:
Q  201 caacaatgaaaatcaaacatcaacaacaagtttatcatcaattcaacatacccaaatt 258  Q
    ||||||||||||| || |||||||||||||||||| |  ||||  |||||||||||||    
T  11923037 caacaatgaaaattaagcatcaacaacaagtttataacaaatttcacatacccaaatt 11922980  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 93 - 156
Target Start/End: Complemental strand, 15566509 - 15566446
Alignment:
Q  93 caacaataatcatagcatataatcatgatttcactaacaattcacaacaacaacatcatttttc 156  Q
    |||||| | ||||| ||||||||||||||||||| ||||||  |||||||||||||||||||||    
T  15566509 caacaacattcatatcatataatcatgatttcaccaacaatcaacaacaacaacatcatttttc 15566446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 156
Target Start/End: Complemental strand, 14246602 - 14246554
Alignment:
Q  108 catataatcatgatttcactaacaattcacaacaacaacatcatttttc 156  Q
    ||||||||||||| ||||| ||||||  |||||||||||||||||||||    
T  14246602 catataatcatgaattcaccaacaatcaacaacaacaacatcatttttc 14246554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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